Wall clock time and date at job start Mon Mar 30 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.47838 * 111.00069 * 290.84251 * 13 12 11 15 15 C 1.54910 * 104.79789 * 213.63354 * 14 13 12 16 16 C 1.55139 * 101.64865 * 37.07408 * 15 14 13 17 17 H 1.09007 * 110.85780 * 82.79717 * 16 15 14 18 18 C 1.50698 * 110.70810 * 205.96403 * 16 15 14 19 19 O 1.20764 * 120.00215 * 233.60297 * 18 16 15 20 20 C 1.47447 * 110.99748 * 170.00145 * 13 12 11 21 21 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 23 23 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 24 24 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 25 25 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 26 26 H 1.09002 * 109.47302 * 300.00137 * 11 10 9 27 27 H 1.08998 * 109.46899 * 59.99999 * 11 10 9 28 28 H 1.09002 * 109.46997 * 300.00324 * 12 11 10 29 29 H 1.09000 * 109.46625 * 59.99899 * 12 11 10 30 30 H 1.08999 * 110.37894 * 332.47005 * 14 13 12 31 31 H 1.09000 * 110.37452 * 94.81099 * 14 13 12 32 32 H 1.08994 * 110.99102 * 278.98228 * 15 14 13 33 33 H 1.08996 * 111.02022 * 155.17252 * 15 14 13 34 34 H 1.08004 * 120.00167 * 53.59450 * 18 16 15 35 35 H 1.09003 * 109.88809 * 242.66423 * 20 13 12 36 36 H 1.09002 * 109.88789 * 3.69027 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 6 2.4746 -6.1500 0.0011 13 7 1.7401 -7.4222 0.0022 14 6 1.0514 -7.6352 1.2929 15 6 1.0940 -9.1676 1.5159 16 6 2.4941 -9.5273 0.9528 17 1 3.2695 -9.3501 1.6981 18 6 2.5275 -10.9584 0.4819 19 8 3.3794 -11.7095 0.8924 20 6 2.6497 -8.5576 -0.2376 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5563 0.8920 23 1 0.6242 -2.5575 -0.8880 24 1 2.8714 -3.6046 -0.8890 25 1 2.8727 -3.6039 0.8909 26 1 0.8541 -5.0447 0.8922 27 1 0.8534 -5.0449 -0.8877 28 1 3.1006 -6.0921 -0.8894 29 1 3.1020 -6.0922 0.8906 30 1 1.5803 -7.1201 2.0949 31 1 0.0196 -7.2889 1.2342 32 1 0.3062 -9.6663 0.9515 33 1 1.0256 -9.4104 2.5763 34 1 1.7893 -11.3126 -0.2225 35 1 2.3770 -9.0618 -1.1647 36 1 3.6785 -8.2023 -0.2976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718967541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:45 Heat of formation + Delta-G solvation = -58.687940 kcal Electronic energy + Delta-G solvation = -14989.072653 eV Core-core repulsion = 12472.270025 eV Total energy + Delta-G solvation = -2516.802628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04585 -38.52939 -35.19887 -33.21229 -31.34804 -29.53424 -27.91847 -24.58790 -23.38494 -22.29283 -21.01201 -20.58503 -20.19228 -16.84334 -16.59120 -16.38050 -15.52692 -15.07688 -14.62667 -14.12819 -13.71923 -13.60008 -13.51036 -13.08272 -12.61208 -12.35329 -11.99804 -11.65361 -11.58514 -11.18605 -11.01210 -10.86185 -10.63149 -10.52109 -10.10751 -9.98936 -9.75897 -9.61342 -8.49047 -8.43198 -8.28826 -6.32918 -4.01400 1.56015 3.44853 3.48664 3.64397 3.73026 3.95421 4.27081 4.41333 4.47679 4.57408 5.02659 5.06865 5.18830 5.25718 5.36018 5.43548 5.44745 5.51926 5.63215 5.78810 5.79717 5.80759 6.02715 6.11969 6.39217 6.67336 6.82542 6.84771 6.92745 6.98132 7.09523 7.46506 7.59977 8.27050 8.50790 8.92876 9.71080 11.07926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.081513 B = 0.003734 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.421126 B = 7496.462730 C = 7670.464835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.048 0.952 9 C 0.008 3.992 10 C -0.103 4.103 11 C -0.113 4.113 12 C 0.051 3.949 13 N -0.528 5.528 14 C 0.043 3.957 15 C -0.115 4.115 16 C -0.184 4.184 17 H 0.096 0.904 18 C 0.359 3.641 19 O -0.464 6.464 20 C 0.056 3.944 21 H 0.269 0.731 22 H 0.005 0.995 23 H 0.007 0.993 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -19.032 1.129 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.077 4.077 13 N -0.252 5.252 14 C -0.085 4.085 15 C -0.153 4.153 16 C -0.204 4.204 17 H 0.115 0.885 18 C 0.214 3.786 19 O -0.334 6.334 20 C -0.072 4.072 21 H 0.079 0.921 22 H 0.023 0.977 23 H 0.025 0.975 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.588 -17.759 0.953 17.972 hybrid contribution 0.780 -1.556 0.621 1.848 sum 3.368 -19.315 1.574 19.670 Atomic orbital electron populations 1.70750 1.06884 1.30613 1.46939 1.25864 0.96595 1.02752 0.93882 0.83516 0.74647 0.75130 0.76728 1.21467 1.21540 1.21009 1.22122 0.94286 0.92203 1.55416 0.93406 1.19213 0.94654 0.93154 0.95850 1.21474 0.98838 0.93518 1.00284 1.21640 0.97867 0.93555 1.02016 1.22467 0.95900 0.88745 1.00583 1.63658 1.27756 1.01878 1.31888 1.23099 1.00605 0.94490 0.90303 1.22693 0.94691 0.96574 1.01391 1.23432 1.00574 0.96070 1.00348 0.88533 1.25997 0.84214 0.88314 0.80069 1.90410 1.34937 1.57898 1.50180 1.22721 0.96593 0.91008 0.96902 0.92078 0.97657 0.97510 0.93284 0.93552 0.92686 0.91683 0.90887 0.94823 0.93069 0.89467 0.89832 0.90293 0.88378 0.90034 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.58 13.65 55.43 0.76 -27.82 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.60 -17.58 9.11 -34.44 -0.31 -17.89 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.22 4.28 -27.89 -0.12 0.10 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.11 -1.90 5.26 -26.73 -0.14 -2.04 16 12 C 0.05 0.69 4.57 -3.82 -0.02 0.68 16 13 N -0.53 -6.23 5.16 -231.25 -1.19 -7.42 16 14 C 0.04 0.44 5.78 -2.30 -0.01 0.43 16 15 C -0.12 -0.89 6.51 -24.59 -0.16 -1.05 16 16 C -0.18 -1.52 3.41 -89.95 -0.31 -1.83 16 17 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 18 C 0.36 2.85 10.36 36.00 0.37 3.23 16 19 O -0.46 -5.60 17.91 6.00 0.11 -5.49 16 20 C 0.06 0.53 6.45 -2.83 -0.02 0.51 16 21 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 22 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 23 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.92 7.49 -51.93 -0.39 0.53 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 29 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.05 0.57 7.62 -51.93 -0.40 0.17 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.47 8.06 -52.48 -0.42 0.05 16 35 H 0.08 0.67 7.81 -51.93 -0.41 0.26 16 36 H 0.06 0.59 7.55 -51.93 -0.39 0.20 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -32.91 296.59 -8.01 -40.92 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -6.11 Total: -5.43 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -0.95 Total: -19.87 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.44 Total: -35.24 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.91 -8.01 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718967541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.772 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds