Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46938 * 269.99667 * 3 2 1 5 5 H 1.48504 * 109.46953 * 29.99355 * 3 2 1 6 6 H 1.48496 * 109.47289 * 149.99204 * 3 2 1 7 7 C 1.37886 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99555 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99797 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46643 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99902 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47412 * 179.97438 * 11 10 9 13 13 C 1.51070 * 110.60958 * 291.28241 * 12 11 10 14 14 C 1.55715 * 104.51107 * 277.08237 * 13 12 11 15 15 C 1.55324 * 105.96630 * 352.51622 * 14 13 12 16 16 C 1.50718 * 102.29023 * 336.00550 * 15 14 13 17 17 H 1.08998 * 108.32811 * 291.60175 * 16 15 14 18 18 O 1.39694 * 127.77076 * 158.14236 * 16 15 14 19 19 C 1.46166 * 103.81068 * 198.39789 * 18 16 15 20 20 C 1.51584 * 110.61484 * 71.43817 * 12 11 10 21 21 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46922 * 59.99728 * 9 7 2 23 23 H 1.08998 * 109.46800 * 299.99655 * 9 7 2 24 24 H 1.00904 * 111.00353 * 303.95206 * 10 9 7 25 25 H 1.08999 * 109.47557 * 59.99661 * 11 10 9 26 26 H 1.08999 * 109.46967 * 299.99780 * 11 10 9 27 27 H 1.08999 * 110.43110 * 35.83623 * 13 12 11 28 28 H 1.09002 * 110.43259 * 158.32488 * 13 12 11 29 29 H 1.09001 * 110.16588 * 111.98247 * 14 13 12 30 30 H 1.08996 * 110.16384 * 233.77480 * 14 13 12 31 31 H 1.08996 * 111.19662 * 217.50636 * 15 14 13 32 32 H 1.08998 * 110.29133 * 94.08599 * 15 14 13 33 33 H 1.09008 * 110.02728 * 147.31275 * 19 18 16 34 34 H 1.08998 * 110.03309 * 268.74026 * 19 18 16 35 35 H 1.08994 * 110.85935 * 326.41265 * 20 12 11 36 36 H 1.09000 * 110.85522 * 202.76458 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 6 2.5302 -6.0430 -0.0007 13 6 3.2674 -6.0934 -1.3184 14 6 2.3239 -6.8948 -2.2630 15 6 1.1726 -7.4265 -1.3661 16 6 1.8118 -7.4460 -0.0014 17 1 2.5792 -8.2199 0.0067 18 8 1.1752 -7.4278 1.2420 19 6 2.2277 -7.0110 2.1667 20 6 3.2231 -6.1374 1.3442 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5487 -0.7809 25 1 0.8807 -4.9813 -0.8902 26 1 0.8802 -4.9817 0.8897 27 1 3.4262 -5.0864 -1.7043 28 1 4.2192 -6.6117 -1.2023 29 1 1.9292 -6.2422 -3.0418 30 1 2.8613 -7.7314 -2.7094 31 1 0.8682 -8.4285 -1.6684 32 1 0.3265 -6.7398 -1.3905 33 1 1.7996 -6.4242 2.9795 34 1 2.7408 -7.8854 2.5669 35 1 3.3357 -5.1505 1.7929 36 1 4.1886 -6.6343 1.2492 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687482508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -59.443144 kcal Electronic energy + Delta-G solvation = -16191.804998 eV Core-core repulsion = 13674.969622 eV Total energy + Delta-G solvation = -2516.835376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.11884 -37.54690 -36.33029 -34.48673 -32.70932 -29.56421 -28.75750 -27.82464 -25.61676 -23.46658 -23.03932 -21.39930 -19.99945 -18.61680 -17.61566 -16.95332 -16.60425 -16.52215 -16.04331 -15.59143 -14.96550 -14.72807 -14.35305 -13.75854 -13.56969 -13.42254 -13.23859 -12.93769 -12.71215 -12.66436 -12.46686 -12.18120 -12.02956 -11.65608 -11.48768 -11.38028 -11.18134 -11.03807 -10.68076 -10.34782 -9.11511 -8.24203 -6.36453 1.40043 1.42392 1.54239 2.37857 2.47778 3.08840 3.54025 3.60309 3.68966 3.96203 4.09412 4.13591 4.30079 4.32985 4.43308 4.44159 4.49316 4.68496 4.71911 4.91113 4.92896 4.98653 5.05381 5.06296 5.13966 5.22847 5.24548 5.32067 5.43187 5.45414 5.59138 5.97311 6.01582 6.42388 6.70622 6.87796 7.34953 8.87724 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039840 B = 0.006266 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.635010 B = 4467.311681 C = 4629.968419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.210 3.790 10 N -0.679 5.679 11 C 0.085 3.915 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.112 4.112 15 C -0.110 4.110 16 C 0.061 3.939 17 H 0.075 0.925 18 O -0.384 6.384 19 C 0.046 3.954 20 C -0.129 4.129 21 H 0.265 0.735 22 H -0.044 1.044 23 H -0.007 1.007 24 H 0.334 0.666 25 H 0.012 0.988 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -15.841 -1.895 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.310 5.310 11 C -0.045 4.045 12 C -0.106 4.106 13 C -0.143 4.143 14 C -0.149 4.149 15 C -0.147 4.147 16 C 0.002 3.998 17 H 0.093 0.907 18 O -0.304 6.304 19 C -0.030 4.030 20 C -0.166 4.166 21 H 0.074 0.926 22 H -0.027 1.027 23 H 0.011 0.989 24 H 0.152 0.848 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.348 -15.772 -1.150 17.438 hybrid contribution -0.508 1.176 -0.711 1.465 sum 6.840 -14.597 -1.861 16.227 Atomic orbital electron populations 1.70108 1.07980 1.28070 1.51448 1.26021 0.95796 1.03605 0.94466 0.85274 0.78460 0.77636 0.78568 1.19511 1.20729 1.18702 1.21538 0.93850 0.91244 1.50733 0.91496 1.19165 0.90654 0.89223 0.92718 1.60506 1.20223 1.01167 1.49098 1.21720 0.95016 0.89318 0.98412 1.22127 0.97142 0.95300 0.96051 1.21655 0.98990 1.00685 0.92993 1.22663 0.95088 1.00003 0.97189 1.21749 0.98694 1.02348 0.91927 1.22691 0.94602 0.95946 0.86601 0.90733 1.88423 1.35280 1.88847 1.17820 1.24183 0.88013 0.98324 0.92467 1.22316 0.98796 1.01005 0.94489 0.92590 1.02656 0.98887 0.84776 0.97025 0.93938 0.92443 0.89053 0.91618 0.88620 0.88925 0.92862 0.90269 0.89212 0.90991 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.32 9.32 25.60 0.24 -31.08 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.21 11.83 5.44 85.56 0.47 12.30 16 10 N -0.68 -30.37 6.13 -517.95 -3.17 -33.55 16 11 C 0.08 3.28 4.10 86.30 0.35 3.64 16 12 C -0.11 -3.00 0.77 -51.64 -0.04 -3.04 16 13 C -0.11 -2.50 6.06 30.90 0.19 -2.31 16 14 C -0.11 -2.29 6.69 32.33 0.22 -2.07 16 15 C -0.11 -2.57 6.26 30.65 0.19 -2.38 16 16 C 0.06 1.57 3.13 31.49 0.10 1.67 16 17 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 18 O -0.38 -11.73 10.87 -137.74 -1.50 -13.23 16 19 C 0.05 1.15 7.38 72.99 0.54 1.69 16 20 C -0.13 -3.37 6.28 31.13 0.20 -3.17 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 22 H -0.04 -2.68 8.14 -2.39 -0.02 -2.70 16 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 24 H 0.33 14.01 7.03 -89.69 -0.63 13.38 16 25 H 0.01 0.47 6.30 -2.39 -0.02 0.45 16 26 H 0.04 1.83 7.36 -2.39 -0.02 1.82 16 27 H 0.06 1.54 6.39 -2.39 -0.02 1.53 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.50 6.72 -2.39 -0.02 1.48 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.27 7.68 -2.39 -0.02 2.25 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -67.32 280.93 0.97 -66.35 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.42 Total: 15.68 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 2.91 Total: -24.36 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -2.89 Total: -91.29 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.50 Total: -13.23 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.32 0.97 -66.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687482508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.909 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds