Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00108 * 3 2 1 5 5 H 1.48500 * 109.46905 * 30.00086 * 3 2 1 6 6 H 1.48497 * 109.47078 * 150.00065 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.52995 * 109.47016 * 69.15688 * 14 13 12 16 16 O 1.42898 * 109.47285 * 65.00142 * 15 14 13 17 17 C 1.42898 * 114.00148 * 179.97438 * 16 15 14 18 18 C 1.52998 * 117.49986 * 218.74810 * 17 16 15 19 19 C 1.53001 * 117.49680 * 150.08709 * 17 16 15 20 20 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 21 21 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 23 23 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 24 24 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 25 25 H 1.08997 * 110.02694 * 141.76299 * 12 11 9 26 26 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 27 27 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 28 28 H 1.09002 * 109.47207 * 185.00525 * 15 14 13 29 29 H 1.08997 * 109.47312 * 304.99739 * 15 14 13 30 30 H 1.08998 * 115.54970 * 4.41935 * 17 16 15 31 31 H 1.09001 * 117.49680 * 0.02562 * 18 17 16 32 32 H 1.09001 * 117.50007 * 145.02307 * 18 17 16 33 33 H 1.09000 * 117.49445 * 214.98180 * 19 17 16 34 34 H 1.08998 * 117.49925 * 359.97438 * 19 17 16 35 35 H 1.09002 * 110.37464 * 94.73346 * 20 13 12 36 36 H 1.08999 * 110.37318 * 216.96123 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5649 -2.5521 -0.8459 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5623 -6.9627 1.7693 16 8 1.2261 -7.7014 0.5932 17 6 0.5008 -8.9055 0.8506 18 6 0.8402 -10.1304 -0.0010 19 6 -0.4777 -9.3842 -0.2238 20 6 2.2260 -3.7029 -0.0012 21 1 -0.4850 0.8401 -0.0004 22 1 -0.4934 -2.2583 1.3035 23 1 1.0714 -2.3069 2.1767 24 1 -0.5822 -4.5766 1.0863 25 1 0.5336 -4.5623 2.4788 26 1 3.1988 -5.9768 0.7738 27 1 2.6664 -5.1836 2.2757 28 1 2.1821 -7.5789 2.4206 29 1 0.6499 -6.6819 2.2953 30 1 0.2280 -9.0764 1.8919 31 1 1.6170 -10.0179 -0.7574 32 1 0.7902 -11.1073 0.4799 33 1 -1.3940 -9.8704 0.1108 34 1 -0.5685 -8.7804 -1.1268 35 1 3.1047 -3.4798 0.6040 36 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711746911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -35.760778 kcal Electronic energy + Delta-G solvation = -15560.314553 eV Core-core repulsion = 13044.506121 eV Total energy + Delta-G solvation = -2515.808432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02181 -39.04704 -36.10077 -34.94075 -32.65728 -30.00567 -29.09297 -26.18364 -23.66991 -23.23834 -22.77684 -21.51752 -21.17383 -18.52429 -18.02529 -16.87747 -16.68721 -16.40025 -16.09310 -15.30133 -14.88766 -14.51699 -14.25695 -13.97623 -13.72849 -13.18819 -13.00027 -12.82894 -12.71897 -12.43621 -12.36364 -12.24973 -11.79541 -11.79093 -11.52871 -11.29208 -11.10943 -10.91739 -10.50887 -9.94035 -9.10066 -8.14919 -6.25783 1.41454 1.41895 1.52397 2.41930 2.64764 2.98312 3.15594 3.21009 3.95286 3.99400 4.06163 4.12236 4.27489 4.34173 4.38520 4.46400 4.54325 4.62930 4.73127 4.76549 4.79645 4.84094 4.93726 5.04823 5.06939 5.23307 5.28801 5.31168 5.56925 5.77803 5.89237 6.06277 6.30025 6.36504 6.50542 6.84184 7.42315 8.95029 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.063748 B = 0.004977 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.127154 B = 5624.927515 C = 5725.010213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.002 0.998 11 C -0.112 4.112 12 C 0.052 3.948 13 N -0.534 5.534 14 C 0.048 3.952 15 C 0.075 3.925 16 O -0.369 6.369 17 C 0.000 4.000 18 C -0.182 4.182 19 C -0.191 4.191 20 C 0.059 3.941 21 H 0.261 0.739 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -16.454 5.288 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.020 0.980 11 C -0.152 4.152 12 C -0.076 4.076 13 N -0.259 5.259 14 C -0.080 4.080 15 C -0.001 4.001 16 O -0.288 6.288 17 C -0.058 4.058 18 C -0.219 4.219 19 C -0.228 4.228 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.507 -16.593 4.721 17.317 hybrid contribution 0.429 1.622 0.540 1.762 sum 1.936 -14.971 5.261 15.986 Atomic orbital electron populations 1.70100 1.07416 1.27388 1.51001 1.25793 0.95658 1.02592 0.94518 0.85554 0.78725 0.79071 0.78301 1.20099 1.20848 1.19031 1.21396 0.93003 0.91627 1.51186 0.92573 1.19721 0.93069 0.92146 0.93098 0.98020 1.22575 0.99896 0.93852 0.98835 1.22770 0.95488 0.93782 0.95532 1.63564 1.12202 1.17988 1.32127 1.22363 0.95739 0.92756 0.97153 1.22631 0.98732 0.91671 0.87080 1.87936 1.74238 1.34822 1.31787 1.22942 0.99619 0.86295 0.96959 1.23436 0.98611 0.96503 1.03354 1.23373 0.94917 1.03514 1.01032 1.22920 0.95674 0.90113 0.98090 0.92970 0.93818 0.94183 0.92125 0.91859 0.90421 0.92340 0.90447 0.92991 0.85563 0.89383 0.85993 0.86370 0.90053 0.94358 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 12.63 21.45 0.27 -54.32 16 2 C 0.01 0.76 5.38 84.65 0.46 1.21 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -30.08 8.51 25.60 0.22 -29.87 16 8 H 0.06 3.08 7.77 -2.91 -0.02 3.05 16 9 C 0.04 2.05 2.85 -10.05 -0.03 2.02 16 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 11 C -0.11 -5.41 5.91 31.88 0.19 -5.22 16 12 C 0.05 2.02 6.13 86.65 0.53 2.55 16 13 N -0.53 -20.79 5.11 -885.53 -4.53 -25.32 16 14 C 0.05 1.46 4.92 86.30 0.42 1.88 16 15 C 0.08 1.92 5.90 71.98 0.42 2.34 16 16 O -0.37 -10.92 10.54 -148.98 -1.57 -12.49 16 17 C 0.00 -0.01 6.44 30.59 0.20 0.19 16 18 C -0.18 -3.39 10.48 30.62 0.32 -3.07 16 19 C -0.19 -3.97 10.48 30.62 0.32 -3.65 16 20 C 0.06 2.62 6.12 86.77 0.53 3.15 16 21 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 22 H 0.04 2.28 7.85 -2.38 -0.02 2.26 16 23 H 0.04 1.93 8.04 -2.38 -0.02 1.92 16 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.06 2.09 6.90 -2.39 -0.02 2.07 16 26 H 0.08 2.32 8.08 -2.39 -0.02 2.31 16 27 H 0.06 1.65 7.98 -2.39 -0.02 1.63 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.29 6.99 -2.39 -0.02 1.27 16 30 H 0.13 2.15 7.93 -2.39 -0.02 2.13 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -64.17 294.94 0.81 -63.36 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.03 Total: 11.22 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 3.58 Total: -28.45 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -4.26 Total: -79.64 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.57 Total: -12.49 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.17 0.81 -63.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711746911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.599 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds