Wall clock time and date at job start Mon Mar 30 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99573 * 2 1 4 4 H 1.48501 * 109.46968 * 274.98388 * 3 2 1 5 5 H 1.48498 * 109.47444 * 34.99136 * 3 2 1 6 6 H 1.48499 * 109.46947 * 154.99377 * 3 2 1 7 7 C 1.37877 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99564 * 189.55066 * 7 2 1 9 9 C 1.50699 * 120.00031 * 9.55681 * 7 2 1 10 10 C 1.53122 * 109.52182 * 185.42507 * 9 7 2 11 11 C 1.53033 * 109.27629 * 182.37657 * 10 9 7 12 12 N 1.46840 * 109.52631 * 59.18224 * 11 10 9 13 13 C 1.46901 * 111.00306 * 174.15799 * 12 11 10 14 14 H 1.09000 * 112.85118 * 311.19760 * 13 12 11 15 15 C 1.53780 * 113.68922 * 82.46485 * 13 12 11 16 16 C 1.53779 * 87.07841 * 139.99494 * 15 13 12 17 17 C 1.53781 * 113.61508 * 180.02562 * 13 12 11 18 18 H 1.08998 * 113.61262 * 334.47577 * 17 13 12 19 19 O 1.42892 * 113.61833 * 105.38763 * 17 13 12 20 20 C 1.46839 * 111.19824 * 298.25684 * 12 11 10 21 21 C 1.53037 * 109.52528 * 61.73864 * 20 12 11 22 22 H 0.97000 * 120.00704 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.52509 * 305.55270 * 9 7 2 24 24 H 1.09007 * 109.50199 * 62.43937 * 10 9 7 25 25 H 1.08994 * 109.53760 * 302.34266 * 10 9 7 26 26 H 1.09005 * 109.46337 * 299.15985 * 11 10 9 27 27 H 1.09004 * 109.45040 * 179.19777 * 11 10 9 28 28 H 1.08997 * 113.61292 * 254.53995 * 15 13 12 29 29 H 1.08999 * 113.61850 * 25.44425 * 15 13 12 30 30 H 1.09002 * 113.61373 * 220.01615 * 16 15 13 31 31 H 1.09003 * 113.61983 * 89.11795 * 16 15 13 32 32 H 0.96697 * 114.00372 * 180.02562 * 19 17 13 33 33 H 1.09001 * 109.46872 * 181.75624 * 20 12 11 34 34 H 1.09004 * 109.46518 * 301.72641 * 20 12 11 35 35 H 1.08997 * 109.50687 * 180.87869 * 21 20 12 36 36 H 1.09003 * 109.53301 * 60.78290 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2004 0.1557 9 6 1.2667 -2.4902 -0.2156 10 6 2.2322 -3.6648 -0.0348 11 6 1.4918 -4.9748 -0.3135 12 7 0.9639 -4.9583 -1.6836 13 6 0.3668 -6.2541 -2.0335 14 1 1.0148 -7.0972 -1.7939 15 6 -1.0768 -6.4248 -1.5319 16 6 -1.3795 -7.1080 -2.8759 17 6 -0.2057 -6.3036 -3.4599 18 1 -0.4958 -5.3272 -3.8480 19 8 0.6002 -7.0488 -4.3747 20 6 -0.0015 -3.8673 -1.8676 21 6 0.6943 -2.5241 -1.6353 22 1 -0.4851 0.8400 -0.0004 23 1 0.4545 -2.5718 0.5067 24 1 2.6104 -3.6710 0.9875 25 1 3.0651 -3.5624 -0.7303 26 1 0.6679 -5.0835 0.3919 27 1 2.1802 -5.8122 -0.1995 28 1 -1.1650 -7.0910 -0.6738 29 1 -1.6052 -5.4816 -1.3928 30 1 -2.3477 -6.8354 -3.2960 31 1 -1.2090 -8.1846 -2.8667 32 1 0.2455 -7.0832 -5.2736 33 1 -0.3978 -3.9002 -2.8825 34 1 -0.8184 -3.9811 -1.1550 35 1 -0.0262 -1.7153 -1.7566 36 1 1.5025 -2.4028 -2.3566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704102767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:18 Heat of formation + Delta-G solvation = -53.136713 kcal Electronic energy + Delta-G solvation = -16242.511634 eV Core-core repulsion = 13725.949725 eV Total energy + Delta-G solvation = -2516.561909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.18028 -38.54675 -36.08746 -34.74850 -32.44874 -31.55172 -27.88813 -25.78664 -25.26805 -23.96255 -23.17972 -20.75057 -19.59348 -18.70198 -18.40482 -17.18419 -16.52272 -16.05695 -15.51907 -15.25921 -14.84045 -14.68887 -14.10427 -14.01124 -13.69314 -13.09848 -12.97314 -12.88429 -12.68075 -12.60191 -12.33565 -12.24124 -12.07570 -11.77814 -11.36708 -11.17089 -10.81188 -10.69242 -10.58960 -10.40509 -9.08787 -8.12412 -6.20182 1.40057 1.41800 1.51732 2.43963 2.91581 3.17432 3.38428 3.66486 3.81014 3.89021 3.97265 4.19951 4.27226 4.40591 4.51072 4.61432 4.71321 4.75982 4.83744 4.88262 4.97149 5.00162 5.04760 5.10200 5.23187 5.30369 5.39741 5.51898 5.62842 5.96009 5.99094 6.27715 6.32679 6.40499 6.91222 6.95806 7.46143 8.96109 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049603 B = 0.006428 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.348221 B = 4354.655135 C = 4434.338169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.100 4.100 11 C 0.068 3.932 12 N -0.534 5.534 13 C 0.065 3.935 14 H 0.107 0.893 15 C -0.178 4.178 16 C -0.148 4.148 17 C 0.083 3.917 18 H 0.082 0.918 19 O -0.573 6.573 20 C 0.066 3.934 21 C -0.091 4.091 22 H 0.260 0.740 23 H -0.005 1.005 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.044 0.956 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -13.046 -6.163 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.059 4.059 12 N -0.257 5.257 13 C -0.043 4.043 14 H 0.125 0.875 15 C -0.218 4.218 16 C -0.186 4.186 17 C 0.023 3.977 18 H 0.099 0.901 19 O -0.380 6.380 20 C -0.061 4.061 21 C -0.129 4.129 22 H 0.069 0.931 23 H 0.013 0.987 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.334 -12.912 -5.941 14.403 hybrid contribution -0.683 1.227 0.243 1.425 sum -3.016 -11.685 -5.698 13.345 Atomic orbital electron populations 1.70080 1.07221 1.27187 1.51310 1.25711 0.95574 1.02277 0.94790 0.85680 0.78952 0.79768 0.78102 1.20187 1.20909 1.19327 1.21560 0.94084 0.92677 1.48910 0.93239 1.18654 0.93599 0.92550 0.92687 1.21558 0.98409 0.94176 0.99680 1.21987 0.97825 0.98197 0.87889 1.61814 1.35991 1.02974 1.24954 1.23503 0.93998 0.91824 0.95013 0.87498 1.23390 0.97880 1.01661 0.98849 1.23380 0.98930 1.00672 0.95634 1.23668 0.90693 0.94461 0.88866 0.90062 1.86475 1.52368 1.74874 1.24331 1.22123 0.93056 0.91132 0.99829 1.21381 0.98509 0.94550 0.98490 0.93061 0.98717 0.92866 0.93204 0.95682 0.89920 0.90140 0.90212 0.89691 0.88454 0.75745 0.90745 0.95525 0.93714 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.10 12.20 21.45 0.26 -53.84 16 2 C 0.02 0.86 5.23 84.65 0.44 1.30 16 3 Si 0.95 44.42 29.55 68.60 2.03 46.45 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -30.31 8.48 25.60 0.22 -30.09 16 8 H 0.05 2.78 7.77 -2.91 -0.02 2.76 16 9 C 0.04 2.25 2.03 -11.46 -0.02 2.23 16 10 C -0.10 -4.32 5.32 30.65 0.16 -4.16 16 11 C 0.07 2.46 5.41 86.33 0.47 2.93 16 12 N -0.53 -18.83 4.79 -868.06 -4.15 -22.98 16 13 C 0.07 1.86 3.68 45.44 0.17 2.02 16 14 H 0.11 2.97 8.10 -2.39 -0.02 2.95 16 15 C -0.18 -4.35 7.36 31.12 0.23 -4.12 16 16 C -0.15 -2.92 7.91 31.13 0.25 -2.67 16 17 C 0.08 2.01 4.70 31.13 0.15 2.16 16 18 H 0.08 2.07 6.01 -2.39 -0.01 2.05 16 19 O -0.57 -13.56 13.67 -148.98 -2.04 -15.60 16 20 C 0.07 2.53 4.46 86.33 0.39 2.91 16 21 C -0.09 -4.36 5.19 30.65 0.16 -4.20 16 22 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 23 H -0.01 -0.31 8.09 -2.39 -0.02 -0.33 16 24 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.08 2.57 8.09 -2.38 -0.02 2.55 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.18 5.69 -2.39 -0.01 2.17 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.39 5.47 9.12 -74.06 -0.68 4.80 16 33 H 0.07 2.55 5.93 -2.39 -0.01 2.54 16 34 H 0.03 1.04 6.32 -2.38 -0.02 1.03 16 35 H 0.04 2.37 7.00 -2.39 -0.02 2.36 16 36 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -63.99 278.74 -0.92 -64.90 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.38 Total: 12.75 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.60 Total: -31.69 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -3.89 Total: -76.82 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -2.04 Total: -15.60 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.99 -0.92 -64.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704102767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.768 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds