Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46985 * 300.00178 * 3 2 1 6 6 H 1.48497 * 109.46926 * 59.99764 * 3 2 1 7 7 C 1.37876 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00111 * 175.14741 * 7 2 1 9 9 C 1.50705 * 119.99623 * 355.42373 * 7 2 1 10 10 C 1.53005 * 115.54910 * 274.92344 * 9 7 2 11 11 N 1.46893 * 109.47502 * 294.80963 * 10 9 7 12 12 O 1.46300 * 111.00273 * 185.40479 * 11 10 9 13 13 C 1.42902 * 113.99830 * 179.97438 * 12 11 10 14 14 C 1.53011 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.53778 * 113.61307 * 274.13384 * 14 13 12 16 16 C 1.53951 * 87.01948 * 220.05089 * 15 14 13 17 17 C 1.53780 * 113.61015 * 176.52705 * 14 13 12 18 18 C 1.52999 * 117.49797 * 129.26103 * 9 7 2 19 19 C 1.52993 * 117.50138 * 60.59710 * 9 7 2 20 20 H 0.96992 * 119.99726 * 5.00441 * 1 2 3 21 21 H 1.09003 * 109.46657 * 54.80753 * 10 9 7 22 22 H 1.08998 * 109.46778 * 174.80122 * 10 9 7 23 23 H 1.00898 * 111.00501 * 61.44279 * 11 10 9 24 24 H 1.08998 * 109.47159 * 299.99315 * 13 12 11 25 25 H 1.08998 * 109.47700 * 59.99984 * 13 12 11 26 26 H 1.08997 * 112.85116 * 45.33295 * 14 13 12 27 27 H 1.09000 * 113.61383 * 334.56953 * 15 14 13 28 28 H 1.09000 * 113.61664 * 105.47071 * 15 14 13 29 29 H 1.09003 * 113.53722 * 270.81599 * 16 15 14 30 30 H 1.09002 * 113.67172 * 139.92792 * 16 15 14 31 31 H 1.09007 * 113.61533 * 254.52942 * 17 14 13 32 32 H 1.09001 * 113.61908 * 25.34450 * 17 14 13 33 33 H 1.09001 * 117.49905 * 359.97438 * 18 9 7 34 34 H 1.08995 * 117.49658 * 145.01561 * 18 9 7 35 35 H 1.08998 * 117.50212 * 214.97671 * 19 9 7 36 36 H 1.08999 * 117.49991 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1053 10 6 0.9189 -2.9527 1.5267 11 7 2.1613 -3.2474 2.2529 12 8 1.8763 -3.8077 3.5740 13 6 3.0435 -4.1194 4.3373 14 6 2.6277 -4.6947 5.6927 15 6 2.3512 -3.6215 6.7588 16 6 3.0581 -4.5508 7.7622 17 6 3.8146 -5.1434 6.5616 18 6 1.5732 -3.5803 -0.9272 19 6 0.2454 -2.8218 -0.9977 20 1 -0.4849 0.8368 -0.0733 21 1 0.3753 -2.1615 2.0430 22 1 0.3013 -3.8498 1.4842 23 1 2.7411 -2.4248 2.3264 24 1 3.6441 -4.8530 3.7996 25 1 3.6293 -3.2133 4.4918 26 1 1.8390 -5.4426 5.6112 27 1 2.8807 -2.6850 6.5832 28 1 1.2913 -3.4768 6.9681 29 1 2.3863 -5.2588 8.2476 30 1 3.7017 -4.0248 8.4673 31 1 3.9344 -6.2257 6.6120 32 1 4.7452 -4.6249 6.3310 33 1 2.3248 -3.3505 -1.6824 34 1 1.5430 -4.6176 -0.5938 35 1 -0.6577 -3.3605 -0.7108 36 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688487928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = 17.044785 kcal Electronic energy + Delta-G solvation = -15408.403825 eV Core-core repulsion = 12894.885214 eV Total energy + Delta-G solvation = -2513.518611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87018 -38.74027 -37.12538 -34.03477 -32.85809 -28.98824 -27.60442 -26.49041 -25.43840 -23.51637 -22.83979 -21.06453 -20.30534 -18.10250 -17.80684 -16.82592 -16.63587 -16.46863 -15.79566 -15.44147 -15.14619 -14.73892 -14.29226 -13.51870 -13.34260 -13.30112 -13.08182 -12.92407 -12.85705 -12.56688 -12.32211 -12.00570 -11.59676 -11.47914 -11.32142 -11.18244 -11.00753 -10.86966 -10.43753 -10.05628 -9.43984 -8.11938 -6.26721 1.39020 1.42703 1.53029 1.84892 2.40616 3.15182 3.51434 3.66714 3.73924 3.84296 3.96960 4.19095 4.38594 4.45566 4.56193 4.61942 4.67493 4.69922 4.84136 4.84480 4.85507 4.89541 5.02660 5.05382 5.08964 5.13446 5.27161 5.35096 5.56503 5.59673 5.66986 5.75527 5.84297 6.38783 6.47647 6.82851 7.43199 8.95061 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.006028 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.717952 B = 4644.240136 C = 5233.526592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.112 3.888 11 N -0.490 5.490 12 O -0.286 6.286 13 C 0.068 3.932 14 C -0.113 4.113 15 C -0.144 4.144 16 C -0.131 4.131 17 C -0.121 4.121 18 C -0.177 4.177 19 C -0.150 4.150 20 H 0.260 0.740 21 H 0.009 0.991 22 H 0.056 0.944 23 H 0.336 0.664 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -7.525 11.353 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.017 3.983 10 C -0.018 4.018 11 N -0.160 5.160 12 O -0.294 6.294 13 C -0.009 4.009 14 C -0.132 4.132 15 C -0.182 4.182 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.214 4.214 19 C -0.189 4.189 20 H 0.069 0.931 21 H 0.027 0.973 22 H 0.075 0.925 23 H 0.151 0.849 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.987 -8.066 11.212 15.054 hybrid contribution -0.171 2.044 0.059 2.052 sum 5.816 -6.022 11.271 14.040 Atomic orbital electron populations 1.70122 1.07196 1.27346 1.49831 1.25727 0.95543 1.02056 0.94252 0.85618 0.79401 0.79911 0.77433 1.18779 1.20699 1.21049 1.20740 0.92847 0.89806 1.51309 0.92387 1.18769 0.99930 0.93670 0.85978 1.21451 0.89829 0.96682 0.93815 1.66802 1.16455 1.35533 0.97229 1.90693 1.30424 1.82256 1.25981 1.22599 0.88240 0.98762 0.91332 1.22645 1.00489 0.99131 0.90982 1.23054 1.00854 0.97558 0.96726 1.22810 0.99273 0.98653 0.96091 1.22884 0.96488 1.01828 0.94702 1.22920 0.98630 0.96228 1.03586 1.22416 0.92052 1.01710 1.02682 0.93070 0.97304 0.92528 0.84863 0.92721 0.93484 0.89137 0.90564 0.92245 0.89279 0.90150 0.89949 0.89351 0.90279 0.89499 0.91010 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.58 12.65 21.45 0.27 -51.31 16 2 C 0.02 1.34 5.43 84.65 0.46 1.80 16 3 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.51 -27.19 8.33 25.60 0.21 -26.98 16 8 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 9 C 0.02 0.87 1.65 -52.93 -0.09 0.79 16 10 C 0.11 5.33 6.07 86.31 0.52 5.85 16 11 N -0.49 -20.94 7.30 -186.72 -1.36 -22.31 16 12 O -0.29 -11.27 11.28 -50.16 -0.57 -11.83 16 13 C 0.07 2.04 6.21 71.99 0.45 2.48 16 14 C -0.11 -2.70 4.00 -10.27 -0.04 -2.74 16 15 C -0.14 -3.22 7.65 31.18 0.24 -2.99 16 16 C -0.13 -2.15 8.09 31.18 0.25 -1.90 16 17 C -0.12 -2.12 7.65 31.12 0.24 -1.88 16 18 C -0.18 -7.70 9.96 30.62 0.30 -7.40 16 19 C -0.15 -7.16 9.14 30.62 0.28 -6.88 16 20 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 21 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 22 H 0.06 2.59 8.09 -2.39 -0.02 2.57 16 23 H 0.34 14.42 8.49 -89.70 -0.76 13.66 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.35 7.87 -2.39 -0.02 1.33 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 1.75 7.92 -2.39 -0.02 1.73 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.44 8.10 -2.39 -0.02 1.43 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.06 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -58.83 302.44 3.47 -55.36 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.28 Total: 25.26 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.83 Total: -39.83 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.09 Total: -73.61 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.57 Total: -11.83 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -58.83 3.47 -55.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688487928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.404 kcal (2) G-P(sol) polarization free energy of solvation -58.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds