Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46985 * 300.00178 * 3 2 1 6 6 H 1.48497 * 109.46926 * 59.99764 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00111 * 175.14741 * 7 2 1 9 9 C 1.50705 * 119.99623 * 355.42373 * 7 2 1 10 10 C 1.53005 * 115.54910 * 274.92344 * 9 7 2 11 11 N 1.46893 * 109.47502 * 294.80963 * 10 9 7 12 12 O 1.46300 * 111.00273 * 185.40479 * 11 10 9 13 13 C 1.42902 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.53011 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.53778 * 113.61307 * 274.13384 * 14 13 12 16 16 C 1.53951 * 87.01948 * 220.05089 * 15 14 13 17 17 C 1.53780 * 113.61015 * 176.52705 * 14 13 12 18 18 C 1.52999 * 117.49797 * 129.26103 * 9 7 2 19 19 C 1.52993 * 117.50138 * 60.59710 * 9 7 2 20 20 H 0.96992 * 119.99726 * 5.00441 * 1 2 3 21 21 H 1.09003 * 109.46657 * 54.80753 * 10 9 7 22 22 H 1.08998 * 109.46778 * 174.80122 * 10 9 7 23 23 H 1.00898 * 111.00501 * 61.44279 * 11 10 9 24 24 H 1.08998 * 109.47159 * 299.99315 * 13 12 11 25 25 H 1.08998 * 109.47700 * 59.99984 * 13 12 11 26 26 H 1.08997 * 112.85116 * 45.33295 * 14 13 12 27 27 H 1.09000 * 113.61383 * 334.56953 * 15 14 13 28 28 H 1.09000 * 113.61664 * 105.47071 * 15 14 13 29 29 H 1.09003 * 113.53722 * 270.81599 * 16 15 14 30 30 H 1.09002 * 113.67172 * 139.92792 * 16 15 14 31 31 H 1.09007 * 113.61533 * 254.52942 * 17 14 13 32 32 H 1.09001 * 113.61908 * 25.34450 * 17 14 13 33 33 H 1.09001 * 117.49905 * 359.97438 * 18 9 7 34 34 H 1.08995 * 117.49658 * 145.01561 * 18 9 7 35 35 H 1.08998 * 117.50212 * 214.97671 * 19 9 7 36 36 H 1.08999 * 117.49991 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1053 10 6 0.9189 -2.9527 1.5267 11 7 2.1613 -3.2474 2.2529 12 8 1.8763 -3.8077 3.5740 13 6 3.0435 -4.1194 4.3373 14 6 2.6277 -4.6947 5.6927 15 6 2.3512 -3.6215 6.7588 16 6 3.0581 -4.5508 7.7622 17 6 3.8146 -5.1434 6.5616 18 6 1.5732 -3.5803 -0.9272 19 6 0.2454 -2.8218 -0.9977 20 1 -0.4849 0.8368 -0.0733 21 1 0.3753 -2.1615 2.0430 22 1 0.3013 -3.8498 1.4842 23 1 2.7411 -2.4248 2.3264 24 1 3.6441 -4.8530 3.7996 25 1 3.6293 -3.2133 4.4918 26 1 1.8390 -5.4426 5.6112 27 1 2.8807 -2.6850 6.5832 28 1 1.2913 -3.4768 6.9681 29 1 2.3863 -5.2588 8.2476 30 1 3.7017 -4.0248 8.4673 31 1 3.9344 -6.2257 6.6120 32 1 4.7452 -4.6249 6.3310 33 1 2.3248 -3.3505 -1.6824 34 1 1.5430 -4.6176 -0.5938 35 1 -0.6577 -3.3605 -0.7108 36 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688487928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = 32.307579 kcal Electronic energy + Delta-G solvation = -15407.741980 eV Core-core repulsion = 12894.885214 eV Total energy + Delta-G solvation = -2512.856766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90317 -36.90319 -35.57746 -31.98763 -31.19116 -27.75818 -25.65442 -25.54814 -23.64027 -22.45808 -20.96478 -19.42716 -19.08316 -16.41983 -15.97323 -15.73309 -15.10788 -14.69484 -14.37101 -13.85881 -13.65340 -13.22598 -12.59127 -12.49052 -12.00403 -11.76342 -11.60422 -11.25372 -10.99659 -10.95764 -10.60342 -10.49058 -10.35862 -10.31573 -10.13051 -9.73239 -9.41589 -8.89830 -8.45090 -8.18935 -7.68099 -6.06660 -4.15966 3.23978 3.33299 3.36629 3.39350 4.35718 4.58406 4.62802 4.75622 4.85339 5.20990 5.40955 5.47645 5.56835 5.68547 5.70612 5.79581 5.84728 5.89917 5.97520 6.05439 6.21378 6.30073 6.44737 6.49784 6.54740 6.75618 6.82092 6.88164 7.17326 7.45363 7.52828 7.66871 7.83705 8.11016 8.41803 8.88496 9.51114 11.00375 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.006028 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.717952 B = 4644.240136 C = 5233.526592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.044 3.956 10 C 0.097 3.903 11 N -0.491 5.491 12 O -0.274 6.274 13 C 0.075 3.925 14 C -0.106 4.106 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.131 4.131 18 C -0.201 4.201 19 C -0.146 4.146 20 H 0.260 0.740 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.338 0.662 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -6.892 10.369 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.042 3.958 10 C -0.032 4.032 11 N -0.163 5.163 12 O -0.280 6.280 13 C -0.004 4.004 14 C -0.126 4.126 15 C -0.173 4.173 16 C -0.180 4.180 17 C -0.169 4.169 18 C -0.239 4.239 19 C -0.185 4.185 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.154 0.846 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.662 -7.424 10.236 13.477 hybrid contribution 0.217 1.907 0.322 1.946 sum 4.879 -5.517 10.558 12.873 Atomic orbital electron populations 1.70015 1.05890 1.26668 1.48762 1.25035 0.94829 0.98989 0.94458 0.86589 0.80306 0.83824 0.77657 1.19590 1.20940 1.21016 1.20519 0.92899 0.88667 1.51696 0.91970 1.18652 0.98995 0.93113 0.84995 1.21736 0.89351 0.97831 0.94322 1.66907 1.17785 1.36043 0.95580 1.90703 1.28018 1.82396 1.26841 1.22275 0.89256 0.98292 0.90533 1.22547 0.98954 0.98794 0.92311 1.22996 1.01001 0.97452 0.95882 1.22841 0.99485 0.99298 0.96400 1.22887 0.97393 1.00802 0.95825 1.22938 0.99890 0.95939 1.05089 1.22502 0.90952 1.01547 1.03455 0.92994 0.94079 0.92931 0.84617 0.93100 0.93985 0.88632 0.90127 0.91441 0.90312 0.91568 0.91362 0.89992 0.90623 0.91436 0.92018 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 12.65 55.43 0.70 -23.92 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.50 -13.34 8.33 -34.44 -0.29 -13.63 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.04 1.08 1.65 -155.66 -0.26 0.83 16 10 C 0.10 2.29 6.07 -3.83 -0.02 2.27 16 11 N -0.49 -10.55 7.30 -10.37 -0.08 -10.63 16 12 O -0.27 -5.45 11.28 -13.92 -0.16 -5.60 16 13 C 0.07 1.15 6.21 37.16 0.23 1.38 16 14 C -0.11 -1.35 4.00 -89.80 -0.36 -1.71 16 15 C -0.14 -1.60 7.65 -25.83 -0.20 -1.80 16 16 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 17 C -0.13 -1.32 7.65 -25.92 -0.20 -1.52 16 18 C -0.20 -4.52 9.96 -26.69 -0.27 -4.79 16 19 C -0.15 -3.50 9.14 -26.69 -0.24 -3.74 16 20 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 21 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.05 1.21 8.09 -51.93 -0.42 0.79 16 23 H 0.34 7.25 8.49 -39.29 -0.33 6.92 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.62 7.87 -51.93 -0.41 0.22 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.08 0.97 7.92 -51.93 -0.41 0.55 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -28.04 302.44 -8.09 -36.14 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.19 Total: 6.21 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.91 Total: -22.47 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.63 Total: -34.55 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.16 Total: -5.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.04 -8.09 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688487928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.444 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds