Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99626 * 2 1 4 4 H 1.48501 * 109.46959 * 89.99680 * 3 2 1 5 5 H 1.48499 * 109.47245 * 329.99983 * 3 2 1 6 6 H 1.48494 * 109.47075 * 210.00168 * 3 2 1 7 7 C 1.37873 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00290 * 342.99417 * 7 2 1 9 9 C 1.50706 * 119.99815 * 162.98837 * 7 2 1 10 10 C 1.53119 * 109.52236 * 294.38777 * 9 7 2 11 11 C 1.53047 * 109.27255 * 182.50156 * 10 9 7 12 12 N 1.46852 * 109.57376 * 59.08496 * 11 10 9 13 13 C 1.46893 * 110.99841 * 174.19462 * 12 11 10 14 14 H 1.09004 * 112.84890 * 169.54479 * 13 12 11 15 15 C 1.53779 * 113.61824 * 38.34036 * 13 12 11 16 16 C 1.53779 * 87.08548 * 220.01771 * 15 13 12 17 17 C 1.53787 * 113.61490 * 300.73418 * 13 12 11 18 18 H 1.08997 * 113.61164 * 25.43298 * 17 13 12 19 19 O 1.42898 * 113.61657 * 254.53235 * 17 13 12 20 20 C 1.46847 * 111.19757 * 298.28900 * 12 11 10 21 21 C 1.53032 * 109.52548 * 61.74118 * 20 12 11 22 22 H 0.97002 * 119.99758 * 174.71541 * 1 2 3 23 23 H 1.09001 * 109.51765 * 54.51082 * 9 7 2 24 24 H 1.08999 * 109.50556 * 302.37731 * 10 9 7 25 25 H 1.08993 * 109.50573 * 62.49682 * 10 9 7 26 26 H 1.08998 * 109.41198 * 299.06593 * 11 10 9 27 27 H 1.08993 * 109.45359 * 179.12105 * 11 10 9 28 28 H 1.09000 * 113.61589 * 334.57211 * 15 13 12 29 29 H 1.09004 * 113.61108 * 105.38760 * 15 13 12 30 30 H 1.09002 * 113.61144 * 139.97777 * 16 15 13 31 31 H 1.08994 * 113.61579 * 270.80195 * 16 15 13 32 32 H 0.96697 * 114.00247 * 179.97438 * 19 17 13 33 33 H 1.09003 * 109.45933 * 301.72741 * 20 12 11 34 34 H 1.09000 * 109.46434 * 181.76014 * 20 12 11 35 35 H 1.08998 * 109.50826 * 180.87766 * 21 20 12 36 36 H 1.09004 * 109.50151 * 60.76399 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.5001 -2.1088 0.2745 9 6 3.4622 -1.2226 -0.3813 10 6 3.6128 -0.8359 -1.8552 11 6 5.0877 -0.9273 -2.2533 12 7 5.5724 -2.2961 -2.0346 13 6 6.9446 -2.4548 -2.5344 14 1 7.4001 -3.3968 -2.2288 15 6 7.8376 -1.2284 -2.2830 16 6 8.4191 -1.4620 -3.6873 17 6 7.0912 -2.1585 -4.0363 18 1 6.3310 -1.4802 -4.4237 19 8 7.2516 -3.3304 -4.8381 20 6 5.4818 -2.6714 -0.6178 21 6 4.0186 -2.6336 -0.1712 22 1 -0.4850 -0.8365 -0.0774 23 1 4.0150 -0.5170 0.2388 24 1 3.0274 -1.5177 -2.4720 25 1 3.2578 0.1841 -2.0018 26 1 5.6704 -0.2343 -1.6464 27 1 5.1963 -0.6676 -3.3063 28 1 7.2819 -0.2953 -2.1901 29 1 8.5607 -1.3721 -1.4801 30 1 8.5913 -0.5427 -4.2470 31 1 9.2792 -2.1315 -3.6979 32 1 7.3439 -3.1505 -5.7837 33 1 6.0627 -1.9703 -0.0185 34 1 5.8768 -3.6783 -0.4828 35 1 3.9533 -2.8971 0.8844 36 1 3.4397 -3.3446 -0.7607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704102761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -54.028233 kcal Electronic energy + Delta-G solvation = -16333.527876 eV Core-core repulsion = 13816.927308 eV Total energy + Delta-G solvation = -2516.600568 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21245 -38.66931 -36.14324 -34.84763 -32.79428 -31.71616 -27.84091 -25.75802 -24.96997 -24.15532 -22.92976 -20.70247 -19.68723 -19.62917 -18.68157 -17.29591 -16.16489 -15.87080 -15.52875 -15.33627 -15.25307 -14.70191 -14.51387 -13.97258 -13.72558 -13.29759 -13.08805 -12.81581 -12.70010 -12.53447 -12.26789 -12.04741 -11.95920 -11.48296 -11.38171 -11.14809 -11.03934 -10.75151 -10.64606 -10.43764 -9.11596 -8.70088 -6.33844 1.46823 1.52732 1.71693 2.52204 2.87066 3.07530 3.37992 3.66232 3.80794 3.87458 3.97016 4.12195 4.17773 4.29891 4.40340 4.58058 4.62895 4.72102 4.74996 4.79518 4.91786 4.93069 4.96786 5.00347 5.06978 5.21995 5.27987 5.41870 5.52215 5.75571 6.04051 6.16939 6.21385 6.27496 6.59597 6.95115 7.43397 8.64704 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.007458 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.409940 B = 3753.456353 C = 3940.362244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.024 4.024 3 Si 1.085 2.915 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.600 4.600 8 H 0.010 0.990 9 C 0.018 3.982 10 C -0.110 4.110 11 C 0.060 3.940 12 N -0.541 5.541 13 C 0.066 3.934 14 H 0.103 0.897 15 C -0.176 4.176 16 C -0.149 4.149 17 C 0.081 3.919 18 H 0.084 0.916 19 O -0.575 6.575 20 C 0.069 3.931 21 C -0.095 4.095 22 H 0.250 0.750 23 H 0.024 0.976 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.393 0.607 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.679 -0.587 -8.063 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.221 4.221 3 Si 0.906 3.094 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.156 1.156 7 C -0.638 4.638 8 H 0.029 0.971 9 C -0.001 4.001 10 C -0.148 4.148 11 C -0.067 4.067 12 N -0.264 5.264 13 C -0.043 4.043 14 H 0.121 0.879 15 C -0.216 4.216 16 C -0.187 4.187 17 C 0.022 3.978 18 H 0.101 0.899 19 O -0.383 6.383 20 C -0.059 4.059 21 C -0.133 4.133 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.242 0.758 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.117 0.399 -7.675 20.604 hybrid contribution -0.398 -1.331 0.134 1.395 sum 18.719 -0.931 -7.541 20.203 Atomic orbital electron populations 1.70939 1.08572 1.29400 1.49139 1.27308 0.96034 1.06523 0.92189 0.83623 0.76240 0.71356 0.78211 1.20171 1.21428 1.15648 1.22295 0.97158 0.94528 1.49827 0.97125 1.19042 0.93947 0.94193 0.92964 1.21891 0.94963 0.99818 0.98121 1.22197 0.95053 0.88667 1.00799 1.61750 1.21568 1.24862 1.18258 1.23491 0.87041 0.99102 0.94689 0.87882 1.23427 0.99997 0.99354 0.98785 1.23395 0.97542 1.01513 0.96270 1.23730 0.96715 0.86864 0.90523 0.89855 1.86481 1.95749 1.32724 1.23371 1.21995 0.96004 1.00437 0.87435 1.21431 0.95018 0.97710 0.99168 0.94128 0.95802 0.94511 0.92897 0.93839 0.90034 0.89308 0.90029 0.89461 0.88814 0.75757 0.94322 0.90230 0.92914 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.83 13.70 21.45 0.29 -60.54 16 2 C -0.02 -1.41 5.35 84.65 0.45 -0.95 16 3 Si 1.09 50.07 26.31 68.60 1.80 51.87 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.23 -9.23 5.50 99.48 0.55 -8.68 16 7 C -0.60 -35.17 8.83 25.60 0.23 -34.95 16 8 H 0.01 0.68 7.99 -2.91 -0.02 0.66 16 9 C 0.02 0.83 1.71 -11.46 -0.02 0.81 16 10 C -0.11 -4.69 4.82 30.65 0.15 -4.54 16 11 C 0.06 1.98 4.35 86.33 0.38 2.35 16 12 N -0.54 -17.40 4.78 -868.03 -4.15 -21.54 16 13 C 0.07 1.67 3.67 45.44 0.17 1.83 16 14 H 0.10 2.66 8.05 -2.38 -0.02 2.64 16 15 C -0.18 -3.59 7.36 31.12 0.23 -3.36 16 16 C -0.15 -2.51 7.92 31.18 0.25 -2.27 16 17 C 0.08 1.78 4.72 31.18 0.15 1.92 16 18 H 0.08 1.85 6.21 -2.39 -0.01 1.83 16 19 O -0.58 -12.83 13.67 -148.98 -2.04 -14.87 16 20 C 0.07 2.26 5.45 86.32 0.47 2.73 16 21 C -0.10 -3.98 5.32 30.64 0.16 -3.81 16 22 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 23 H 0.02 1.10 6.71 -2.39 -0.02 1.08 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 2.27 5.09 -2.39 -0.01 2.26 16 26 H 0.04 1.34 6.36 -2.39 -0.02 1.33 16 27 H 0.08 2.34 6.09 -2.39 -0.01 2.33 16 28 H 0.09 1.90 5.62 -2.39 -0.01 1.89 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.39 4.99 9.12 -74.06 -0.68 4.31 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 2.34 8.06 -2.39 -0.02 2.32 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -69.63 272.71 -1.29 -70.92 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.19 Total: 14.38 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 2.61 Total: -40.22 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.85 Total: -82.08 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -2.04 Total: -14.87 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.80 Total: 51.87 kcal Total: -69.63 -1.29 -70.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704102761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.887 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds