Wall clock time and date at job start Mon Mar 30 2020 03:20:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86806 * 120.00058 * 2 1
4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1
5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1
7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2
11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7
12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9
13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10
14 14 H 1.09000 * 115.55725 * 9.26048 * 13 12 11
15 15 C 1.53129 * 117.51016 * 223.46170 * 13 12 11
16 16 C 1.52460 * 117.51137 * 155.00009 * 13 12 11
17 17 C 1.53250 * 128.58563 * 349.84374 * 16 13 12
18 18 C 1.53888 * 86.88231 * 194.88803 * 17 16 13
19 19 O 1.42904 * 113.59252 * 270.39076 * 18 17 16
20 20 C 1.53254 * 128.58283 * 225.04607 * 16 13 12
21 21 H 0.97004 * 119.99990 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2
23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2
24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7
25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7
26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9
27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9
28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10
29 29 H 1.08998 * 117.51034 * 0.02562 * 15 13 12
30 30 H 1.09002 * 117.51035 * 145.10393 * 15 13 12
31 31 H 1.08991 * 113.65306 * 309.38896 * 17 16 13
32 32 H 1.09002 * 113.64168 * 80.39551 * 17 16 13
33 33 H 1.09007 * 113.65978 * 139.58611 * 18 17 16
34 34 H 0.96696 * 114.00488 * 277.66919 * 19 18 17
35 35 H 1.09007 * 113.64520 * 279.60765 * 20 16 13
36 36 H 1.09003 * 113.64825 * 50.52274 * 20 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9870 0.0012
12 7 2.4348 -6.1036 0.0018
13 6 1.7345 -7.3950 0.0018
14 1 0.6572 -7.3457 -0.1569
15 6 2.2635 -8.4865 0.9365
16 6 2.4763 -8.5984 -0.5691
17 6 3.7955 -8.6264 -1.3485
18 6 3.4285 -10.0650 -1.7534
19 8 3.9017 -11.0552 -0.8381
20 6 1.9571 -9.6731 -1.5304
21 1 -0.4850 0.8401 -0.0004
22 1 0.6246 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8903
24 1 2.8718 -3.6043 0.8905
25 1 2.8718 -3.6043 -0.8894
26 1 0.8533 -5.0451 -0.8886
27 1 0.8538 -5.0445 0.8913
28 1 3.0696 -6.0362 0.7832
29 1 3.1307 -8.2460 1.5514
30 1 1.5340 -9.1554 1.3930
31 1 3.8232 -7.9300 -2.1864
32 1 4.6795 -8.5630 -0.7139
33 1 3.6646 -10.3011 -2.7911
34 1 4.8258 -11.3059 -0.9729
35 1 1.3674 -10.4488 -1.0418
36 1 1.4717 -9.2680 -2.4183
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724924103.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:24
Heat of formation + Delta-G solvation = -14.364089 kcal
Electronic energy + Delta-G solvation = -14928.331650 eV
Core-core repulsion = 12413.451048 eV
Total energy + Delta-G solvation = -2514.880602 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.88623 -36.86235 -35.06383 -33.37191 -32.03335 -29.92749 -26.03137 -25.72515
-22.68739 -22.51490 -21.30104 -20.03062 -18.68841 -17.14123 -16.32827 -15.61306
-15.37189 -14.96945 -14.61299 -14.38185 -13.66259 -13.27237 -12.97116 -12.56836
-12.28436 -12.02962 -11.82527 -11.46356 -11.32350 -10.91804 -10.75385 -10.55954
-10.54948 -10.28178 -9.87850 -9.84559 -9.61675 -9.29189 -9.03019 -8.32250
-7.91381 -5.97540 -3.99719 3.35210 3.39180 3.41985 3.72743 3.95080
4.12815 4.48166 4.56708 4.62155 4.70883 4.94770 5.07563 5.33232
5.38148 5.55227 5.63025 5.72707 5.75260 5.83134 5.86523 5.96849
6.03145 6.07439 6.24429 6.33537 6.73882 6.80782 7.15102 7.39010
7.45330 7.63361 7.70541 7.85851 8.02875 8.46103 9.07295 9.64108
11.13916
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.067632 B = 0.003807 C = 0.003734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 413.907022 B = 7353.738327 C = 7497.176183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.056 3.944
3 Si 0.893 3.107
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.520 4.520
8 H 0.054 0.946
9 C 0.022 3.978
10 C -0.107 4.107
11 C 0.060 3.940
12 N -0.657 5.657
13 C 0.042 3.958
14 H 0.106 0.894
15 C -0.170 4.170
16 C -0.143 4.143
17 C -0.117 4.117
18 C 0.078 3.922
19 O -0.551 6.551
20 C -0.094 4.094
21 H 0.261 0.739
22 H 0.016 0.984
23 H 0.014 0.986
24 H 0.045 0.955
25 H 0.055 0.945
26 H 0.068 0.932
27 H 0.026 0.974
28 H 0.339 0.661
29 H 0.094 0.906
30 H 0.092 0.908
31 H 0.095 0.905
32 H 0.068 0.932
33 H 0.066 0.934
34 H 0.378 0.622
35 H 0.072 0.928
36 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.792 -19.609 -1.978 20.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.721 3.279
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.558 4.558
8 H 0.073 0.927
9 C -0.015 4.015
10 C -0.145 4.145
11 C -0.068 4.068
12 N -0.286 5.286
13 C -0.069 4.069
14 H 0.124 0.876
15 C -0.209 4.209
16 C -0.144 4.144
17 C -0.155 4.155
18 C 0.019 3.981
19 O -0.356 6.356
20 C -0.131 4.131
21 H 0.070 0.930
22 H 0.034 0.966
23 H 0.032 0.968
24 H 0.063 0.937
25 H 0.074 0.926
26 H 0.086 0.914
27 H 0.045 0.955
28 H 0.158 0.842
29 H 0.112 0.888
30 H 0.111 0.889
31 H 0.113 0.887
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.224 0.776
35 H 0.091 0.909
36 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 5.103 -19.392 -2.437 20.200
hybrid contribution 0.660 0.899 0.758 1.349
sum 5.763 -18.493 -1.679 19.442
Atomic orbital electron populations
1.69957 1.06067 1.26667 1.50950 1.25030 0.94853 0.99257 0.95378
0.86649 0.79569 0.83111 0.78621 1.20220 1.21313 1.20264 1.21224
0.93024 0.91085 1.50468 0.92727 1.19060 0.94006 0.91327 0.97135
1.21630 0.99219 0.92993 1.00698 1.22182 0.94100 0.90492 1.00003
1.60234 1.19525 1.00040 1.48829 1.22412 0.96386 0.85812 1.02289
0.87582 1.23297 1.03123 1.02999 0.91464 1.22275 0.98531 0.98982
0.94644 1.22991 0.96106 0.96410 0.99967 1.22672 0.96174 0.87784
0.91488 1.86468 1.31917 1.59067 1.58167 1.22572 0.94837 0.96640
0.99075 0.92980 0.96568 0.96780 0.93670 0.92573 0.91386 0.95547
0.84223 0.88769 0.88924 0.88693 0.91350 0.91609 0.77560 0.90885
0.88444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16
8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16
9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16
10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16
11 C 0.06 1.07 5.54 -3.82 -0.02 1.05 16
12 N -0.66 -9.98 6.76 -106.95 -0.72 -10.70 16
13 C 0.04 0.56 6.31 -67.92 -0.43 0.13 16
14 H 0.11 1.41 7.90 -51.93 -0.41 1.00 16
15 C -0.17 -2.02 10.23 -26.94 -0.28 -2.30 16
16 C -0.14 -1.70 2.95 -154.80 -0.46 -2.16 16
17 C -0.12 -1.27 7.91 -26.14 -0.21 -1.48 16
18 C 0.08 0.74 5.27 -25.81 -0.14 0.61 16
19 O -0.55 -5.41 13.59 -35.23 -0.48 -5.89 16
20 C -0.09 -0.97 7.93 -26.14 -0.21 -1.18 16
21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16
24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16
28 H 0.34 4.90 8.52 -39.29 -0.33 4.56 16
29 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16
30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16
31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.38 2.02 9.12 45.56 0.42 2.43 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 302.98 15.07 4.57 4.57
Total: -1.00 -31.63 302.98 -8.71 -40.35
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -5.36 Total: 2.47 kcal
Atomic # 6 Polarization: -18.66 SS G_CDS: -2.43 Total: -21.09 kcal
Atomic # 7 Polarization: -37.33 SS G_CDS: 0.01 Total: -37.32 kcal
Atomic # 8 Polarization: -5.41 SS G_CDS: -0.48 Total: -5.89 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -31.63 -8.71 -40.35 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724924103.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.983 kcal
(2) G-P(sol) polarization free energy of solvation -31.635 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds