Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46919 * 270.00218 * 3 2 1 5 5 H 1.48507 * 109.46949 * 29.99901 * 3 2 1 6 6 H 1.48497 * 109.47084 * 149.99921 * 3 2 1 7 7 C 1.37876 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99968 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47451 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00414 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47269 * 180.02562 * 11 10 9 13 13 C 1.54193 * 111.96913 * 60.66742 * 12 11 10 14 14 C 1.55108 * 103.71997 * 96.39885 * 13 12 11 15 15 C 1.54992 * 102.11150 * 40.57281 * 14 13 12 16 16 C 1.54457 * 104.16240 * 320.44704 * 15 14 13 17 17 H 1.08997 * 111.44687 * 261.97266 * 16 15 14 18 18 O 1.43803 * 108.49045 * 138.22823 * 16 15 14 19 19 C 1.44295 * 107.24723 * 220.00991 * 18 16 15 20 20 C 1.54598 * 112.83075 * 297.20087 * 12 11 10 21 21 H 0.96995 * 119.99969 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46500 * 60.00081 * 9 7 2 23 23 H 1.09004 * 109.47076 * 300.00685 * 9 7 2 24 24 H 1.00901 * 110.99977 * 303.96325 * 10 9 7 25 25 H 1.09001 * 109.46583 * 60.00412 * 11 10 9 26 26 H 1.09000 * 109.47197 * 300.00392 * 11 10 9 27 27 H 1.09003 * 110.57421 * 337.83696 * 13 12 11 28 28 H 1.09004 * 110.70589 * 215.01797 * 13 12 11 29 29 H 1.08999 * 110.90214 * 282.36801 * 14 13 12 30 30 H 1.08993 * 110.90426 * 158.77907 * 14 13 12 31 31 H 1.09007 * 110.49316 * 201.78039 * 15 14 13 32 32 H 1.08999 * 110.49343 * 79.11517 * 15 14 13 33 33 H 1.09000 * 110.61253 * 281.46673 * 19 18 16 34 34 H 1.09001 * 110.61802 * 158.47160 * 19 18 16 35 35 H 1.09000 * 110.89981 * 18.02937 * 20 12 11 36 36 H 1.09002 * 110.90401 * 141.58864 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 0.0001 12 6 2.5303 -6.0429 0.0007 13 6 3.4368 -6.0013 1.2474 14 6 2.7652 -7.0018 2.2241 15 6 2.3526 -8.1556 1.2749 16 6 1.8548 -7.4374 0.0013 17 1 0.7681 -7.3545 -0.0106 18 8 2.3532 -8.1464 -1.1463 19 6 2.7469 -7.1586 -2.1217 20 6 3.4158 -6.0526 -1.2665 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5566 -0.8904 23 1 0.6247 -2.5570 0.8896 24 1 2.8406 -3.5486 -0.7818 25 1 0.8803 -4.9817 -0.8897 26 1 0.8808 -4.9812 0.8903 27 1 3.4526 -4.9993 1.6762 28 1 4.4472 -6.3270 1.0002 29 1 1.8905 -6.5557 2.6972 30 1 3.4758 -7.3501 2.9735 31 1 1.5506 -8.7460 1.7181 32 1 3.2110 -8.7870 1.0461 33 1 1.8744 -6.7654 -2.6434 34 1 3.4604 -7.5809 -2.8293 35 1 3.3763 -5.0898 -1.7758 36 1 4.4439 -6.3186 -1.0206 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687482507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -60.597840 kcal Electronic energy + Delta-G solvation = -16036.295343 eV Core-core repulsion = 13519.409895 eV Total energy + Delta-G solvation = -2516.885448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33488 -35.90487 -34.71343 -32.66186 -31.27346 -28.28641 -27.35418 -26.21644 -23.85230 -22.17957 -21.15194 -20.44840 -18.83737 -16.73845 -16.06172 -15.89184 -15.09063 -14.71568 -14.54156 -13.99208 -13.58150 -13.27835 -13.00873 -12.65786 -12.19913 -11.82334 -11.49684 -11.39742 -11.09374 -10.94411 -10.81200 -10.73482 -10.58572 -10.47678 -10.30584 -10.14168 -9.83935 -9.49870 -9.17587 -8.50042 -7.31107 -6.05056 -4.07238 3.30351 3.36560 3.41018 3.91496 4.39715 4.52699 4.62193 4.98275 5.14985 5.22666 5.27925 5.30992 5.34075 5.47190 5.51572 5.61598 5.73790 5.80269 5.84064 5.98175 6.07015 6.09736 6.13292 6.18446 6.34686 6.39828 6.52877 6.67346 7.04903 7.22743 7.39694 7.76227 8.10684 8.36510 8.58514 9.02113 9.57905 11.06077 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043910 B = 0.005872 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.521926 B = 4767.281809 C = 4933.785464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.079 3.921 12 C -0.085 4.085 13 C -0.106 4.106 14 C -0.125 4.125 15 C -0.123 4.123 16 C 0.077 3.923 17 H 0.076 0.924 18 O -0.379 6.379 19 C 0.046 3.954 20 C -0.145 4.145 21 H 0.261 0.739 22 H -0.015 1.015 23 H 0.028 0.972 24 H 0.327 0.673 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 -14.086 -0.272 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.316 5.316 11 C -0.051 4.051 12 C -0.086 4.086 13 C -0.144 4.144 14 C -0.163 4.163 15 C -0.160 4.160 16 C 0.018 3.982 17 H 0.094 0.906 18 O -0.298 6.298 19 C -0.030 4.030 20 C -0.183 4.183 21 H 0.071 0.929 22 H 0.003 0.997 23 H 0.046 0.954 24 H 0.144 0.856 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.092 -14.171 0.399 15.063 hybrid contribution -0.091 1.162 -0.991 1.530 sum 5.001 -13.010 -0.592 13.950 Atomic orbital electron populations 1.69962 1.06101 1.26810 1.50880 1.24994 0.94871 0.99386 0.95331 0.86485 0.79803 0.83017 0.78026 1.20732 1.21229 1.19759 1.21180 0.93495 0.90234 1.50374 0.91970 1.19550 0.90602 0.87375 0.95751 1.60651 1.21097 1.01023 1.48848 1.21720 0.94012 0.89615 0.99758 1.22485 0.95821 0.94193 0.96112 1.22445 0.96904 1.00931 0.94078 1.22606 1.00574 0.95702 0.97378 1.22584 1.01221 0.97901 0.94341 1.23586 0.97580 0.90845 0.86146 0.90627 1.88805 1.83251 1.30747 1.27038 1.23543 0.98312 0.89142 0.92021 1.23234 0.99436 0.99627 0.95999 0.92898 0.99706 0.95426 0.85574 0.96402 0.91384 0.89127 0.92040 0.91204 0.91593 0.91655 0.90719 0.92462 0.89430 0.90109 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -14.50 9.32 -34.44 -0.32 -14.82 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.05 5.44 -4.98 -0.03 5.02 16 10 N -0.69 -14.29 5.76 -115.06 -0.66 -14.95 16 11 C 0.08 1.39 4.75 -3.83 -0.02 1.37 16 12 C -0.09 -1.24 0.64 -152.02 -0.10 -1.33 16 13 C -0.11 -1.48 5.86 -24.99 -0.15 -1.62 16 14 C -0.13 -1.52 6.92 -24.56 -0.17 -1.69 16 15 C -0.12 -1.48 6.52 -24.92 -0.16 -1.64 16 16 C 0.08 1.05 3.99 -24.94 -0.10 0.95 16 17 H 0.08 1.04 7.86 -51.93 -0.41 0.64 16 18 O -0.38 -5.49 11.03 -35.23 -0.39 -5.88 16 19 C 0.05 0.59 7.72 38.20 0.29 0.88 16 20 C -0.15 -1.93 6.14 -24.85 -0.15 -2.08 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.33 6.53 7.03 -39.29 -0.28 6.26 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.09 1.46 7.37 -51.93 -0.38 1.08 16 28 H 0.06 0.80 7.24 -51.93 -0.38 0.42 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.11 6.48 -51.93 -0.34 0.77 16 36 H 0.08 0.97 7.23 -51.93 -0.38 0.59 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -29.66 284.32 -7.97 -37.63 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.92 Total: 1.91 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.00 Total: -13.48 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.07 Total: -41.07 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.39 Total: -5.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.66 -7.97 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687482507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.970 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds