Wall clock time and date at job start Mon Mar 30 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08996 * 110.63335 * 303.10578 * 9 7 2 11 11 C 1.55137 * 110.70655 * 66.40643 * 9 7 2 12 12 C 1.54911 * 101.65798 * 154.03356 * 11 9 7 13 13 N 1.47849 * 104.78877 * 322.92879 * 12 11 9 14 14 C 1.46901 * 110.99413 * 146.36638 * 13 12 11 15 15 C 1.52998 * 109.47787 * 49.15351 * 14 13 12 16 16 O 1.42901 * 112.84754 * 55.32906 * 15 14 13 17 17 C 1.53781 * 113.61272 * 284.14113 * 15 14 13 18 18 C 1.53956 * 87.01544 * 220.04437 * 17 15 14 19 19 C 1.53779 * 113.61601 * 186.52703 * 15 14 13 20 20 C 1.47437 * 108.57098 * 24.09726 * 13 12 11 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.09000 * 110.98990 * 272.12265 * 11 9 7 23 23 H 1.09003 * 110.99423 * 35.93624 * 11 9 7 24 24 H 1.08999 * 110.37290 * 204.09933 * 12 11 9 25 25 H 1.08999 * 110.37174 * 81.75466 * 12 11 9 26 26 H 1.09005 * 109.46965 * 169.15543 * 14 13 12 27 27 H 1.09002 * 109.46966 * 289.15016 * 14 13 12 28 28 H 0.96703 * 113.99890 * 180.02562 * 16 15 14 29 29 H 1.09001 * 113.61184 * 334.55803 * 17 15 14 30 30 H 1.08999 * 113.61705 * 105.46833 * 17 15 14 31 31 H 1.08998 * 113.53579 * 270.80749 * 18 17 15 32 32 H 1.08998 * 113.66845 * 139.93018 * 18 17 15 33 33 H 1.08999 * 113.61159 * 254.52499 * 19 15 14 34 34 H 1.08997 * 113.61347 * 25.43767 * 19 15 14 35 35 H 1.09004 * 109.88664 * 239.60768 * 20 13 12 36 36 H 1.09000 * 109.89105 * 118.41769 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.5801 -2.5515 0.8626 11 6 0.4681 -2.6864 -1.3210 12 6 0.3672 -4.2296 -1.4097 13 7 1.6583 -4.7231 -0.8847 14 6 1.4847 -5.9958 -0.1719 15 6 0.6696 -6.9584 -1.0379 16 8 1.2408 -7.1595 -2.3322 17 6 -0.8334 -6.6347 -1.0714 18 6 -1.0799 -8.1527 -1.0005 19 6 0.2946 -8.2657 -0.3201 20 6 2.2283 -3.6935 0.0035 21 1 -0.4850 0.8401 0.0004 22 1 -0.5213 -2.2335 -1.2575 23 1 1.0273 -2.2824 -2.1649 24 1 0.2343 -4.5423 -2.4454 25 1 -0.4562 -4.5921 -0.7943 26 1 2.4618 -6.4322 0.0355 27 1 0.9596 -5.8180 0.7666 28 1 0.7383 -7.7654 -2.8940 29 1 -1.1832 -6.0941 -0.1919 30 1 -1.1616 -6.1813 -2.0066 31 1 -1.1239 -8.6326 -1.9782 32 1 -1.9116 -8.4312 -0.3534 33 1 0.8755 -9.1270 -0.6499 34 1 0.2536 -8.1717 0.7650 35 1 3.2008 -3.3762 -0.3729 36 1 2.3306 -4.0904 1.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691205346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:57 Heat of formation + Delta-G solvation = -44.214789 kcal Electronic energy + Delta-G solvation = -16247.355847 eV Core-core repulsion = 13731.180822 eV Total energy + Delta-G solvation = -2516.175025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22798 -39.02748 -35.19428 -35.01542 -32.45206 -30.16761 -28.30058 -26.87500 -25.78701 -23.69979 -21.42987 -21.24417 -20.55662 -18.57416 -17.70535 -17.13826 -16.50538 -16.12401 -15.86376 -15.17121 -14.62026 -14.35303 -14.16127 -13.98296 -13.79072 -13.23663 -12.97203 -12.92791 -12.87543 -12.61036 -12.36044 -12.06096 -11.85407 -11.67213 -11.49043 -11.30731 -10.89747 -10.77894 -10.56868 -10.48441 -9.03045 -8.14957 -6.24519 1.41163 1.43162 1.50704 2.42600 3.08658 3.16229 3.32196 3.57123 3.73846 3.82698 3.94527 4.19454 4.32965 4.38700 4.55147 4.65260 4.73286 4.75192 4.78624 4.85625 4.95322 4.99255 5.06414 5.09168 5.14268 5.27540 5.37005 5.44297 5.56668 5.71407 5.86404 6.20003 6.31855 6.38045 6.83510 6.98204 7.42616 8.94602 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.061584 B = 0.006177 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.556292 B = 4532.045498 C = 4682.525264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.028 3.972 10 H 0.001 0.999 11 C -0.101 4.101 12 C 0.052 3.948 13 N -0.530 5.530 14 C 0.067 3.933 15 C 0.113 3.887 16 O -0.543 6.543 17 C -0.176 4.176 18 C -0.133 4.133 19 C -0.158 4.158 20 C 0.056 3.944 21 H 0.261 0.739 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -15.877 -1.586 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.008 3.992 10 H 0.020 0.980 11 C -0.139 4.139 12 C -0.075 4.075 13 N -0.254 5.254 14 C -0.061 4.061 15 C 0.071 3.929 16 O -0.350 6.350 17 C -0.213 4.213 18 C -0.170 4.170 19 C -0.196 4.196 20 C -0.072 4.072 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.234 0.766 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.599 -15.453 -1.761 15.635 hybrid contribution -0.641 1.047 0.574 1.356 sum -2.240 -14.406 -1.188 14.627 Atomic orbital electron populations 1.70075 1.07288 1.27409 1.51174 1.25781 0.95718 1.02529 0.94598 0.85625 0.78391 0.78830 0.78903 1.19708 1.20827 1.19456 1.21415 0.92932 0.91724 1.50977 0.92793 1.19768 0.93225 0.92947 0.93221 0.98041 1.22450 0.99283 0.93728 0.98486 1.23223 0.90576 0.94240 0.99471 1.63583 1.24276 1.02843 1.34672 1.22242 1.00108 0.89666 0.94086 1.22270 0.91341 0.94890 0.84396 1.86609 1.53741 1.69451 1.25189 1.23940 0.96707 0.97994 1.02682 1.22916 0.97450 0.94719 1.01963 1.23634 0.97519 0.97312 1.01179 1.22812 0.98691 0.91832 0.93826 0.92985 0.93542 0.94678 0.91145 0.92720 0.90674 0.93588 0.76646 0.90266 0.91022 0.88410 0.90043 0.89668 0.88947 0.92468 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 12.47 21.45 0.27 -54.27 16 2 C 0.01 0.72 5.36 84.66 0.45 1.17 16 3 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.53 -30.42 8.47 25.60 0.22 -30.20 16 8 H 0.05 3.03 7.53 -2.92 -0.02 3.01 16 9 C 0.03 1.46 2.78 -10.36 -0.03 1.43 16 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 11 C -0.10 -4.99 5.94 31.98 0.19 -4.80 16 12 C 0.05 2.08 4.78 86.77 0.41 2.49 16 13 N -0.53 -21.12 5.20 -885.52 -4.60 -25.72 16 14 C 0.07 2.14 4.62 86.30 0.40 2.54 16 15 C 0.11 2.87 1.14 -10.27 -0.01 2.85 16 16 O -0.54 -14.52 13.38 -148.98 -1.99 -16.52 16 17 C -0.18 -4.10 4.92 31.18 0.15 -3.94 16 18 C -0.13 -2.17 7.76 31.18 0.24 -1.93 16 19 C -0.16 -2.91 7.44 31.12 0.23 -2.68 16 20 C 0.06 2.50 6.46 86.65 0.56 3.06 16 21 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 22 H 0.05 2.44 7.75 -2.39 -0.02 2.43 16 23 H 0.03 1.83 8.04 -2.39 -0.02 1.81 16 24 H 0.07 2.69 7.75 -2.39 -0.02 2.67 16 25 H 0.05 2.03 4.89 -2.39 -0.01 2.02 16 26 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.05 1.44 7.90 -2.39 -0.02 1.42 16 28 H 0.38 6.68 8.33 -74.06 -0.62 6.06 16 29 H 0.08 2.03 7.06 -2.39 -0.02 2.01 16 30 H 0.07 1.75 7.37 -2.39 -0.02 1.73 16 31 H 0.10 1.23 7.80 -2.39 -0.02 1.21 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.06 2.67 7.63 -2.38 -0.02 2.65 16 36 H 0.04 1.80 7.49 -2.39 -0.02 1.78 16 Total: -1.00 -64.82 280.09 -1.04 -65.86 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.44 Total: 14.05 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 2.82 Total: -30.00 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -4.33 Total: -79.99 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.99 Total: -16.52 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.82 -1.04 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691205346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.643 kcal (2) G-P(sol) polarization free energy of solvation -64.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds