Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48494 * 109.47043 * 274.77221 * 3 2 1 5 5 H 1.48503 * 109.47031 * 34.77397 * 3 2 1 6 6 H 1.48501 * 109.46998 * 154.77278 * 3 2 1 7 7 C 1.38810 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 30.30902 * 7 2 1 9 9 N 1.36939 * 119.99998 * 210.29909 * 7 2 1 10 10 C 1.46499 * 119.99877 * 39.07994 * 9 7 2 11 11 C 1.53001 * 109.46960 * 96.08707 * 10 9 7 12 12 C 1.52997 * 109.47342 * 185.44893 * 11 10 9 13 13 H 1.09000 * 115.74206 * 329.40681 * 12 11 10 14 14 C 1.52997 * 117.77632 * 182.40789 * 12 11 10 15 15 O 1.42901 * 57.63723 * 253.16060 * 14 12 11 16 16 C 1.46504 * 119.99958 * 219.08143 * 9 7 2 17 17 C 1.54267 * 110.03495 * 57.17076 * 16 9 7 18 18 C 1.54880 * 104.19515 * 217.10489 * 17 16 9 19 19 C 1.54895 * 102.75216 * 37.93633 * 18 17 16 20 20 C 1.53875 * 110.03254 * 299.99671 * 16 9 7 21 21 H 0.96997 * 119.99838 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46937 * 336.09175 * 10 9 7 23 23 H 1.08994 * 109.47502 * 216.08701 * 10 9 7 24 24 H 1.09007 * 109.47362 * 65.45243 * 11 10 9 25 25 H 1.09002 * 109.47344 * 305.45474 * 11 10 9 26 26 H 1.09002 * 117.77364 * 0.02562 * 14 12 11 27 27 H 1.09001 * 117.77540 * 146.31811 * 14 12 11 28 28 H 1.09005 * 110.01032 * 178.60761 * 16 9 7 29 29 H 1.09006 * 110.48043 * 335.77913 * 17 16 9 30 30 H 1.08997 * 110.48693 * 98.42213 * 17 16 9 31 31 H 1.09007 * 110.75583 * 279.62475 * 18 17 16 32 32 H 1.09003 * 110.75906 * 156.25189 * 18 17 16 33 33 H 1.09000 * 110.48890 * 203.37712 * 19 18 17 34 34 H 1.09005 * 110.59131 * 80.79258 * 19 18 17 35 35 H 1.08996 * 110.03358 * 238.57205 * 20 16 9 36 36 H 1.08994 * 110.03165 * 359.95943 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3969 2.1046 -1.3952 5 1 1.5018 2.6214 0.7985 6 1 3.5946 1.4130 0.5967 7 6 2.0102 -1.2022 0.0005 8 1 1.5809 -2.0738 -0.4711 9 7 3.2393 -1.2830 0.5989 10 6 3.4891 -0.5763 1.8576 11 6 3.2864 -1.5372 3.0309 12 6 3.4136 -0.7685 4.3476 13 1 4.0872 0.0883 4.3324 14 6 3.2989 -1.5622 5.6505 15 8 2.2613 -0.6946 5.1895 16 6 4.3044 -2.0762 -0.0198 17 6 4.5719 -1.5746 -1.4539 18 6 4.8711 -2.8643 -2.2576 19 6 3.8790 -3.8854 -1.6474 20 6 3.8640 -3.5454 -0.1427 21 1 -0.4850 0.8400 0.0004 22 1 2.7956 0.2597 1.9487 23 1 4.5127 -0.2020 1.8673 24 1 4.0429 -2.3212 2.9934 25 1 2.2950 -1.9856 2.9662 26 1 3.1326 -2.6370 5.5776 27 1 3.8965 -1.2325 6.5004 28 1 5.2146 -2.0078 0.5763 29 1 3.6905 -1.0723 -1.8528 30 1 5.4330 -0.9066 -1.4700 31 1 5.9009 -3.1861 -2.1023 32 1 4.6678 -2.7146 -3.3180 33 1 4.2346 -4.9037 -1.8049 34 1 2.8854 -3.7584 -2.0772 35 1 4.5607 -4.1902 0.3928 36 1 2.8581 -3.6684 0.2585 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718560055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -17.934734 kcal Electronic energy + Delta-G solvation = -16252.930672 eV Core-core repulsion = 13737.895236 eV Total energy + Delta-G solvation = -2515.035437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18926 -39.43900 -36.36653 -33.87692 -31.90299 -29.33228 -28.51595 -27.36680 -25.55256 -23.54211 -22.15986 -21.28600 -20.65778 -18.42652 -17.45900 -16.97554 -16.82388 -16.33762 -16.00630 -15.59741 -14.91167 -14.79752 -14.54276 -13.95473 -13.89068 -13.50783 -12.82277 -12.64179 -12.32583 -12.29954 -12.12890 -11.78347 -11.71292 -11.67353 -11.47882 -11.32769 -11.29612 -11.13974 -10.94733 -10.51596 -8.60077 -8.20527 -5.48035 1.33793 1.41867 1.49971 2.47188 2.60707 3.01449 3.30290 3.48339 3.97435 4.00586 4.03080 4.15000 4.20979 4.35365 4.43483 4.67888 4.72254 4.76133 4.79682 4.87136 4.91956 4.97635 4.98219 5.03037 5.20336 5.24289 5.27736 5.34185 5.46550 5.55299 5.68732 5.71848 6.00876 6.30005 7.10522 7.75994 8.17249 9.00493 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.011403 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.316781 B = 2454.916208 C = 3336.127449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.017 4.017 3 Si 0.911 3.089 4 H -0.298 1.298 5 H -0.309 1.309 6 H -0.230 1.230 7 C -0.235 4.235 8 H 0.037 0.963 9 N -0.607 5.607 10 C 0.146 3.854 11 C -0.113 4.113 12 C -0.011 4.011 13 H 0.141 0.859 14 C -0.026 4.026 15 O -0.413 6.413 16 C 0.163 3.837 17 C -0.140 4.140 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.129 4.129 21 H 0.258 0.742 22 H 0.024 0.976 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.036 0.964 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.007 -5.246 4.581 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.213 4.213 3 Si 0.739 3.261 4 H -0.226 1.226 5 H -0.236 1.236 6 H -0.152 1.152 7 C -0.365 4.365 8 H 0.054 0.946 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.153 4.153 12 C -0.068 4.068 13 H 0.159 0.841 14 C -0.100 4.100 15 O -0.334 6.334 16 C 0.057 3.943 17 C -0.179 4.179 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.169 4.169 21 H 0.067 0.933 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.116 0.884 25 H 0.054 0.946 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.557 -5.021 4.644 16.084 hybrid contribution -0.991 1.158 -0.247 1.545 sum 13.566 -3.863 4.396 14.774 Atomic orbital electron populations 1.70127 1.08037 1.27072 1.53439 1.26073 0.95262 1.00877 0.99107 0.86329 0.81684 0.81284 0.76842 1.22644 1.23634 1.15242 1.18300 0.92782 0.93159 1.32241 0.94566 1.44382 1.09669 1.58027 1.20786 1.21269 0.98651 0.93203 0.84843 1.22000 1.01822 0.99241 0.92261 1.24040 0.90665 1.02412 0.89637 0.84133 1.24776 0.92784 0.95506 0.96978 1.91672 1.30197 1.65857 1.45720 1.21366 0.89922 0.90183 0.92810 1.22788 1.00072 0.97917 0.97094 1.22382 0.99559 0.94393 0.98524 1.22245 0.98474 0.99319 0.95504 1.22514 1.00467 0.97412 0.96476 0.93327 0.95741 0.91346 0.88402 0.94553 0.86468 0.84202 0.89858 0.94009 0.91736 0.89438 0.92119 0.90364 0.94740 0.90516 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.70 13.97 21.65 0.30 -60.40 16 2 C -0.02 -0.98 5.06 84.86 0.43 -0.55 16 3 Si 0.91 45.93 26.30 68.60 1.80 47.73 16 4 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 5 H -0.31 -16.06 7.11 99.48 0.71 -15.36 16 6 H -0.23 -10.24 5.69 99.48 0.57 -9.68 16 7 C -0.23 -13.05 7.95 84.03 0.67 -12.38 16 8 H 0.04 2.27 7.39 -2.91 -0.02 2.25 16 9 N -0.61 -27.02 1.96 -674.00 -1.32 -28.34 16 10 C 0.15 5.85 3.71 86.38 0.32 6.17 16 11 C -0.11 -3.96 5.94 30.59 0.18 -3.77 16 12 C -0.01 -0.32 6.60 30.59 0.20 -0.11 16 13 H 0.14 3.50 8.09 -2.39 -0.02 3.48 16 14 C -0.03 -0.61 11.41 71.98 0.82 0.21 16 15 O -0.41 -15.46 14.48 -148.98 -2.16 -17.62 16 16 C 0.16 5.80 3.42 45.72 0.16 5.96 16 17 C -0.14 -4.87 6.41 31.67 0.20 -4.67 16 18 C -0.11 -3.10 6.91 31.88 0.22 -2.88 16 19 C -0.12 -3.61 6.83 31.67 0.22 -3.40 16 20 C -0.13 -4.34 6.19 31.32 0.19 -4.15 16 21 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 22 H 0.02 1.13 4.63 -2.39 -0.01 1.12 16 23 H 0.07 2.30 7.99 -2.39 -0.02 2.28 16 24 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 25 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.47 7.90 -2.38 -0.02 2.45 16 29 H 0.04 1.81 7.01 -2.38 -0.02 1.79 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.50 7.04 -2.39 -0.02 1.48 16 Total: -1.00 -71.11 286.82 3.13 -67.98 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.89 Total: 10.22 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 3.61 Total: -19.58 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -1.02 Total: -88.74 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -2.16 Total: -17.62 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.80 Total: 47.73 kcal Total: -71.11 3.13 -67.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718560055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.043 kcal (2) G-P(sol) polarization free energy of solvation -71.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds