Wall clock time and date at job start Mon Mar 30 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09000 * 115.55725 * 9.26048 * 13 12 11 15 15 C 1.53129 * 117.51016 * 223.46170 * 13 12 11 16 16 C 1.52460 * 117.51137 * 155.00009 * 13 12 11 17 17 C 1.53250 * 128.58563 * 349.84374 * 16 13 12 18 18 C 1.53888 * 86.88231 * 194.88803 * 17 16 13 19 19 O 1.42904 * 113.59252 * 270.39076 * 18 17 16 20 20 C 1.53254 * 128.58283 * 225.04607 * 16 13 12 21 21 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 29 29 H 1.08998 * 117.51034 * 0.02562 * 15 13 12 30 30 H 1.09002 * 117.51035 * 145.10393 * 15 13 12 31 31 H 1.08991 * 113.65306 * 309.38896 * 17 16 13 32 32 H 1.09002 * 113.64168 * 80.39551 * 17 16 13 33 33 H 1.09007 * 113.65978 * 139.58611 * 18 17 16 34 34 H 0.96696 * 114.00488 * 277.66919 * 19 18 17 35 35 H 1.09007 * 113.64520 * 279.60765 * 20 16 13 36 36 H 1.09003 * 113.64825 * 50.52274 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 1 0.6572 -7.3457 -0.1569 15 6 2.2635 -8.4865 0.9365 16 6 2.4763 -8.5984 -0.5691 17 6 3.7955 -8.6264 -1.3485 18 6 3.4285 -10.0650 -1.7534 19 8 3.9017 -11.0552 -0.8381 20 6 1.9571 -9.6731 -1.5304 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8905 25 1 2.8718 -3.6043 -0.8894 26 1 0.8533 -5.0451 -0.8886 27 1 0.8538 -5.0445 0.8913 28 1 3.0696 -6.0362 0.7832 29 1 3.1307 -8.2460 1.5514 30 1 1.5340 -9.1554 1.3930 31 1 3.8232 -7.9300 -2.1864 32 1 4.6795 -8.5630 -0.7139 33 1 3.6646 -10.3011 -2.7911 34 1 4.8258 -11.3059 -0.9729 35 1 1.3674 -10.4488 -1.0418 36 1 1.4717 -9.2680 -2.4183 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724924103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:24 Heat of formation + Delta-G solvation = -36.914310 kcal Electronic energy + Delta-G solvation = -14929.309501 eV Core-core repulsion = 12413.451048 eV Total energy + Delta-G solvation = -2515.858453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75633 -37.93570 -36.41925 -35.04383 -33.49484 -31.50201 -27.80376 -26.67258 -24.36155 -23.49782 -22.43270 -21.72526 -19.52118 -18.49986 -17.92811 -16.72354 -16.64359 -16.40157 -16.17637 -15.40587 -15.11034 -14.41223 -14.08443 -13.98326 -13.70292 -13.58257 -13.15872 -12.85450 -12.73295 -12.48502 -12.34684 -12.22633 -11.76102 -11.52504 -11.42246 -11.21822 -11.11599 -10.67293 -10.62435 -10.55250 -9.08363 -8.20348 -6.31751 1.40066 1.43545 1.51493 2.40988 2.77611 3.04123 3.12635 3.28182 3.68264 3.75184 3.83604 4.02137 4.17555 4.25662 4.40313 4.53818 4.56648 4.70867 4.83406 4.83818 4.90883 4.93927 5.00258 5.13780 5.16616 5.23076 5.27864 5.41146 5.51347 5.73998 5.85052 6.08998 6.26720 6.43101 6.85001 6.95050 7.37542 8.91483 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.067632 B = 0.003807 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.907022 B = 7353.738327 C = 7497.176183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.655 5.655 13 C 0.023 3.977 14 H 0.103 0.897 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.118 4.118 18 C 0.088 3.912 19 O -0.568 6.568 20 C -0.097 4.097 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.009 1.009 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.343 0.657 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 -20.255 -2.217 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.285 5.285 13 C -0.088 4.088 14 H 0.121 0.879 15 C -0.201 4.201 16 C -0.147 4.147 17 C -0.156 4.156 18 C 0.029 3.971 19 O -0.376 6.376 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.009 0.991 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.162 0.838 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.517 -20.069 -2.675 21.269 hybrid contribution 0.214 1.045 0.844 1.360 sum 6.732 -19.024 -1.831 20.263 Atomic orbital electron populations 1.70092 1.07843 1.27882 1.51639 1.26011 0.95804 1.03464 0.94664 0.85476 0.78260 0.77932 0.79236 1.19129 1.20759 1.19106 1.21679 0.93570 0.92419 1.50662 0.92197 1.18966 0.94417 0.93082 0.94775 1.21373 0.98044 0.92853 1.00739 1.21864 0.93924 0.89934 0.99658 1.60170 1.19013 1.00102 1.49211 1.22424 0.96382 0.85315 1.04639 0.87897 1.23312 1.03150 1.01963 0.91712 1.22499 0.99225 0.98033 0.94940 1.23014 0.95391 0.97581 0.99632 1.22608 0.95118 0.86865 0.92531 1.86421 1.33736 1.58915 1.58562 1.22661 0.95739 0.96022 0.98965 0.92730 0.99008 0.99073 0.93107 0.92846 0.91967 0.95771 0.83763 0.88499 0.88118 0.89084 0.91534 0.89324 0.75377 0.91088 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.91 5.41 30.59 0.17 -3.74 16 11 C 0.08 2.67 5.54 86.30 0.48 3.15 16 12 N -0.66 -19.43 6.76 -492.27 -3.33 -22.76 16 13 C 0.02 0.59 6.31 44.78 0.28 0.88 16 14 H 0.10 2.70 7.90 -2.39 -0.02 2.68 16 15 C -0.16 -3.64 10.23 30.46 0.31 -3.33 16 16 C -0.15 -3.25 2.95 -52.37 -0.15 -3.40 16 17 C -0.12 -2.36 7.91 30.98 0.25 -2.12 16 18 C 0.09 1.46 5.27 31.19 0.16 1.62 16 19 O -0.57 -9.78 13.59 -148.98 -2.03 -11.80 16 20 C -0.10 -1.82 7.93 30.98 0.25 -1.58 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.34 9.58 8.52 -89.69 -0.76 8.82 16 29 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.05 302.98 -0.84 -67.89 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.38 Total: 15.56 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.58 Total: -38.20 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.04 Total: -80.27 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -2.03 Total: -11.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.05 -0.84 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724924103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.979 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds