Wall clock time and date at job start Mon Mar 30 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.47838 * 111.00069 * 290.84251 * 13 12 11 15 15 C 1.54910 * 104.79789 * 213.63354 * 14 13 12 16 16 C 1.55139 * 101.64865 * 37.07408 * 15 14 13 17 17 H 1.09007 * 110.85780 * 82.79717 * 16 15 14 18 18 C 1.50698 * 110.70810 * 205.96403 * 16 15 14 19 19 O 1.20764 * 120.00215 * 233.60297 * 18 16 15 20 20 C 1.47447 * 110.99748 * 170.00145 * 13 12 11 21 21 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 23 23 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 24 24 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 25 25 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 26 26 H 1.09002 * 109.47302 * 300.00137 * 11 10 9 27 27 H 1.08998 * 109.46899 * 59.99999 * 11 10 9 28 28 H 1.09002 * 109.46997 * 300.00324 * 12 11 10 29 29 H 1.09000 * 109.46625 * 59.99899 * 12 11 10 30 30 H 1.08999 * 110.37894 * 332.47005 * 14 13 12 31 31 H 1.09000 * 110.37452 * 94.81099 * 14 13 12 32 32 H 1.08994 * 110.99102 * 278.98228 * 15 14 13 33 33 H 1.08996 * 111.02022 * 155.17252 * 15 14 13 34 34 H 1.08004 * 120.00167 * 53.59450 * 18 16 15 35 35 H 1.09003 * 109.88809 * 242.66423 * 20 13 12 36 36 H 1.09002 * 109.88789 * 3.69027 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9870 0.0020 12 6 2.4746 -6.1500 0.0011 13 7 1.7401 -7.4222 0.0022 14 6 1.0514 -7.6352 1.2929 15 6 1.0940 -9.1676 1.5159 16 6 2.4941 -9.5273 0.9528 17 1 3.2695 -9.3501 1.6981 18 6 2.5275 -10.9584 0.4819 19 8 3.3794 -11.7095 0.8924 20 6 2.6497 -8.5576 -0.2376 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5563 0.8920 23 1 0.6242 -2.5575 -0.8880 24 1 2.8714 -3.6046 -0.8890 25 1 2.8727 -3.6039 0.8909 26 1 0.8541 -5.0447 0.8922 27 1 0.8534 -5.0449 -0.8877 28 1 3.1006 -6.0921 -0.8894 29 1 3.1020 -6.0922 0.8906 30 1 1.5803 -7.1201 2.0949 31 1 0.0196 -7.2889 1.2342 32 1 0.3062 -9.6663 0.9515 33 1 1.0256 -9.4104 2.5763 34 1 1.7893 -11.3126 -0.2225 35 1 2.3770 -9.0618 -1.1647 36 1 3.6785 -8.2023 -0.2976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718967541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:45 Heat of formation + Delta-G solvation = -80.342520 kcal Electronic energy + Delta-G solvation = -14990.011666 eV Core-core repulsion = 12472.270025 eV Total energy + Delta-G solvation = -2517.741641 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81000 -39.37679 -36.87512 -34.93745 -32.77251 -30.27704 -29.51584 -26.27611 -24.38021 -23.66715 -22.23959 -21.53918 -21.37657 -18.88407 -17.48483 -17.16673 -16.51754 -16.33832 -15.65528 -15.49541 -15.14212 -14.88772 -14.84803 -14.36959 -13.83705 -13.69775 -13.41313 -12.80837 -12.62720 -12.46087 -12.31939 -12.22755 -12.03289 -11.94130 -11.79314 -11.52114 -11.43045 -10.70210 -10.59148 -10.54985 -9.35192 -8.70169 -6.40518 0.93180 1.51629 1.61297 1.79124 2.56207 2.89892 3.14824 3.29424 3.56697 3.67784 3.86516 4.01338 4.12515 4.31552 4.38654 4.42977 4.46911 4.58933 4.69564 4.76792 4.78694 4.87246 4.93437 4.99106 5.06896 5.11482 5.16606 5.20478 5.47705 5.55965 5.96264 6.01362 6.02079 6.18570 6.37669 6.57574 7.42109 8.70769 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.081513 B = 0.003734 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.421126 B = 7496.462730 C = 7670.464835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.092 4.092 11 C -0.101 4.101 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.036 3.964 15 C -0.105 4.105 16 C -0.180 4.180 17 H 0.083 0.917 18 C 0.373 3.627 19 O -0.508 6.508 20 C 0.055 3.945 21 H 0.255 0.745 22 H -0.014 1.014 23 H -0.013 1.013 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -19.925 0.810 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.942 3.058 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.660 4.660 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.130 4.130 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.261 5.261 14 C -0.092 4.092 15 C -0.143 4.143 16 C -0.200 4.200 17 H 0.101 0.899 18 C 0.231 3.769 19 O -0.381 6.381 20 C -0.073 4.073 21 H 0.065 0.935 22 H 0.005 0.995 23 H 0.006 0.994 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.159 0.841 35 H 0.118 0.882 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.247 -18.680 0.628 18.971 hybrid contribution 0.527 -1.289 0.716 1.566 sum 3.774 -19.970 1.343 20.367 Atomic orbital electron populations 1.70890 1.07959 1.29869 1.48915 1.27521 0.96663 1.07038 0.92694 0.82890 0.74145 0.70855 0.77894 1.19644 1.19365 1.20707 1.22584 0.94729 0.93675 1.55005 0.93170 1.19187 0.95186 0.94659 0.93929 1.21307 0.97777 0.93552 1.00397 1.21443 0.97998 0.92909 1.01518 1.22247 0.94934 0.88715 1.00874 1.63626 1.28099 1.01683 1.32677 1.23159 0.99987 0.96589 0.89444 1.22671 0.94795 0.94409 1.02422 1.23372 1.00568 0.96452 0.99651 0.89891 1.26447 0.83737 0.87340 0.79372 1.90417 1.36960 1.58788 1.51946 1.22781 0.96010 0.90424 0.98084 0.93536 0.99539 0.99425 0.93031 0.93429 0.92979 0.92392 0.90390 0.94795 0.94109 0.89918 0.87854 0.89287 0.84138 0.88207 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.57 13.65 21.45 0.29 -59.28 16 2 C -0.04 -2.51 5.46 84.65 0.46 -2.04 16 3 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.62 -36.62 9.11 25.60 0.23 -36.39 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.01 0.40 4.28 29.85 0.13 0.53 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.68 16 11 C -0.10 -3.36 5.26 30.59 0.16 -3.20 16 12 C 0.06 1.59 4.57 86.30 0.39 1.98 16 13 N -0.54 -11.77 5.16 -885.54 -4.57 -16.34 16 14 C 0.04 0.69 5.78 86.78 0.50 1.20 16 15 C -0.10 -1.35 6.51 31.98 0.21 -1.14 16 16 C -0.18 -2.58 3.41 -10.36 -0.04 -2.62 16 17 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 18 C 0.37 4.91 10.36 71.24 0.74 5.65 16 19 O -0.51 -11.50 17.91 -1.46 -0.03 -11.52 16 20 C 0.05 0.90 6.45 86.65 0.56 1.46 16 21 H 0.26 16.40 7.22 -92.71 -0.67 15.73 16 22 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 23 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 24 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.75 7.49 -2.39 -0.02 1.74 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 1.97 8.03 -2.39 -0.02 1.95 16 29 H 0.03 0.89 7.85 -2.39 -0.02 0.87 16 30 H 0.04 0.87 7.62 -2.39 -0.02 0.85 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 0.96 8.04 -2.39 -0.02 0.94 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.14 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.10 1.31 7.81 -2.39 -0.02 1.29 16 36 H 0.06 1.02 7.55 -2.39 -0.02 1.00 16 Total: -1.00 -71.54 296.59 2.37 -69.17 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.12 Total: 3.11 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.51 Total: -38.26 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -4.28 Total: -75.62 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.03 Total: -11.52 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -71.54 2.37 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718967541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.176 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds