Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48496 * 109.46901 * 239.99829 * 3 2 1 5 5 H 1.48496 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46976 * 119.99887 * 3 2 1 7 7 C 1.37881 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99655 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46883 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.47817 * 111.00338 * 49.43031 * 11 10 9 13 13 C 1.52517 * 112.01062 * 180.42421 * 12 11 10 14 14 C 1.53953 * 111.62911 * 307.52207 * 13 12 11 15 15 C 1.51763 * 106.55112 * 55.16467 * 14 13 12 16 16 H 1.09007 * 110.92471 * 57.54571 * 15 14 13 17 17 C 1.53059 * 116.75387 * 186.85167 * 15 14 13 18 18 O 1.44952 * 103.75365 * 154.29991 * 17 15 14 19 19 C 1.44495 * 109.64439 * 335.36247 * 18 17 15 20 20 C 1.44971 * 111.00269 * 170.00028 * 11 10 9 21 21 H 1.09002 * 109.74898 * 289.59480 * 20 11 10 22 22 H 0.96996 * 120.00314 * 0.02562 * 1 2 3 23 23 H 1.08990 * 109.47407 * 60.00165 * 9 7 2 24 24 H 1.08997 * 109.47172 * 299.99689 * 9 7 2 25 25 H 1.09001 * 109.47345 * 59.99627 * 10 9 7 26 26 H 1.08997 * 109.46966 * 299.99819 * 10 9 7 27 27 H 1.08996 * 108.97510 * 301.07893 * 12 11 10 28 28 H 1.09003 * 108.96579 * 59.85928 * 12 11 10 29 29 H 1.08994 * 109.05064 * 68.08133 * 13 12 11 30 30 H 1.09001 * 109.04867 * 186.97535 * 13 12 11 31 31 H 1.09000 * 110.03440 * 174.42418 * 14 13 12 32 32 H 1.09000 * 110.03564 * 295.90819 * 14 13 12 33 33 H 1.09001 * 110.56845 * 272.87046 * 17 15 14 34 34 H 1.09008 * 110.56727 * 35.58351 * 17 15 14 35 35 H 1.09003 * 110.08865 * 237.96797 * 19 18 17 36 36 H 1.09000 * 110.10843 * 116.33974 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 0.4690 -4.9440 -1.0487 13 6 -0.3155 -6.2519 -1.0629 14 6 0.6188 -7.4731 -1.1403 15 6 1.5867 -7.3513 0.0222 16 1 1.0517 -7.3003 0.9706 17 6 2.7307 -8.3668 0.0756 18 8 3.7658 -7.6808 0.8233 19 6 3.5867 -6.2521 0.7023 20 6 2.4053 -6.0505 -0.2351 21 1 2.7534 -6.0325 -1.2679 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8718 -3.6043 -0.8894 27 1 -0.2207 -4.1190 -0.8707 28 1 0.9431 -4.8059 -2.0204 29 1 -0.9131 -6.3182 -0.1538 30 1 -0.9811 -6.2581 -1.9260 31 1 0.0401 -8.3924 -1.0496 32 1 1.1652 -7.4661 -2.0834 33 1 2.4164 -9.2707 0.5975 34 1 3.0767 -8.6071 -0.9298 35 1 4.4825 -5.7969 0.2798 36 1 3.3693 -5.8178 1.6781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690706093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -70.133954 kcal Electronic energy + Delta-G solvation = -16144.240828 eV Core-core repulsion = 13626.941863 eV Total energy + Delta-G solvation = -2517.298965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.50843 -38.33699 -35.85942 -34.52445 -32.08486 -31.30537 -29.08335 -26.92907 -25.66200 -23.63180 -22.55640 -21.34283 -20.89843 -18.62937 -17.39683 -17.00321 -16.55526 -16.23590 -16.07437 -15.77136 -14.95272 -14.77830 -14.54555 -14.20903 -13.85229 -13.53503 -13.45747 -13.07150 -12.84283 -12.46503 -12.33036 -12.07009 -11.91095 -11.74276 -11.67076 -11.45347 -11.17085 -10.92020 -10.58745 -10.55619 -9.33237 -8.22303 -6.33789 1.39173 1.42123 1.50106 2.38464 2.73096 3.00008 3.11142 3.27731 3.79174 3.92412 4.10320 4.14625 4.16772 4.29748 4.36752 4.45087 4.50616 4.67207 4.73244 4.79390 4.85510 4.87173 4.96248 4.97889 5.03562 5.14106 5.24153 5.39840 5.44323 5.60435 5.75276 5.82195 6.00103 6.23857 6.27062 6.82136 7.35373 8.89455 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042608 B = 0.006368 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.003193 B = 4395.678866 C = 4931.727838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.072 3.928 11 N -0.518 5.518 12 C 0.048 3.952 13 C -0.112 4.112 14 C -0.097 4.097 15 C -0.116 4.116 16 H 0.087 0.913 17 C 0.058 3.942 18 O -0.404 6.404 19 C 0.065 3.935 20 C 0.035 3.965 21 H 0.045 0.955 22 H 0.264 0.736 23 H 0.001 0.999 24 H -0.007 1.007 25 H 0.064 0.936 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -15.836 -2.689 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.055 4.055 11 N -0.243 5.243 12 C -0.079 4.079 13 C -0.150 4.150 14 C -0.134 4.134 15 C -0.135 4.135 16 H 0.105 0.895 17 C -0.018 4.018 18 O -0.323 6.323 19 C -0.012 4.012 20 C -0.074 4.074 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.263 -15.879 -2.096 16.175 hybrid contribution 0.422 1.629 -0.807 1.867 sum 2.685 -14.249 -2.903 14.788 Atomic orbital electron populations 1.70084 1.07766 1.27918 1.51242 1.25937 0.95752 1.03248 0.94511 0.85498 0.78295 0.78070 0.79174 1.19202 1.20682 1.19197 1.21591 0.93507 0.92324 1.51230 0.92294 1.19007 0.94196 0.91942 0.95309 1.22062 0.95905 0.88503 0.99015 1.62557 1.12621 1.02237 1.46926 1.22241 0.94451 0.99496 0.91731 1.21608 0.97921 0.92366 1.03061 1.21391 0.96779 0.98553 0.96719 1.22675 0.96699 0.92994 1.01085 0.89495 1.23252 0.85848 0.95436 0.97255 1.88852 1.52570 1.17347 1.73533 1.22588 0.96928 0.82067 0.99598 1.22784 0.93584 0.93282 0.97799 0.93723 0.92678 0.98049 0.98852 0.91720 0.96218 0.92094 0.95822 0.91620 0.89650 0.88563 0.91186 0.87377 0.90603 0.90641 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.76 4.37 29.85 0.13 1.89 16 10 C 0.07 3.13 4.79 86.30 0.41 3.55 16 11 N -0.52 -19.00 4.90 -870.08 -4.26 -23.26 16 12 C 0.05 1.67 4.69 85.97 0.40 2.07 16 13 C -0.11 -2.79 5.97 30.76 0.18 -2.60 16 14 C -0.10 -1.92 5.77 30.51 0.18 -1.75 16 15 C -0.12 -2.74 2.76 -10.20 -0.03 -2.76 16 16 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 17 C 0.06 1.21 7.42 72.00 0.53 1.74 16 18 O -0.40 -11.30 11.47 -148.98 -1.71 -13.01 16 19 C 0.07 1.91 6.93 71.70 0.50 2.40 16 20 C 0.04 1.05 1.86 45.98 0.09 1.14 16 21 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.00 0.07 6.28 -2.39 -0.02 0.06 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.06 2.77 7.87 -2.39 -0.02 2.75 16 26 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 27 H 0.06 2.49 6.11 -2.39 -0.01 2.47 16 28 H 0.02 0.82 8.07 -2.39 -0.02 0.80 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.32 7.98 -2.39 -0.02 1.30 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -64.76 281.09 0.46 -64.30 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.03 Total: 7.00 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.09 Total: -24.96 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.97 Total: -79.75 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.71 Total: -13.01 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.76 0.46 -64.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690706093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.835 kcal (2) G-P(sol) polarization free energy of solvation -64.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds