Wall clock time and date at job start Mon Mar 30 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09000 * 115.55725 * 9.26048 * 13 12 11 15 15 C 1.53129 * 117.51016 * 223.46170 * 13 12 11 16 16 C 1.52460 * 117.51137 * 155.00009 * 13 12 11 17 17 C 1.53250 * 128.58563 * 349.84374 * 16 13 12 18 18 C 1.53888 * 86.88231 * 194.88803 * 17 16 13 19 19 O 1.42904 * 113.59252 * 270.39076 * 18 17 16 20 20 C 1.53254 * 128.58283 * 225.04607 * 16 13 12 21 21 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 29 29 H 1.08998 * 117.51034 * 0.02562 * 15 13 12 30 30 H 1.09002 * 117.51035 * 145.10393 * 15 13 12 31 31 H 1.08991 * 113.65306 * 309.38896 * 17 16 13 32 32 H 1.09002 * 113.64168 * 80.39551 * 17 16 13 33 33 H 1.09007 * 113.65978 * 139.58611 * 18 17 16 34 34 H 0.96696 * 114.00488 * 277.66919 * 19 18 17 35 35 H 1.09007 * 113.64520 * 279.60765 * 20 16 13 36 36 H 1.09003 * 113.64825 * 50.52274 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 1 0.6572 -7.3457 -0.1569 15 6 2.2635 -8.4865 0.9365 16 6 2.4763 -8.5984 -0.5691 17 6 3.7955 -8.6264 -1.3485 18 6 3.4285 -10.0650 -1.7534 19 8 3.9017 -11.0552 -0.8381 20 6 1.9571 -9.6731 -1.5304 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8905 25 1 2.8718 -3.6043 -0.8894 26 1 0.8533 -5.0451 -0.8886 27 1 0.8538 -5.0445 0.8913 28 1 3.0696 -6.0362 0.7832 29 1 3.1307 -8.2460 1.5514 30 1 1.5340 -9.1554 1.3930 31 1 3.8232 -7.9300 -2.1864 32 1 4.6795 -8.5630 -0.7139 33 1 3.6646 -10.3011 -2.7911 34 1 4.8258 -11.3059 -0.9729 35 1 1.3674 -10.4488 -1.0418 36 1 1.4717 -9.2680 -2.4183 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724924103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:24 Heat of formation + Delta-G solvation = -14.364089 kcal Electronic energy + Delta-G solvation = -14928.331650 eV Core-core repulsion = 12413.451048 eV Total energy + Delta-G solvation = -2514.880602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88623 -36.86235 -35.06383 -33.37191 -32.03335 -29.92749 -26.03137 -25.72515 -22.68739 -22.51490 -21.30104 -20.03062 -18.68841 -17.14123 -16.32827 -15.61306 -15.37189 -14.96945 -14.61299 -14.38185 -13.66259 -13.27237 -12.97116 -12.56836 -12.28436 -12.02962 -11.82527 -11.46356 -11.32350 -10.91804 -10.75385 -10.55954 -10.54948 -10.28178 -9.87850 -9.84559 -9.61675 -9.29189 -9.03019 -8.32250 -7.91381 -5.97540 -3.99719 3.35210 3.39180 3.41985 3.72743 3.95080 4.12815 4.48166 4.56708 4.62155 4.70883 4.94770 5.07563 5.33232 5.38148 5.55227 5.63025 5.72707 5.75260 5.83134 5.86523 5.96849 6.03145 6.07439 6.24429 6.33537 6.73882 6.80782 7.15102 7.39010 7.45330 7.63361 7.70541 7.85851 8.02875 8.46103 9.07295 9.64108 11.13916 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.067632 B = 0.003807 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.907022 B = 7353.738327 C = 7497.176183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.657 5.657 13 C 0.042 3.958 14 H 0.106 0.894 15 C -0.170 4.170 16 C -0.143 4.143 17 C -0.117 4.117 18 C 0.078 3.922 19 O -0.551 6.551 20 C -0.094 4.094 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.339 0.661 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.378 0.622 35 H 0.072 0.928 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -19.609 -1.978 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.286 5.286 13 C -0.069 4.069 14 H 0.124 0.876 15 C -0.209 4.209 16 C -0.144 4.144 17 C -0.155 4.155 18 C 0.019 3.981 19 O -0.356 6.356 20 C -0.131 4.131 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.158 0.842 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.103 -19.392 -2.437 20.200 hybrid contribution 0.660 0.899 0.758 1.349 sum 5.763 -18.493 -1.679 19.442 Atomic orbital electron populations 1.69957 1.06067 1.26667 1.50950 1.25030 0.94853 0.99257 0.95378 0.86649 0.79569 0.83111 0.78621 1.20220 1.21313 1.20264 1.21224 0.93024 0.91085 1.50468 0.92727 1.19060 0.94006 0.91327 0.97135 1.21630 0.99219 0.92993 1.00698 1.22182 0.94100 0.90492 1.00003 1.60234 1.19525 1.00040 1.48829 1.22412 0.96386 0.85812 1.02289 0.87582 1.23297 1.03123 1.02999 0.91464 1.22275 0.98531 0.98982 0.94644 1.22991 0.96106 0.96410 0.99967 1.22672 0.96174 0.87784 0.91488 1.86468 1.31917 1.59067 1.58167 1.22572 0.94837 0.96640 0.99075 0.92980 0.96568 0.96780 0.93670 0.92573 0.91386 0.95547 0.84223 0.88769 0.88924 0.88693 0.91350 0.91609 0.77560 0.90885 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.07 5.54 -3.82 -0.02 1.05 16 12 N -0.66 -9.98 6.76 -106.95 -0.72 -10.70 16 13 C 0.04 0.56 6.31 -67.92 -0.43 0.13 16 14 H 0.11 1.41 7.90 -51.93 -0.41 1.00 16 15 C -0.17 -2.02 10.23 -26.94 -0.28 -2.30 16 16 C -0.14 -1.70 2.95 -154.80 -0.46 -2.16 16 17 C -0.12 -1.27 7.91 -26.14 -0.21 -1.48 16 18 C 0.08 0.74 5.27 -25.81 -0.14 0.61 16 19 O -0.55 -5.41 13.59 -35.23 -0.48 -5.89 16 20 C -0.09 -0.97 7.93 -26.14 -0.21 -1.18 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.34 4.90 8.52 -39.29 -0.33 4.56 16 29 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.38 2.02 9.12 45.56 0.42 2.43 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -31.63 302.98 -8.71 -40.35 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.36 Total: 2.47 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.43 Total: -21.09 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.01 Total: -37.32 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.48 Total: -5.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.63 -8.71 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724924103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.983 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds