Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48494 * 109.47043 * 274.77221 * 3 2 1 5 5 H 1.48503 * 109.47031 * 34.77397 * 3 2 1 6 6 H 1.48501 * 109.46998 * 154.77278 * 3 2 1 7 7 C 1.38810 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 30.30902 * 7 2 1 9 9 N 1.36939 * 119.99998 * 210.29909 * 7 2 1 10 10 C 1.46499 * 119.99877 * 39.07994 * 9 7 2 11 11 C 1.53001 * 109.46960 * 96.08707 * 10 9 7 12 12 C 1.52997 * 109.47342 * 185.44893 * 11 10 9 13 13 H 1.09000 * 115.74206 * 329.40681 * 12 11 10 14 14 C 1.52997 * 117.77632 * 182.40789 * 12 11 10 15 15 O 1.42901 * 57.63723 * 253.16060 * 14 12 11 16 16 C 1.46504 * 119.99958 * 219.08143 * 9 7 2 17 17 C 1.54267 * 110.03495 * 57.17076 * 16 9 7 18 18 C 1.54880 * 104.19515 * 217.10489 * 17 16 9 19 19 C 1.54895 * 102.75216 * 37.93633 * 18 17 16 20 20 C 1.53875 * 110.03254 * 299.99671 * 16 9 7 21 21 H 0.96997 * 119.99838 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46937 * 336.09175 * 10 9 7 23 23 H 1.08994 * 109.47502 * 216.08701 * 10 9 7 24 24 H 1.09007 * 109.47362 * 65.45243 * 11 10 9 25 25 H 1.09002 * 109.47344 * 305.45474 * 11 10 9 26 26 H 1.09002 * 117.77364 * 0.02562 * 14 12 11 27 27 H 1.09001 * 117.77540 * 146.31811 * 14 12 11 28 28 H 1.09005 * 110.01032 * 178.60761 * 16 9 7 29 29 H 1.09006 * 110.48043 * 335.77913 * 17 16 9 30 30 H 1.08997 * 110.48693 * 98.42213 * 17 16 9 31 31 H 1.09007 * 110.75583 * 279.62475 * 18 17 16 32 32 H 1.09003 * 110.75906 * 156.25189 * 18 17 16 33 33 H 1.09000 * 110.48890 * 203.37712 * 19 18 17 34 34 H 1.09005 * 110.59131 * 80.79258 * 19 18 17 35 35 H 1.08996 * 110.03358 * 238.57205 * 20 16 9 36 36 H 1.08994 * 110.03165 * 359.95943 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3969 2.1046 -1.3952 5 1 1.5018 2.6214 0.7985 6 1 3.5946 1.4130 0.5967 7 6 2.0102 -1.2022 0.0005 8 1 1.5809 -2.0738 -0.4711 9 7 3.2393 -1.2830 0.5989 10 6 3.4891 -0.5763 1.8576 11 6 3.2864 -1.5372 3.0309 12 6 3.4136 -0.7685 4.3476 13 1 4.0872 0.0883 4.3324 14 6 3.2989 -1.5622 5.6505 15 8 2.2613 -0.6946 5.1895 16 6 4.3044 -2.0762 -0.0198 17 6 4.5719 -1.5746 -1.4539 18 6 4.8711 -2.8643 -2.2576 19 6 3.8790 -3.8854 -1.6474 20 6 3.8640 -3.5454 -0.1427 21 1 -0.4850 0.8400 0.0004 22 1 2.7956 0.2597 1.9487 23 1 4.5127 -0.2020 1.8673 24 1 4.0429 -2.3212 2.9934 25 1 2.2950 -1.9856 2.9662 26 1 3.1326 -2.6370 5.5776 27 1 3.8965 -1.2325 6.5004 28 1 5.2146 -2.0078 0.5763 29 1 3.6905 -1.0723 -1.8528 30 1 5.4330 -0.9066 -1.4700 31 1 5.9009 -3.1861 -2.1023 32 1 4.6678 -2.7146 -3.3180 33 1 4.2346 -4.9037 -1.8049 34 1 2.8854 -3.7584 -2.0772 35 1 4.5607 -4.1902 0.3928 36 1 2.8581 -3.6684 0.2585 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718560055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = 2.111570 kcal Electronic energy + Delta-G solvation = -16252.061399 eV Core-core repulsion = 13737.895236 eV Total energy + Delta-G solvation = -2514.166164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91666 -37.89249 -34.73087 -31.85518 -30.29006 -27.92931 -26.95879 -25.89225 -23.95597 -21.91464 -20.78923 -19.94848 -18.98215 -16.65768 -15.99502 -15.33627 -15.28601 -14.92745 -14.50648 -14.05912 -13.32572 -13.26670 -12.77464 -12.46156 -12.07099 -11.75349 -11.47150 -10.91705 -10.74103 -10.60514 -10.46412 -10.38396 -10.30789 -10.12223 -9.98349 -9.97417 -9.79684 -9.50489 -9.37555 -8.39622 -6.71166 -6.01222 -3.34598 3.39065 3.51693 3.54679 3.79164 4.50339 4.58791 4.86676 5.12304 5.25292 5.32437 5.38259 5.43332 5.51443 5.65809 5.83685 5.93590 5.98820 6.06101 6.21170 6.23495 6.31385 6.39439 6.43697 6.44320 6.54166 6.58452 6.75090 6.87296 6.94050 7.01420 7.17049 7.21478 8.09946 8.47861 9.07287 9.77813 10.21147 11.14660 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.011403 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.316781 B = 2454.916208 C = 3336.127449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.045 3.955 3 Si 0.850 3.150 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.267 4.267 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.153 3.847 11 C -0.127 4.127 12 C 0.003 3.997 13 H 0.117 0.883 14 C -0.052 4.052 15 O -0.358 6.358 16 C 0.171 3.829 17 C -0.136 4.136 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.134 4.134 21 H 0.262 0.738 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -4.579 3.566 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.157 4.157 3 Si 0.678 3.322 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.395 4.395 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.027 3.973 11 C -0.167 4.167 12 C -0.055 4.055 13 H 0.135 0.865 14 C -0.128 4.128 15 O -0.278 6.278 16 C 0.064 3.936 17 C -0.176 4.176 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.173 4.173 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.496 -4.335 3.618 11.919 hybrid contribution 0.222 1.110 0.035 1.133 sum 10.718 -3.225 3.653 11.773 Atomic orbital electron populations 1.70004 1.06287 1.26792 1.49443 1.25519 0.94804 0.97640 0.97707 0.87312 0.81701 0.85667 0.77550 1.21907 1.22283 1.18506 1.18512 0.91501 0.94928 1.34593 0.90590 1.44254 1.10142 1.57524 1.19826 1.21160 0.97807 0.93562 0.84748 1.22240 1.03533 0.99176 0.91792 1.23968 0.91059 1.00673 0.89807 0.86535 1.24250 0.95633 0.95216 0.97675 1.91698 1.27869 1.64246 1.43956 1.21058 0.89997 0.90334 0.92181 1.22817 1.01215 0.96357 0.97169 1.22408 0.98184 0.96640 0.98751 1.22250 0.99460 0.97204 0.96620 1.22583 1.01953 0.97493 0.95259 0.92797 0.92537 0.94731 0.91304 0.90114 0.87670 0.88000 0.93113 0.89737 0.93566 0.92739 0.92693 0.93340 0.91729 0.93738 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.97 55.49 0.78 -26.15 16 2 C 0.05 1.28 5.06 -17.43 -0.09 1.19 16 3 Si 0.85 21.57 26.30 -169.99 -4.47 17.10 16 4 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.26 -6.20 5.69 56.52 0.32 -5.87 16 7 C -0.27 -7.14 7.95 -15.06 -0.12 -7.26 16 8 H 0.08 2.21 7.39 -52.49 -0.39 1.82 16 9 N -0.60 -13.45 1.96 -164.39 -0.32 -13.78 16 10 C 0.15 3.21 3.71 -4.04 -0.01 3.20 16 11 C -0.13 -2.32 5.94 -26.73 -0.16 -2.48 16 12 C 0.00 0.04 6.60 -26.73 -0.18 -0.13 16 13 H 0.12 1.66 8.09 -51.93 -0.42 1.24 16 14 C -0.05 -0.70 11.41 37.16 0.42 -0.27 16 15 O -0.36 -6.85 14.48 -35.23 -0.51 -7.36 16 16 C 0.17 3.27 3.42 -66.81 -0.23 3.04 16 17 C -0.14 -2.53 6.41 -25.08 -0.16 -2.69 16 18 C -0.12 -1.90 6.91 -24.74 -0.17 -2.07 16 19 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 20 C -0.13 -2.36 6.19 -25.61 -0.16 -2.52 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.06 1.33 4.63 -51.93 -0.24 1.09 16 23 H 0.03 0.65 7.99 -51.93 -0.42 0.24 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 25 H 0.08 1.72 8.13 -51.93 -0.42 1.30 16 26 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 29 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.53 7.04 -51.93 -0.37 1.16 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -30.37 286.82 -7.27 -37.65 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.05 Total: 0.30 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.02 Total: -12.08 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.45 Total: -39.92 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.51 Total: -7.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.47 Total: 17.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.37 -7.27 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718560055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.757 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds