Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99626 * 2 1 4 4 H 1.48501 * 109.46959 * 89.99680 * 3 2 1 5 5 H 1.48499 * 109.47245 * 329.99983 * 3 2 1 6 6 H 1.48494 * 109.47075 * 210.00168 * 3 2 1 7 7 C 1.37873 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00290 * 342.99417 * 7 2 1 9 9 C 1.50706 * 119.99815 * 162.98837 * 7 2 1 10 10 C 1.53119 * 109.52236 * 294.38777 * 9 7 2 11 11 C 1.53047 * 109.27255 * 182.50156 * 10 9 7 12 12 N 1.46852 * 109.57376 * 59.08496 * 11 10 9 13 13 C 1.46893 * 110.99841 * 174.19462 * 12 11 10 14 14 H 1.09004 * 112.84890 * 169.54479 * 13 12 11 15 15 C 1.53779 * 113.61824 * 38.34036 * 13 12 11 16 16 C 1.53779 * 87.08548 * 220.01771 * 15 13 12 17 17 C 1.53787 * 113.61490 * 300.73418 * 13 12 11 18 18 H 1.08997 * 113.61164 * 25.43298 * 17 13 12 19 19 O 1.42898 * 113.61657 * 254.53235 * 17 13 12 20 20 C 1.46847 * 111.19757 * 298.28900 * 12 11 10 21 21 C 1.53032 * 109.52548 * 61.74118 * 20 12 11 22 22 H 0.97002 * 119.99758 * 174.71541 * 1 2 3 23 23 H 1.09001 * 109.51765 * 54.51082 * 9 7 2 24 24 H 1.08999 * 109.50556 * 302.37731 * 10 9 7 25 25 H 1.08993 * 109.50573 * 62.49682 * 10 9 7 26 26 H 1.08998 * 109.41198 * 299.06593 * 11 10 9 27 27 H 1.08993 * 109.45359 * 179.12105 * 11 10 9 28 28 H 1.09000 * 113.61589 * 334.57211 * 15 13 12 29 29 H 1.09004 * 113.61108 * 105.38760 * 15 13 12 30 30 H 1.09002 * 113.61144 * 139.97777 * 16 15 13 31 31 H 1.08994 * 113.61579 * 270.80195 * 16 15 13 32 32 H 0.96697 * 114.00247 * 179.97438 * 19 17 13 33 33 H 1.09003 * 109.45933 * 301.72741 * 20 12 11 34 34 H 1.09000 * 109.46434 * 181.76014 * 20 12 11 35 35 H 1.08998 * 109.50826 * 180.87766 * 21 20 12 36 36 H 1.09004 * 109.50151 * 60.76399 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.5001 -2.1088 0.2745 9 6 3.4622 -1.2226 -0.3813 10 6 3.6128 -0.8359 -1.8552 11 6 5.0877 -0.9273 -2.2533 12 7 5.5724 -2.2961 -2.0346 13 6 6.9446 -2.4548 -2.5344 14 1 7.4001 -3.3968 -2.2288 15 6 7.8376 -1.2284 -2.2830 16 6 8.4191 -1.4620 -3.6873 17 6 7.0912 -2.1585 -4.0363 18 1 6.3310 -1.4802 -4.4237 19 8 7.2516 -3.3304 -4.8381 20 6 5.4818 -2.6714 -0.6178 21 6 4.0186 -2.6336 -0.1712 22 1 -0.4850 -0.8365 -0.0774 23 1 4.0150 -0.5170 0.2388 24 1 3.0274 -1.5177 -2.4720 25 1 3.2578 0.1841 -2.0018 26 1 5.6704 -0.2343 -1.6464 27 1 5.1963 -0.6676 -3.3063 28 1 7.2819 -0.2953 -2.1901 29 1 8.5607 -1.3721 -1.4801 30 1 8.5913 -0.5427 -4.2470 31 1 9.2792 -2.1315 -3.6979 32 1 7.3439 -3.1505 -5.7837 33 1 6.0627 -1.9703 -0.0185 34 1 5.8768 -3.6783 -0.4828 35 1 3.9533 -2.8971 0.8844 36 1 3.4397 -3.3446 -0.7607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704102761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -29.710252 kcal Electronic energy + Delta-G solvation = -16332.473369 eV Core-core repulsion = 13816.927308 eV Total energy + Delta-G solvation = -2515.546061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08306 -37.29296 -34.96319 -33.04205 -31.01929 -30.16653 -26.17230 -24.80270 -23.59589 -22.60751 -21.34275 -19.23937 -18.31215 -17.71014 -17.46458 -16.13028 -15.04501 -14.34293 -14.07514 -14.03652 -13.44822 -13.25413 -12.82316 -12.74857 -12.13663 -11.94241 -11.73201 -11.58385 -11.33164 -11.22712 -10.58782 -10.47584 -10.37732 -10.00227 -9.84471 -9.67793 -9.51814 -9.26332 -8.67870 -8.20720 -7.83978 -6.37008 -3.99357 3.42702 3.43981 3.60506 4.00435 4.33479 4.54710 4.58458 4.73498 4.88116 4.90965 5.30035 5.42086 5.55789 5.60842 5.61912 5.73934 5.78916 5.90615 5.93854 6.06506 6.14651 6.19482 6.34264 6.47363 6.51512 6.81027 6.91779 7.04864 7.32147 7.47774 7.60522 7.64266 7.70239 8.24802 8.44715 8.97245 9.68158 10.99830 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.007458 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.409940 B = 3753.456353 C = 3940.362244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 1.043 2.957 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.594 4.594 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.112 4.112 11 C 0.050 3.950 12 N -0.524 5.524 13 C 0.078 3.922 14 H 0.105 0.895 15 C -0.182 4.182 16 C -0.167 4.167 17 C 0.083 3.917 18 H 0.086 0.914 19 O -0.557 6.557 20 C 0.060 3.940 21 C -0.098 4.098 22 H 0.267 0.733 23 H 0.016 0.984 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.373 0.627 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.229 -1.758 -7.129 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.872 3.128 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.632 4.632 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.150 4.150 11 C -0.077 4.077 12 N -0.246 5.246 13 C -0.032 4.032 14 H 0.123 0.877 15 C -0.221 4.221 16 C -0.205 4.205 17 C 0.024 3.976 18 H 0.104 0.896 19 O -0.361 6.361 20 C -0.068 4.068 21 C -0.136 4.136 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.220 0.780 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.641 -0.739 -6.722 17.040 hybrid contribution 0.749 -0.812 -0.154 1.115 sum 16.390 -1.551 -6.876 17.841 Atomic orbital electron populations 1.70796 1.07206 1.30425 1.46127 1.25746 0.96118 1.02397 0.93198 0.84105 0.75818 0.75872 0.77033 1.21528 1.21438 1.19758 1.22020 0.94474 0.96193 1.50499 0.92741 1.19041 0.97115 0.92167 0.91519 1.22051 0.91856 1.00898 1.00208 1.22347 0.98277 0.87774 0.99281 1.61816 1.18979 1.25239 1.18615 1.23304 0.88582 0.98033 0.93238 0.87721 1.23473 1.00364 1.00934 0.97333 1.23495 0.98567 1.00943 0.97521 1.23734 0.95451 0.86851 0.91595 0.89638 1.86534 1.95682 1.32329 1.21591 1.22141 0.98971 0.98900 0.86772 1.21529 0.92539 1.00064 0.99440 0.92268 0.96598 0.92103 0.92444 0.95107 0.92216 0.88939 0.91007 0.91306 0.89565 0.78050 0.95514 0.92039 0.92694 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.70 55.43 0.76 -27.57 16 2 C 0.03 0.86 5.35 -17.82 -0.10 0.77 16 3 Si 1.04 25.28 26.31 -169.99 -4.47 20.80 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -5.98 5.50 56.52 0.31 -5.67 16 7 C -0.59 -16.85 8.83 -34.44 -0.30 -17.16 16 8 H 0.05 1.67 7.99 -52.49 -0.42 1.25 16 9 C 0.02 0.49 1.71 -91.65 -0.16 0.34 16 10 C -0.11 -2.46 4.82 -26.65 -0.13 -2.59 16 11 C 0.05 0.90 4.35 -3.83 -0.02 0.89 16 12 N -0.52 -9.07 4.78 -225.71 -1.08 -10.15 16 13 C 0.08 1.12 3.67 -66.90 -0.25 0.88 16 14 H 0.10 1.51 8.05 -51.93 -0.42 1.09 16 15 C -0.18 -2.24 7.36 -25.92 -0.19 -2.43 16 16 C -0.17 -1.78 7.92 -25.83 -0.20 -1.98 16 17 C 0.08 1.05 4.72 -25.82 -0.12 0.93 16 18 H 0.09 1.10 6.21 -51.93 -0.32 0.78 16 19 O -0.56 -7.01 13.67 -35.23 -0.48 -7.49 16 20 C 0.06 1.05 5.45 -3.84 -0.02 1.03 16 21 C -0.10 -2.05 5.32 -26.65 -0.14 -2.19 16 22 H 0.27 8.30 8.73 -40.82 -0.36 7.94 16 23 H 0.02 0.38 6.71 -51.93 -0.35 0.04 16 24 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 25 H 0.06 1.29 5.09 -51.93 -0.26 1.02 16 26 H 0.03 0.54 6.36 -51.93 -0.33 0.21 16 27 H 0.06 0.96 6.09 -51.93 -0.32 0.65 16 28 H 0.09 1.21 5.62 -51.93 -0.29 0.92 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.37 2.91 9.12 45.56 0.42 3.33 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 272.71 15.07 4.11 4.11 Total: -1.00 -31.32 272.71 -7.71 -39.03 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.92 Total: 2.78 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -1.63 Total: -21.51 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.32 Total: -37.72 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.48 Total: -7.49 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.47 Total: 20.80 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.32 -7.71 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704102761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.319 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds