Wall clock time and date at job start Mon Mar 30 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99573 * 2 1 4 4 H 1.48501 * 109.46968 * 274.98388 * 3 2 1 5 5 H 1.48498 * 109.47444 * 34.99136 * 3 2 1 6 6 H 1.48499 * 109.46947 * 154.99377 * 3 2 1 7 7 C 1.37877 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99564 * 189.55066 * 7 2 1 9 9 C 1.50699 * 120.00031 * 9.55681 * 7 2 1 10 10 C 1.53122 * 109.52182 * 185.42507 * 9 7 2 11 11 C 1.53033 * 109.27629 * 182.37657 * 10 9 7 12 12 N 1.46840 * 109.52631 * 59.18224 * 11 10 9 13 13 C 1.46901 * 111.00306 * 174.15799 * 12 11 10 14 14 H 1.09000 * 112.85118 * 311.19760 * 13 12 11 15 15 C 1.53780 * 113.68922 * 82.46485 * 13 12 11 16 16 C 1.53779 * 87.07841 * 139.99494 * 15 13 12 17 17 C 1.53781 * 113.61508 * 180.02562 * 13 12 11 18 18 H 1.08998 * 113.61262 * 334.47577 * 17 13 12 19 19 O 1.42892 * 113.61833 * 105.38763 * 17 13 12 20 20 C 1.46839 * 111.19824 * 298.25684 * 12 11 10 21 21 C 1.53037 * 109.52528 * 61.73864 * 20 12 11 22 22 H 0.97000 * 120.00704 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.52509 * 305.55270 * 9 7 2 24 24 H 1.09007 * 109.50199 * 62.43937 * 10 9 7 25 25 H 1.08994 * 109.53760 * 302.34266 * 10 9 7 26 26 H 1.09005 * 109.46337 * 299.15985 * 11 10 9 27 27 H 1.09004 * 109.45040 * 179.19777 * 11 10 9 28 28 H 1.08997 * 113.61292 * 254.53995 * 15 13 12 29 29 H 1.08999 * 113.61850 * 25.44425 * 15 13 12 30 30 H 1.09002 * 113.61373 * 220.01615 * 16 15 13 31 31 H 1.09003 * 113.61983 * 89.11795 * 16 15 13 32 32 H 0.96697 * 114.00372 * 180.02562 * 19 17 13 33 33 H 1.09001 * 109.46872 * 181.75624 * 20 12 11 34 34 H 1.09004 * 109.46518 * 301.72641 * 20 12 11 35 35 H 1.08997 * 109.50687 * 180.87869 * 21 20 12 36 36 H 1.09003 * 109.53301 * 60.78290 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2004 0.1557 9 6 1.2667 -2.4902 -0.2156 10 6 2.2322 -3.6648 -0.0348 11 6 1.4918 -4.9748 -0.3135 12 7 0.9639 -4.9583 -1.6836 13 6 0.3668 -6.2541 -2.0335 14 1 1.0148 -7.0972 -1.7939 15 6 -1.0768 -6.4248 -1.5319 16 6 -1.3795 -7.1080 -2.8759 17 6 -0.2057 -6.3036 -3.4599 18 1 -0.4958 -5.3272 -3.8480 19 8 0.6002 -7.0488 -4.3747 20 6 -0.0015 -3.8673 -1.8676 21 6 0.6943 -2.5241 -1.6353 22 1 -0.4851 0.8400 -0.0004 23 1 0.4545 -2.5718 0.5067 24 1 2.6104 -3.6710 0.9875 25 1 3.0651 -3.5624 -0.7303 26 1 0.6679 -5.0835 0.3919 27 1 2.1802 -5.8122 -0.1995 28 1 -1.1650 -7.0910 -0.6738 29 1 -1.6052 -5.4816 -1.3928 30 1 -2.3477 -6.8354 -3.2960 31 1 -1.2090 -8.1846 -2.8667 32 1 0.2455 -7.0832 -5.2736 33 1 -0.3978 -3.9002 -2.8825 34 1 -0.8184 -3.9811 -1.1550 35 1 -0.0262 -1.7153 -1.7566 36 1 1.5025 -2.4028 -2.3566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704102767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:18 Heat of formation + Delta-G solvation = -31.738285 kcal Electronic energy + Delta-G solvation = -16241.583729 eV Core-core repulsion = 13725.949725 eV Total energy + Delta-G solvation = -2515.634003 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95211 -37.08390 -34.83944 -32.97189 -30.66720 -29.87441 -26.10014 -24.70442 -23.80545 -22.33042 -21.58500 -19.24682 -18.13929 -17.61224 -16.40884 -15.80982 -14.93458 -14.50813 -14.16364 -13.89542 -13.34754 -12.82417 -12.67198 -12.44143 -12.17973 -11.73535 -11.60657 -11.42678 -11.15299 -10.92618 -10.77140 -10.53478 -10.16556 -10.15151 -9.94701 -9.76496 -9.38664 -8.87157 -8.70706 -8.27140 -7.66823 -5.98275 -3.98677 3.33226 3.40379 3.43915 4.13388 4.46182 4.48192 4.69651 4.84330 5.00576 5.02251 5.33970 5.54257 5.70113 5.73338 5.76744 5.90586 5.92415 6.05461 6.16860 6.19697 6.32522 6.37917 6.59629 6.66885 6.85802 7.09413 7.15821 7.38271 7.62044 7.70876 7.72299 7.84422 8.04526 8.07388 8.50646 9.05276 9.64306 11.10987 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.006428 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.348221 B = 4354.655135 C = 4434.338169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.107 4.107 11 C 0.062 3.938 12 N -0.524 5.524 13 C 0.078 3.922 14 H 0.103 0.897 15 C -0.181 4.181 16 C -0.167 4.167 17 C 0.082 3.918 18 H 0.087 0.913 19 O -0.557 6.557 20 C 0.052 3.948 21 C -0.100 4.100 22 H 0.259 0.741 23 H 0.028 0.972 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.372 0.628 33 H 0.055 0.945 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -11.827 -5.410 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.145 4.145 11 C -0.065 4.065 12 N -0.247 5.247 13 C -0.032 4.032 14 H 0.121 0.879 15 C -0.220 4.220 16 C -0.206 4.206 17 C 0.022 3.978 18 H 0.105 0.895 19 O -0.362 6.362 20 C -0.075 4.075 21 C -0.138 4.138 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.328 -11.674 -5.170 12.978 hybrid contribution -0.704 0.871 0.015 1.120 sum -3.032 -10.803 -5.155 12.348 Atomic orbital electron populations 1.69967 1.05924 1.26358 1.50737 1.24961 0.94751 0.98989 0.95150 0.86677 0.80091 0.83887 0.77947 1.20753 1.21423 1.19915 1.21193 0.94080 0.91031 1.48649 0.92714 1.18694 0.94003 0.91840 0.92689 1.21689 0.99247 0.93826 0.99701 1.22082 0.97656 0.99324 0.87457 1.61865 1.35802 1.01727 1.25304 1.23292 0.93056 0.93656 0.93153 0.87872 1.23456 0.99553 1.01760 0.97260 1.23476 0.98988 1.00453 0.97652 1.23752 0.90287 0.94079 0.89645 0.89521 1.86532 1.51772 1.75085 1.22806 1.22370 0.93498 0.92813 0.98806 1.21605 0.99510 0.92787 0.99885 0.93164 0.95405 0.93038 0.92541 0.95591 0.92426 0.91115 0.88901 0.91378 0.89652 0.78154 0.92666 0.95160 0.90760 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 12.20 55.43 0.68 -25.00 16 2 C 0.06 1.75 5.23 -17.82 -0.09 1.65 16 3 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.18 8.48 -34.44 -0.29 -14.48 16 8 H 0.05 1.51 7.77 -52.49 -0.41 1.11 16 9 C 0.05 1.16 2.03 -91.65 -0.19 0.97 16 10 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 11 C 0.06 1.15 5.41 -3.84 -0.02 1.13 16 12 N -0.52 -9.56 4.79 -225.73 -1.08 -10.64 16 13 C 0.08 1.19 3.68 -66.90 -0.25 0.95 16 14 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 15 C -0.18 -2.42 7.36 -25.92 -0.19 -2.61 16 16 C -0.17 -1.93 7.91 -25.90 -0.20 -2.13 16 17 C 0.08 1.10 4.70 -25.90 -0.12 0.98 16 18 H 0.09 1.20 6.01 -51.93 -0.31 0.89 16 19 O -0.56 -7.38 13.67 -35.23 -0.48 -7.86 16 20 C 0.05 1.01 4.46 -3.84 -0.02 0.99 16 21 C -0.10 -2.33 5.19 -26.65 -0.14 -2.47 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.34 5.69 -51.93 -0.30 1.05 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.37 3.13 9.12 45.56 0.42 3.54 16 33 H 0.06 0.97 5.93 -51.93 -0.31 0.67 16 34 H 0.03 0.59 6.32 -51.93 -0.33 0.27 16 35 H 0.07 1.91 7.00 -51.93 -0.36 1.54 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -29.74 278.74 -8.32 -38.06 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.95 Total: 2.24 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.65 Total: -17.44 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.40 Total: -35.63 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.48 Total: -7.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.74 -8.32 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704102767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.322 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds