Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00370 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47311 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46560 * 65.00107 * 12 11 10 14 14 C 1.50611 * 110.99946 * 91.52944 * 13 12 11 15 15 C 1.50036 * 82.14488 * 156.52552 * 14 13 12 16 16 H 1.08998 * 114.63972 * 69.55057 * 15 14 13 17 17 C 1.52114 * 128.13778 * 227.42228 * 15 14 13 18 18 C 1.56091 * 101.79049 * 126.90843 * 17 15 14 19 19 C 1.55692 * 104.80978 * 333.41478 * 18 17 15 20 20 C 1.42706 * 110.99840 * 179.20110 * 13 12 11 21 21 H 1.09001 * 111.43932 * 318.69821 * 20 13 12 22 22 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 24 24 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 25 25 H 1.09000 * 109.47330 * 299.99862 * 11 10 9 26 26 H 1.09001 * 109.46918 * 59.99989 * 11 10 9 27 27 H 1.08992 * 109.47174 * 184.99687 * 12 11 10 28 28 H 1.08998 * 109.47031 * 305.00529 * 12 11 10 29 29 H 1.09005 * 114.42500 * 269.83967 * 14 13 12 30 30 H 1.08998 * 114.43079 * 43.20857 * 14 13 12 31 31 H 1.09001 * 110.96553 * 245.03070 * 17 15 14 32 32 H 1.08999 * 110.96657 * 8.78142 * 17 15 14 33 33 H 1.08999 * 110.37264 * 92.24623 * 18 17 15 34 34 H 1.08999 * 110.37124 * 214.47551 * 18 17 15 35 35 H 1.09005 * 110.48789 * 110.55700 * 19 18 17 36 36 H 1.09000 * 110.49021 * 233.08240 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5852 0.0017 11 6 1.5651 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0030 13 7 3.4081 -5.8870 1.2583 14 6 2.8087 -6.7917 2.3027 15 6 4.2002 -6.7285 2.8602 16 1 4.4799 -5.7603 3.2754 17 6 5.0743 -7.8786 3.3369 18 6 6.3825 -7.6456 2.5179 19 6 5.9205 -6.8929 1.2357 20 6 4.4173 -6.8951 1.3014 21 1 4.0496 -7.8439 0.9106 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8896 25 1 0.9446 -4.9818 0.8922 26 1 0.9454 -4.9830 -0.8878 27 1 2.1822 -6.9375 -0.0859 28 1 3.3218 -5.7960 -0.8388 29 1 2.0509 -6.3188 2.9274 30 1 2.5153 -7.7743 1.9332 31 1 5.2661 -7.8050 4.4074 32 1 4.6242 -8.8396 3.0881 33 1 7.0820 -7.0328 3.0864 34 1 6.8408 -8.5992 2.2557 35 1 6.2756 -5.8624 1.2495 36 1 6.2767 -7.4064 0.3426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = 7.277990 kcal Electronic energy + Delta-G solvation = -15573.712780 eV Core-core repulsion = 13059.770650 eV Total energy + Delta-G solvation = -2513.942131 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.82458 -38.78415 -36.14932 -35.18746 -32.11850 -29.84022 -28.65563 -26.40516 -25.07771 -24.75427 -22.77601 -21.45724 -20.50518 -19.21036 -17.61311 -17.17980 -16.15639 -15.93354 -15.92495 -15.66163 -15.52763 -15.10530 -15.00839 -14.06459 -13.75346 -13.63260 -13.04885 -12.87015 -12.55585 -12.50587 -12.14908 -12.03043 -11.91417 -11.69756 -11.61239 -11.35672 -10.90421 -10.87649 -10.41589 -10.19351 -9.97939 -8.86973 -6.57354 1.50565 1.60023 1.81702 2.40667 2.47968 3.00515 3.01647 3.25365 3.67001 3.83629 3.92639 4.07681 4.12558 4.25493 4.31026 4.36682 4.40507 4.42555 4.50557 4.62611 4.68971 4.76025 4.83244 4.89350 4.93494 5.02914 5.13610 5.20944 5.37869 5.39315 5.52206 5.65349 5.88938 6.05377 6.29915 6.66988 7.23752 8.54210 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.005230 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.842997 B = 5352.911818 C = 5699.583226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.129 2.871 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.624 4.624 8 H 0.050 0.950 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.061 3.939 12 C 0.018 3.982 13 N -0.457 5.457 14 C 0.010 3.990 15 C -0.127 4.127 16 H 0.089 0.911 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.029 4.029 21 H 0.083 0.917 22 H 0.255 0.745 23 H -0.022 1.022 24 H -0.019 1.019 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -18.732 4.883 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.947 3.053 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.662 4.662 8 H 0.068 0.932 9 C 0.121 3.879 10 O -0.313 6.313 11 C -0.016 4.016 12 C -0.111 4.111 13 N -0.179 5.179 14 C -0.117 4.117 15 C -0.146 4.146 16 H 0.107 0.893 17 C -0.134 4.134 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.139 4.139 21 H 0.100 0.900 22 H 0.064 0.936 23 H -0.004 1.004 24 H -0.001 1.001 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.674 -16.315 4.913 19.594 hybrid contribution -0.818 -2.285 -0.610 2.502 sum 8.856 -18.600 4.303 21.045 Atomic orbital electron populations 1.70927 1.07682 1.29740 1.47950 1.27661 0.96469 1.06572 0.91813 0.82819 0.74067 0.70100 0.78271 1.19165 1.19320 1.19732 1.22253 0.95245 0.92161 1.56507 0.93197 1.19941 0.89320 0.86142 0.92501 1.87914 1.34468 1.13964 1.94991 1.22508 0.95579 0.84315 0.99178 1.22790 0.96287 0.96798 0.95176 1.70806 1.06692 1.34212 1.06232 1.23989 0.96284 0.96730 0.94697 1.23431 0.96003 1.00366 0.94809 0.89269 1.21913 0.94517 0.96858 1.00150 1.22886 0.97357 1.00598 0.93870 1.21599 0.92758 1.00533 0.99537 1.23850 0.95886 0.94738 0.99428 0.89958 0.93616 1.00413 1.00099 0.94472 0.93466 0.89260 0.91357 0.90765 0.87690 0.90474 0.89749 0.91213 0.89423 0.93669 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.07 13.65 21.45 0.29 -58.78 16 2 C -0.03 -1.69 5.46 84.66 0.46 -1.23 16 3 Si 1.13 52.18 29.90 68.60 2.05 54.24 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.62 -39.69 9.43 25.60 0.24 -39.44 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.20 11.69 5.00 71.23 0.36 12.04 16 10 O -0.39 -21.11 10.27 -148.98 -1.53 -22.64 16 11 C 0.06 2.46 6.28 71.98 0.45 2.92 16 12 C 0.02 0.56 5.23 86.31 0.45 1.01 16 13 N -0.46 -14.64 6.23 ******* -8.15 -22.79 16 14 C 0.01 0.24 7.43 64.98 0.48 0.72 16 15 C -0.13 -2.91 4.68 -9.24 -0.04 -2.96 16 16 H 0.09 2.55 8.12 -2.39 -0.02 2.53 16 17 C -0.10 -1.50 6.70 31.37 0.21 -1.29 16 18 C -0.11 -1.70 6.99 32.60 0.23 -1.47 16 19 C -0.11 -2.28 6.62 30.71 0.20 -2.08 16 20 C -0.03 -0.71 3.60 27.11 0.10 -0.62 16 21 H 0.08 1.65 6.98 -2.39 -0.02 1.63 16 22 H 0.25 16.41 7.22 -92.70 -0.67 15.74 16 23 H -0.02 -1.33 8.01 -2.39 -0.02 -1.35 16 24 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 2.11 7.53 -2.39 -0.02 2.09 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 29 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.11 1.87 7.05 -2.39 -0.02 1.86 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.82 290.96 -3.06 -76.88 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.13 Total: 5.48 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.14 Total: -32.39 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -7.85 Total: -81.57 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.53 Total: -22.64 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.05 Total: 54.24 kcal Total: -73.82 -3.06 -76.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.161 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds