Wall clock time and date at job start Mon Mar 30 2020 02:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48496 * 109.46886 * 269.99864 * 3 2 1 5 5 H 1.48492 * 109.47247 * 30.00038 * 3 2 1 6 6 H 1.48493 * 109.47061 * 150.00180 * 3 2 1 7 7 C 1.38813 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99727 * 180.41283 * 7 2 1 9 9 N 1.36936 * 120.00315 * 0.41488 * 7 2 1 10 10 C 1.46493 * 120.00158 * 225.73799 * 9 7 2 11 11 C 1.53002 * 117.49907 * 12.95667 * 10 9 7 12 12 C 1.52997 * 60.00314 * 252.51247 * 11 10 9 13 13 C 1.46502 * 119.99781 * 45.73191 * 9 7 2 14 14 H 1.09002 * 109.47057 * 295.24995 * 13 9 7 15 15 C 1.53007 * 109.46968 * 175.25414 * 13 9 7 16 16 C 1.53002 * 109.46736 * 299.99858 * 15 13 9 17 17 C 1.53001 * 109.47406 * 299.99926 * 16 15 13 18 18 C 1.53004 * 109.46600 * 60.00225 * 17 16 15 19 19 C 1.52995 * 109.47267 * 299.99557 * 18 17 16 20 20 H 1.09004 * 109.47548 * 300.00706 * 19 18 17 21 21 O 1.42899 * 109.47272 * 180.02562 * 19 18 17 22 22 H 0.96993 * 120.00280 * 4.98399 * 1 2 3 23 23 H 1.08998 * 115.55421 * 158.67464 * 10 9 7 24 24 H 1.08997 * 117.50059 * 0.02562 * 11 10 9 25 25 H 1.09007 * 117.49722 * 145.02118 * 11 10 9 26 26 H 1.08991 * 117.50257 * 252.51013 * 12 11 10 27 27 H 1.09005 * 117.51186 * 107.47667 * 12 11 10 28 28 H 1.08995 * 109.47184 * 179.97438 * 15 13 9 29 29 H 1.08994 * 109.47228 * 59.99403 * 15 13 9 30 30 H 1.09004 * 109.47301 * 60.00005 * 16 15 13 31 31 H 1.08995 * 109.46915 * 180.02562 * 16 15 13 32 32 H 1.08993 * 109.47313 * 179.97438 * 17 16 15 33 33 H 1.08995 * 109.47094 * 300.00252 * 17 16 15 34 34 H 1.08995 * 109.47375 * 60.00199 * 18 17 16 35 35 H 1.09008 * 109.46619 * 180.02562 * 18 17 16 36 36 H 0.96697 * 113.99720 * 60.01006 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0073 9 7 1.3257 -2.3881 -0.0075 10 6 1.7206 -3.4680 0.9001 11 6 2.6904 -3.1209 2.0315 12 6 3.1721 -3.9479 0.8378 13 6 0.1982 -2.5767 -0.9238 14 1 -0.6036 -1.8870 -0.6601 15 6 -0.3110 -4.0156 -0.8164 16 6 0.8145 -4.9837 -1.1865 17 6 1.2716 -4.7101 -2.6208 18 6 1.7807 -3.2713 -2.7280 19 6 0.6553 -2.3032 -2.3580 20 1 -0.1837 -2.4436 -3.0397 21 8 1.1305 -0.9593 -2.4588 22 1 -0.4850 0.8368 -0.0730 23 1 0.9525 -4.2135 1.1061 24 1 3.0342 -2.0889 2.1007 25 1 2.5602 -3.6379 2.9823 26 1 3.3589 -5.0089 1.0032 27 1 3.8330 -3.4602 0.1212 28 1 -1.1501 -4.1559 -1.4977 29 1 -0.6365 -4.2105 0.2054 30 1 1.6535 -4.8433 -0.5048 31 1 0.4517 -6.0087 -1.1105 32 1 2.0737 -5.3995 -2.8843 33 1 0.4328 -4.8505 -3.3024 34 1 2.6195 -3.1309 -2.0464 35 1 2.1059 -3.0762 -3.7500 36 1 1.4370 -0.7158 -3.3430 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687715619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:45 Heat of formation + Delta-G solvation = 4.092951 kcal Electronic energy + Delta-G solvation = -17429.203498 eV Core-core repulsion = 14915.123254 eV Total energy + Delta-G solvation = -2514.080245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89255 -35.96152 -34.30172 -32.85435 -30.51511 -29.09683 -27.45748 -23.92317 -22.01954 -21.67286 -21.08144 -19.51021 -18.66500 -16.12157 -15.87839 -15.28323 -14.61242 -14.36495 -13.86989 -13.33956 -12.90757 -12.64701 -12.22780 -12.12062 -11.60303 -11.33360 -10.85201 -10.78275 -10.71228 -10.58236 -10.47034 -10.30864 -10.07375 -9.91562 -9.56654 -9.28902 -9.07652 -8.89287 -8.57510 -8.14102 -6.22808 -5.35691 -3.20972 3.50666 3.55790 3.56738 4.63993 5.06574 5.21237 5.38657 5.50252 5.58367 5.73220 5.82106 5.96844 6.05178 6.14462 6.15728 6.21920 6.25022 6.31840 6.41118 6.48042 6.53882 6.54225 6.67150 6.75109 6.94313 6.99515 7.08594 7.17156 7.26710 7.29787 7.87032 8.10779 8.76151 8.97833 9.46031 10.04786 10.61379 11.50797 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.014240 C = 0.011345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.596465 B = 1965.808319 C = 2467.488509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.050 0.950 9 N -0.539 5.539 10 C 0.134 3.866 11 C -0.200 4.200 12 C -0.235 4.235 13 C 0.184 3.816 14 H 0.096 0.904 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.142 4.142 19 C 0.112 3.888 20 H 0.019 0.981 21 O -0.505 6.505 22 H 0.248 0.752 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -7.671 -3.528 8.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.067 0.933 9 N -0.256 5.256 10 C 0.025 3.975 11 C -0.239 4.239 12 C -0.276 4.276 13 C 0.078 3.922 14 H 0.113 0.887 15 C -0.165 4.165 16 C -0.177 4.177 17 C -0.145 4.145 18 C -0.180 4.180 19 C 0.051 3.949 20 H 0.037 0.963 21 O -0.304 6.304 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.579 -7.488 -2.838 8.029 hybrid contribution 0.753 0.827 -0.853 1.406 sum 1.331 -6.661 -3.691 7.731 Atomic orbital electron populations 1.69710 1.05569 1.25036 1.52539 1.25168 0.94760 0.97509 0.96903 0.86471 0.79069 0.84597 0.77360 1.21479 1.22244 1.20940 1.18459 0.89256 0.82471 1.47212 0.93285 1.43172 1.34638 1.10943 1.36843 1.21132 0.88843 0.93869 0.93701 1.23107 1.07912 1.00849 0.92035 1.23424 1.04110 0.97398 1.02672 1.20734 0.92747 0.92260 0.86471 0.88729 1.21862 0.97298 0.96850 1.00472 1.22034 1.00751 0.97205 0.97742 1.21368 0.99306 0.96783 0.97002 1.22179 1.01317 0.94883 0.99651 1.22102 0.92220 0.82317 0.98261 0.96309 1.87340 1.84642 1.27781 1.30680 0.94107 0.89074 0.88385 0.91143 0.91274 0.89960 0.92982 0.92170 0.88554 0.93981 0.93352 0.93517 0.90125 0.94431 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 10.72 55.49 0.59 -24.79 16 2 C 0.06 1.59 3.68 -17.43 -0.06 1.53 16 3 Si 0.89 22.30 29.56 -169.99 -5.02 17.28 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.51 6.21 -15.06 -0.09 -6.60 16 8 H 0.05 1.37 7.59 -52.49 -0.40 0.97 16 9 N -0.54 -12.85 2.15 -158.14 -0.34 -13.19 16 10 C 0.13 2.82 4.11 -67.93 -0.28 2.55 16 11 C -0.20 -4.07 9.85 -26.73 -0.26 -4.34 16 12 C -0.23 -4.50 8.84 -26.73 -0.24 -4.74 16 13 C 0.18 4.15 2.53 -67.93 -0.17 3.98 16 14 H 0.10 2.54 5.98 -51.93 -0.31 2.23 16 15 C -0.13 -2.35 4.91 -26.73 -0.13 -2.48 16 16 C -0.14 -2.35 5.31 -26.73 -0.14 -2.49 16 17 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 18 C -0.14 -2.64 5.39 -26.73 -0.14 -2.78 16 19 C 0.11 2.35 3.13 -26.73 -0.08 2.27 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 21 O -0.50 -11.65 9.51 -35.23 -0.33 -11.98 16 22 H 0.25 7.04 8.32 -40.82 -0.34 6.70 16 23 H 0.09 1.79 5.51 -51.93 -0.29 1.51 16 24 H 0.10 2.23 7.07 -51.93 -0.37 1.86 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.71 8.07 -51.93 -0.42 1.29 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 30 H 0.10 1.72 3.56 -51.93 -0.18 1.54 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.71 7.54 -51.93 -0.39 1.32 16 35 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.33 6.18 9.08 45.56 0.41 6.60 16 LS Contribution 267.85 15.07 4.04 4.04 Total: -1.00 -28.75 267.85 -7.65 -36.40 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.82 Total: 7.26 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.77 Total: -15.01 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.25 Total: -37.98 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.33 Total: -11.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.75 -7.65 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.493 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds