Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46938 * 269.99667 * 3 2 1 5 5 H 1.48504 * 109.46953 * 29.99355 * 3 2 1 6 6 H 1.48496 * 109.47289 * 149.99204 * 3 2 1 7 7 C 1.37886 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99797 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46643 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99902 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47412 * 179.97438 * 11 10 9 13 13 C 1.51070 * 110.60958 * 291.28241 * 12 11 10 14 14 C 1.55715 * 104.51107 * 277.08237 * 13 12 11 15 15 C 1.55324 * 105.96630 * 352.51622 * 14 13 12 16 16 C 1.50718 * 102.29023 * 336.00550 * 15 14 13 17 17 H 1.08998 * 108.32811 * 291.60175 * 16 15 14 18 18 O 1.39694 * 127.77076 * 158.14236 * 16 15 14 19 19 C 1.46166 * 103.81068 * 198.39789 * 18 16 15 20 20 C 1.51584 * 110.61484 * 71.43817 * 12 11 10 21 21 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46922 * 59.99728 * 9 7 2 23 23 H 1.08998 * 109.46800 * 299.99655 * 9 7 2 24 24 H 1.00904 * 111.00353 * 303.95206 * 10 9 7 25 25 H 1.08999 * 109.47557 * 59.99661 * 11 10 9 26 26 H 1.08999 * 109.46967 * 299.99780 * 11 10 9 27 27 H 1.08999 * 110.43110 * 35.83623 * 13 12 11 28 28 H 1.09002 * 110.43259 * 158.32488 * 13 12 11 29 29 H 1.09001 * 110.16588 * 111.98247 * 14 13 12 30 30 H 1.08996 * 110.16384 * 233.77480 * 14 13 12 31 31 H 1.08996 * 111.19662 * 217.50636 * 15 14 13 32 32 H 1.08998 * 110.29133 * 94.08599 * 15 14 13 33 33 H 1.09008 * 110.02728 * 147.31275 * 19 18 16 34 34 H 1.08998 * 110.03309 * 268.74026 * 19 18 16 35 35 H 1.08994 * 110.85935 * 326.41265 * 20 12 11 36 36 H 1.09000 * 110.85522 * 202.76458 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 6 2.5302 -6.0430 -0.0007 13 6 3.2674 -6.0934 -1.3184 14 6 2.3239 -6.8948 -2.2630 15 6 1.1726 -7.4265 -1.3661 16 6 1.8118 -7.4460 -0.0014 17 1 2.5792 -8.2199 0.0067 18 8 1.1752 -7.4278 1.2420 19 6 2.2277 -7.0110 2.1667 20 6 3.2231 -6.1374 1.3442 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5487 -0.7809 25 1 0.8807 -4.9813 -0.8902 26 1 0.8802 -4.9817 0.8897 27 1 3.4262 -5.0864 -1.7043 28 1 4.2192 -6.6117 -1.2023 29 1 1.9292 -6.2422 -3.0418 30 1 2.8613 -7.7314 -2.7094 31 1 0.8682 -8.4285 -1.6684 32 1 0.3265 -6.7398 -1.3905 33 1 1.7996 -6.4242 2.9795 34 1 2.7408 -7.8854 2.5669 35 1 3.3357 -5.1505 1.7929 36 1 4.1886 -6.6343 1.2492 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687482508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -38.567060 kcal Electronic energy + Delta-G solvation = -16190.899743 eV Core-core repulsion = 13674.969622 eV Total energy + Delta-G solvation = -2515.930121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97880 -36.24244 -34.66423 -32.52336 -31.35515 -27.89432 -27.72632 -26.33430 -23.91514 -21.99700 -21.41473 -20.35835 -18.73987 -16.80948 -16.08474 -15.58182 -15.42705 -14.99881 -14.48262 -14.03791 -13.79854 -12.91692 -12.77200 -12.39998 -12.23916 -12.09598 -11.71012 -11.43957 -11.24668 -11.05875 -10.79789 -10.74228 -10.52740 -10.29846 -10.20139 -10.00043 -9.83793 -9.29666 -9.06152 -8.46333 -7.22330 -6.01403 -4.03490 3.32232 3.38265 3.42714 3.54868 4.44106 4.65533 4.74060 4.85480 5.11665 5.18703 5.25638 5.34290 5.36937 5.44510 5.49157 5.60348 5.69475 5.74512 5.87279 5.95940 6.04267 6.05841 6.20738 6.24654 6.36624 6.49733 6.57312 6.65054 7.06428 7.30494 7.46144 7.80604 8.15881 8.43953 8.65422 9.06158 9.61351 11.09694 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039840 B = 0.006266 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.635010 B = 4467.311681 C = 4629.968419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.687 5.687 11 C 0.079 3.921 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.118 4.118 15 C -0.106 4.106 16 C 0.060 3.940 17 H 0.050 0.950 18 O -0.357 6.357 19 C 0.048 3.952 20 C -0.131 4.131 21 H 0.261 0.739 22 H -0.016 1.016 23 H 0.027 0.973 24 H 0.325 0.675 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -14.924 -1.392 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.318 5.318 11 C -0.051 4.051 12 C -0.105 4.105 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.144 4.144 16 C 0.001 3.999 17 H 0.067 0.933 18 O -0.276 6.276 19 C -0.028 4.028 20 C -0.168 4.168 21 H 0.071 0.929 22 H 0.002 0.998 23 H 0.045 0.955 24 H 0.142 0.858 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.199 -14.832 -0.643 15.730 hybrid contribution 0.214 0.942 -0.889 1.313 sum 5.414 -13.890 -1.532 14.986 Atomic orbital electron populations 1.69966 1.06087 1.26744 1.50919 1.24998 0.94865 0.99348 0.95398 0.86493 0.79793 0.83085 0.77998 1.20753 1.21241 1.19793 1.21195 0.93466 0.90291 1.50283 0.92021 1.19527 0.90595 0.87343 0.95702 1.60644 1.21199 1.01225 1.48724 1.21762 0.94065 0.89147 1.00120 1.22138 0.97614 0.96327 0.94410 1.21614 0.97679 1.00850 0.94172 1.22666 0.95684 0.99325 0.97884 1.21667 0.99064 1.01580 0.92081 1.22495 0.94196 0.96465 0.86763 0.93254 1.88448 1.33755 1.88694 1.16696 1.24056 0.88464 0.97235 0.93067 1.22324 0.97298 1.01826 0.95368 0.92932 0.99774 0.95500 0.85773 0.96183 0.91401 0.90838 0.91691 0.91049 0.91658 0.91252 0.90332 0.89418 0.92322 0.88401 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.23 5.44 -4.98 -0.03 5.20 16 10 N -0.69 -14.87 6.13 -115.06 -0.71 -15.58 16 11 C 0.08 1.47 4.10 -3.83 -0.02 1.45 16 12 C -0.10 -1.54 0.77 -153.68 -0.12 -1.65 16 13 C -0.11 -1.36 6.06 -26.25 -0.16 -1.52 16 14 C -0.12 -1.35 6.69 -24.05 -0.16 -1.51 16 15 C -0.11 -1.33 6.26 -26.64 -0.17 -1.50 16 16 C 0.06 0.84 3.13 -25.35 -0.08 0.76 16 17 H 0.05 0.63 8.01 -51.93 -0.42 0.22 16 18 O -0.36 -5.60 10.87 -32.09 -0.35 -5.95 16 19 C 0.05 0.63 7.38 38.71 0.29 0.92 16 20 C -0.13 -1.81 6.28 -25.90 -0.16 -1.97 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.33 6.71 7.03 -39.29 -0.28 6.43 16 25 H 0.02 0.38 6.30 -51.93 -0.33 0.06 16 26 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 27 H 0.07 1.03 6.39 -51.93 -0.33 0.70 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.09 6.72 -51.93 -0.35 0.74 16 33 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.55 7.68 -51.93 -0.40 1.15 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -30.54 280.93 -7.96 -38.50 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.83 Total: 1.83 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.02 Total: -13.39 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.03 Total: -42.06 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.35 Total: -5.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.54 -7.96 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687482508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.071 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds