Wall clock time and date at job start Mon Mar 30 2020 02:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48496 * 109.46886 * 269.99864 * 3 2 1 5 5 H 1.48492 * 109.47247 * 30.00038 * 3 2 1 6 6 H 1.48493 * 109.47061 * 150.00180 * 3 2 1 7 7 C 1.38813 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99727 * 180.41283 * 7 2 1 9 9 N 1.36936 * 120.00315 * 0.41488 * 7 2 1 10 10 C 1.46493 * 120.00158 * 225.73799 * 9 7 2 11 11 C 1.53002 * 117.49907 * 12.95667 * 10 9 7 12 12 C 1.52997 * 60.00314 * 252.51247 * 11 10 9 13 13 C 1.46502 * 119.99781 * 45.73191 * 9 7 2 14 14 H 1.09002 * 109.47057 * 295.24995 * 13 9 7 15 15 C 1.53007 * 109.46968 * 175.25414 * 13 9 7 16 16 C 1.53002 * 109.46736 * 299.99858 * 15 13 9 17 17 C 1.53001 * 109.47406 * 299.99926 * 16 15 13 18 18 C 1.53004 * 109.46600 * 60.00225 * 17 16 15 19 19 C 1.52995 * 109.47267 * 299.99557 * 18 17 16 20 20 H 1.09004 * 109.47548 * 300.00706 * 19 18 17 21 21 O 1.42899 * 109.47272 * 180.02562 * 19 18 17 22 22 H 0.96993 * 120.00280 * 4.98399 * 1 2 3 23 23 H 1.08998 * 115.55421 * 158.67464 * 10 9 7 24 24 H 1.08997 * 117.50059 * 0.02562 * 11 10 9 25 25 H 1.09007 * 117.49722 * 145.02118 * 11 10 9 26 26 H 1.08991 * 117.50257 * 252.51013 * 12 11 10 27 27 H 1.09005 * 117.51186 * 107.47667 * 12 11 10 28 28 H 1.08995 * 109.47184 * 179.97438 * 15 13 9 29 29 H 1.08994 * 109.47228 * 59.99403 * 15 13 9 30 30 H 1.09004 * 109.47301 * 60.00005 * 16 15 13 31 31 H 1.08995 * 109.46915 * 180.02562 * 16 15 13 32 32 H 1.08993 * 109.47313 * 179.97438 * 17 16 15 33 33 H 1.08995 * 109.47094 * 300.00252 * 17 16 15 34 34 H 1.08995 * 109.47375 * 60.00199 * 18 17 16 35 35 H 1.09008 * 109.46619 * 180.02562 * 18 17 16 36 36 H 0.96697 * 113.99720 * 60.01006 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0073 9 7 1.3257 -2.3881 -0.0075 10 6 1.7206 -3.4680 0.9001 11 6 2.6904 -3.1209 2.0315 12 6 3.1721 -3.9479 0.8378 13 6 0.1982 -2.5767 -0.9238 14 1 -0.6036 -1.8870 -0.6601 15 6 -0.3110 -4.0156 -0.8164 16 6 0.8145 -4.9837 -1.1865 17 6 1.2716 -4.7101 -2.6208 18 6 1.7807 -3.2713 -2.7280 19 6 0.6553 -2.3032 -2.3580 20 1 -0.1837 -2.4436 -3.0397 21 8 1.1305 -0.9593 -2.4588 22 1 -0.4850 0.8368 -0.0730 23 1 0.9525 -4.2135 1.1061 24 1 3.0342 -2.0889 2.1007 25 1 2.5602 -3.6379 2.9823 26 1 3.3589 -5.0089 1.0032 27 1 3.8330 -3.4602 0.1212 28 1 -1.1501 -4.1559 -1.4977 29 1 -0.6365 -4.2105 0.2054 30 1 1.6535 -4.8433 -0.5048 31 1 0.4517 -6.0087 -1.1105 32 1 2.0737 -5.3995 -2.8843 33 1 0.4328 -4.8505 -3.3024 34 1 2.6195 -3.1309 -2.0464 35 1 2.1059 -3.0762 -3.7500 36 1 1.4370 -0.7158 -3.3430 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:45 Heat of formation + Delta-G solvation = -13.994493 kcal Electronic energy + Delta-G solvation = -17429.987829 eV Core-core repulsion = 14915.123254 eV Total energy + Delta-G solvation = -2514.864575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49896 -37.61499 -35.90915 -34.74551 -32.28247 -30.70043 -29.13810 -25.88251 -23.53859 -23.20853 -22.62964 -21.22267 -20.28860 -17.84321 -17.74564 -17.03726 -16.25445 -16.11142 -15.66399 -14.95468 -14.40025 -14.15346 -13.90898 -13.79211 -13.25161 -12.95200 -12.76860 -12.63337 -12.39141 -12.20720 -12.09202 -12.00199 -11.79740 -11.66409 -11.13514 -10.85880 -10.71826 -10.51087 -10.23232 -10.14899 -8.20251 -7.36432 -5.28303 1.47748 1.49645 1.54372 2.62638 3.40957 3.55041 3.66377 3.88351 4.10776 4.19875 4.35050 4.43601 4.55959 4.58940 4.63516 4.66250 4.75969 4.91011 4.93096 5.00547 5.06658 5.08937 5.22334 5.30411 5.43549 5.50313 5.60185 5.61144 5.63635 5.79300 5.87869 6.11570 6.70043 7.39021 7.50841 8.11213 8.62103 9.40233 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.014240 C = 0.011345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.596465 B = 1965.808319 C = 2467.488509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.031 0.969 9 N -0.550 5.550 10 C 0.118 3.882 11 C -0.208 4.208 12 C -0.206 4.206 13 C 0.177 3.823 14 H 0.047 0.953 15 C -0.119 4.119 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.131 4.131 19 C 0.108 3.892 20 H 0.028 0.972 21 O -0.537 6.537 22 H 0.239 0.761 23 H 0.111 0.889 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 -10.054 -4.058 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.049 0.951 9 N -0.268 5.268 10 C 0.009 3.991 11 C -0.247 4.247 12 C -0.247 4.247 13 C 0.071 3.929 14 H 0.065 0.935 15 C -0.157 4.157 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.169 4.169 19 C 0.048 3.952 20 H 0.046 0.954 21 O -0.339 6.339 22 H 0.049 0.951 23 H 0.128 0.872 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.063 -9.892 -3.369 10.504 hybrid contribution 0.635 1.538 -0.690 1.801 sum 1.698 -8.354 -4.059 9.442 Atomic orbital electron populations 1.69903 1.06374 1.24566 1.54508 1.25590 0.95200 0.99485 0.97876 0.85787 0.78113 0.82286 0.77033 1.21506 1.22896 1.20786 1.18356 0.88527 0.83793 1.45447 0.95122 1.43257 1.34645 1.10883 1.38032 1.21352 0.90215 0.93733 0.93758 1.23132 1.07945 0.99849 0.93724 1.23317 1.01726 0.98838 1.00813 1.20611 0.91094 0.93982 0.87187 0.93518 1.21770 0.98483 0.94547 1.00937 1.21983 0.99461 0.98097 0.97744 1.21367 1.00509 0.95112 0.97068 1.22021 0.99164 0.96069 0.99676 1.22143 0.93478 0.82066 0.97520 0.95382 1.87270 1.84968 1.29372 1.32294 0.95111 0.87201 0.91580 0.88360 0.87760 0.91943 0.91464 0.92371 0.89684 0.90968 0.91297 0.91927 0.93103 0.92766 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.68 10.72 21.65 0.23 -53.45 16 2 C 0.02 0.94 3.68 84.86 0.31 1.25 16 3 Si 0.94 46.88 29.56 68.60 2.03 48.90 16 4 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 6 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -12.51 6.21 84.03 0.52 -11.99 16 8 H 0.03 1.77 7.59 -2.91 -0.02 1.75 16 9 N -0.55 -26.26 2.15 -654.23 -1.41 -27.67 16 10 C 0.12 4.79 4.11 45.00 0.18 4.97 16 11 C -0.21 -8.19 9.85 30.59 0.30 -7.89 16 12 C -0.21 -7.43 8.84 30.60 0.27 -7.16 16 13 C 0.18 7.98 2.53 44.99 0.11 8.10 16 14 H 0.05 2.59 5.98 -2.39 -0.01 2.58 16 15 C -0.12 -4.17 4.91 30.60 0.15 -4.02 16 16 C -0.14 -4.03 5.31 30.60 0.16 -3.87 16 17 C -0.10 -2.93 5.92 30.60 0.18 -2.75 16 18 C -0.13 -4.61 5.39 30.59 0.16 -4.44 16 19 C 0.11 4.47 3.13 30.59 0.10 4.57 16 20 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 21 O -0.54 -25.05 9.51 -148.98 -1.42 -26.46 16 22 H 0.24 14.04 8.32 -92.71 -0.77 13.27 16 23 H 0.11 4.04 5.51 -2.39 -0.01 4.03 16 24 H 0.07 3.03 7.07 -2.39 -0.02 3.02 16 25 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 26 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.06 2.52 8.07 -2.38 -0.02 2.50 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.03 6.87 -2.39 -0.02 2.01 16 30 H 0.08 2.74 3.56 -2.38 -0.01 2.73 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 2.09 7.54 -2.39 -0.02 2.08 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.34 13.01 9.08 -74.06 -0.67 12.34 16 Total: -1.00 -63.00 267.85 2.29 -60.71 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.39 Total: 21.20 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.46 Total: -23.24 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.18 Total: -81.12 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.42 Total: -26.46 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -63.00 2.29 -60.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.719 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds