Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00370 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47311 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46560 * 65.00107 * 12 11 10 14 14 C 1.50611 * 110.99946 * 91.52944 * 13 12 11 15 15 C 1.50036 * 82.14488 * 156.52552 * 14 13 12 16 16 H 1.08998 * 114.63972 * 69.55057 * 15 14 13 17 17 C 1.52114 * 128.13778 * 227.42228 * 15 14 13 18 18 C 1.56091 * 101.79049 * 126.90843 * 17 15 14 19 19 C 1.55692 * 104.80978 * 333.41478 * 18 17 15 20 20 C 1.42706 * 110.99840 * 179.20110 * 13 12 11 21 21 H 1.09001 * 111.43932 * 318.69821 * 20 13 12 22 22 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 24 24 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 25 25 H 1.09000 * 109.47330 * 299.99862 * 11 10 9 26 26 H 1.09001 * 109.46918 * 59.99989 * 11 10 9 27 27 H 1.08992 * 109.47174 * 184.99687 * 12 11 10 28 28 H 1.08998 * 109.47031 * 305.00529 * 12 11 10 29 29 H 1.09005 * 114.42500 * 269.83967 * 14 13 12 30 30 H 1.08998 * 114.43079 * 43.20857 * 14 13 12 31 31 H 1.09001 * 110.96553 * 245.03070 * 17 15 14 32 32 H 1.08999 * 110.96657 * 8.78142 * 17 15 14 33 33 H 1.08999 * 110.37264 * 92.24623 * 18 17 15 34 34 H 1.08999 * 110.37124 * 214.47551 * 18 17 15 35 35 H 1.09005 * 110.48789 * 110.55700 * 19 18 17 36 36 H 1.09000 * 110.49021 * 233.08240 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5852 0.0017 11 6 1.5651 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0030 13 7 3.4081 -5.8870 1.2583 14 6 2.8087 -6.7917 2.3027 15 6 4.2002 -6.7285 2.8602 16 1 4.4799 -5.7603 3.2754 17 6 5.0743 -7.8786 3.3369 18 6 6.3825 -7.6456 2.5179 19 6 5.9205 -6.8929 1.2357 20 6 4.4173 -6.8951 1.3014 21 1 4.0496 -7.8439 0.9106 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8896 25 1 0.9446 -4.9818 0.8922 26 1 0.9454 -4.9830 -0.8878 27 1 2.1822 -6.9375 -0.0859 28 1 3.3218 -5.7960 -0.8388 29 1 2.0509 -6.3188 2.9274 30 1 2.5153 -7.7743 1.9332 31 1 5.2661 -7.8050 4.4074 32 1 4.6242 -8.8396 3.0881 33 1 7.0820 -7.0328 3.0864 34 1 6.8408 -8.5992 2.2557 35 1 6.2756 -5.8624 1.2495 36 1 6.2767 -7.4064 0.3426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = 32.948540 kcal Electronic energy + Delta-G solvation = -15572.599622 eV Core-core repulsion = 13059.770650 eV Total energy + Delta-G solvation = -2512.828972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81918 -36.87160 -35.04596 -32.95132 -30.76774 -28.79970 -26.59158 -25.05832 -24.18199 -22.43951 -21.47343 -20.46723 -19.56911 -16.91201 -15.87030 -15.73173 -15.20691 -14.80525 -14.56186 -14.24999 -13.92289 -13.66801 -13.34901 -12.40554 -12.34761 -11.81334 -11.72971 -11.45030 -11.25253 -11.13844 -10.88067 -10.72936 -10.58993 -10.56487 -10.10190 -10.03358 -9.25564 -8.94953 -8.75347 -8.56240 -8.16573 -6.41115 -4.08565 3.36788 3.46644 3.49892 3.68545 4.24583 4.48052 4.59733 4.68204 4.78246 5.01882 5.08699 5.12266 5.20786 5.35891 5.36990 5.43882 5.53901 5.61913 5.66201 5.76324 5.82926 5.84172 5.91800 6.00483 6.11462 6.17976 6.28242 6.36612 6.47415 6.82702 7.12214 7.20337 7.98111 8.25802 8.71784 8.88722 9.61966 10.99220 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.005230 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.842997 B = 5352.911818 C = 5699.583226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.592 4.592 8 H 0.060 0.940 9 C 0.185 3.815 10 O -0.373 6.373 11 C 0.071 3.929 12 C 0.009 3.991 13 N -0.406 5.406 14 C 0.004 3.996 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.023 4.023 21 H 0.061 0.939 22 H 0.266 0.734 23 H -0.007 1.007 24 H -0.008 1.008 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -17.385 4.585 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.631 4.631 8 H 0.078 0.922 9 C 0.111 3.889 10 O -0.292 6.292 11 C -0.007 4.007 12 C -0.119 4.119 13 N -0.128 5.128 14 C -0.123 4.123 15 C -0.150 4.150 16 H 0.136 0.864 17 C -0.144 4.144 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.133 4.133 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.011 0.989 24 H 0.010 0.990 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.623 -14.921 4.612 17.840 hybrid contribution -0.467 -2.616 -0.513 2.707 sum 8.155 -17.537 4.099 19.770 Atomic orbital electron populations 1.70799 1.06836 1.30343 1.46974 1.25934 0.96423 1.02670 0.93672 0.83405 0.74703 0.74505 0.76750 1.21257 1.21202 1.20666 1.21905 0.95445 0.90433 1.55272 0.92171 1.20260 0.89491 0.85344 0.93835 1.87962 1.34131 1.12227 1.94923 1.22134 0.93833 0.86071 0.98663 1.22850 0.97390 0.96761 0.94945 1.70757 1.04734 1.31510 1.05756 1.23904 0.96325 0.96253 0.95832 1.23566 0.96140 1.00288 0.95021 0.86381 1.21912 0.95450 0.97499 0.99537 1.22898 0.97321 0.99885 0.95275 1.21489 0.93487 1.01518 0.97552 1.23706 0.95600 0.95042 0.98956 0.92112 0.92390 0.98897 0.99049 0.94639 0.94512 0.93054 0.90256 0.89576 0.90680 0.91513 0.91616 0.91261 0.91693 0.90966 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.82 13.65 55.43 0.76 -28.06 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.08 26.27 29.90 -169.99 -5.08 21.19 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.59 -18.43 9.43 -34.44 -0.32 -18.76 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.19 5.34 5.00 36.00 0.18 5.52 16 10 O -0.37 -9.72 10.27 -35.23 -0.36 -10.08 16 11 C 0.07 1.42 6.28 37.16 0.23 1.65 16 12 C 0.01 0.14 5.23 -3.82 -0.02 0.12 16 13 N -0.41 -6.59 6.23 -364.63 -2.27 -8.86 16 14 C 0.00 0.06 7.43 -33.52 -0.25 -0.19 16 15 C -0.13 -1.58 4.68 -92.27 -0.43 -2.01 16 16 H 0.12 1.64 8.12 -51.93 -0.42 1.22 16 17 C -0.11 -0.98 6.70 -25.53 -0.17 -1.15 16 18 C -0.12 -1.05 6.99 -23.64 -0.17 -1.22 16 19 C -0.10 -1.17 6.62 -26.56 -0.18 -1.34 16 20 C -0.02 -0.30 3.60 -98.60 -0.36 -0.65 16 21 H 0.06 0.72 6.98 -51.93 -0.36 0.35 16 22 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 23 H -0.01 -0.19 8.01 -51.93 -0.42 -0.61 16 24 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 0.80 7.05 -51.93 -0.37 0.43 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -33.66 290.96 -10.25 -43.91 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -6.10 Total: -4.83 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.58 Total: -17.65 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -1.51 Total: -36.92 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.36 Total: -10.08 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.08 Total: 21.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.66 -10.25 -43.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.862 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds