Wall clock time and date at job start Mon Mar 30 2020 03:20:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86806 * 120.00058 * 2 1
4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1
5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1
7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1
10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2
11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7
12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9
13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10
14 14 H 1.09000 * 115.55725 * 9.26048 * 13 12 11
15 15 C 1.53129 * 117.51016 * 223.46170 * 13 12 11
16 16 C 1.52460 * 117.51137 * 155.00009 * 13 12 11
17 17 C 1.53250 * 128.58563 * 349.84374 * 16 13 12
18 18 C 1.53888 * 86.88231 * 194.88803 * 17 16 13
19 19 O 1.42904 * 113.59252 * 270.39076 * 18 17 16
20 20 C 1.53254 * 128.58283 * 225.04607 * 16 13 12
21 21 H 0.97004 * 119.99990 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.47558 * 59.99970 * 9 7 2
23 23 H 1.08998 * 109.47216 * 299.99633 * 9 7 2
24 24 H 1.09001 * 109.46514 * 59.99676 * 10 9 7
25 25 H 1.08998 * 109.46924 * 300.00156 * 10 9 7
26 26 H 1.09001 * 109.47393 * 60.00433 * 11 10 9
27 27 H 1.08998 * 109.47408 * 300.00078 * 11 10 9
28 28 H 1.00901 * 110.99869 * 56.04956 * 12 11 10
29 29 H 1.08998 * 117.51034 * 0.02562 * 15 13 12
30 30 H 1.09002 * 117.51035 * 145.10393 * 15 13 12
31 31 H 1.08991 * 113.65306 * 309.38896 * 17 16 13
32 32 H 1.09002 * 113.64168 * 80.39551 * 17 16 13
33 33 H 1.09007 * 113.65978 * 139.58611 * 18 17 16
34 34 H 0.96696 * 114.00488 * 277.66919 * 19 18 17
35 35 H 1.09007 * 113.64520 * 279.60765 * 20 16 13
36 36 H 1.09003 * 113.64825 * 50.52274 * 20 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9870 0.0012
12 7 2.4348 -6.1036 0.0018
13 6 1.7345 -7.3950 0.0018
14 1 0.6572 -7.3457 -0.1569
15 6 2.2635 -8.4865 0.9365
16 6 2.4763 -8.5984 -0.5691
17 6 3.7955 -8.6264 -1.3485
18 6 3.4285 -10.0650 -1.7534
19 8 3.9017 -11.0552 -0.8381
20 6 1.9571 -9.6731 -1.5304
21 1 -0.4850 0.8401 -0.0004
22 1 0.6246 -2.5571 -0.8897
23 1 0.6240 -2.5567 0.8903
24 1 2.8718 -3.6043 0.8905
25 1 2.8718 -3.6043 -0.8894
26 1 0.8533 -5.0451 -0.8886
27 1 0.8538 -5.0445 0.8913
28 1 3.0696 -6.0362 0.7832
29 1 3.1307 -8.2460 1.5514
30 1 1.5340 -9.1554 1.3930
31 1 3.8232 -7.9300 -2.1864
32 1 4.6795 -8.5630 -0.7139
33 1 3.6646 -10.3011 -2.7911
34 1 4.8258 -11.3059 -0.9729
35 1 1.3674 -10.4488 -1.0418
36 1 1.4717 -9.2680 -2.4183
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724924103.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:24
Heat of formation + Delta-G solvation = -36.914310 kcal
Electronic energy + Delta-G solvation = -14929.309501 eV
Core-core repulsion = 12413.451048 eV
Total energy + Delta-G solvation = -2515.858453 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.75633 -37.93570 -36.41925 -35.04383 -33.49484 -31.50201 -27.80376 -26.67258
-24.36155 -23.49782 -22.43270 -21.72526 -19.52118 -18.49986 -17.92811 -16.72354
-16.64359 -16.40157 -16.17637 -15.40587 -15.11034 -14.41223 -14.08443 -13.98326
-13.70292 -13.58257 -13.15872 -12.85450 -12.73295 -12.48502 -12.34684 -12.22633
-11.76102 -11.52504 -11.42246 -11.21822 -11.11599 -10.67293 -10.62435 -10.55250
-9.08363 -8.20348 -6.31751 1.40066 1.43545 1.51493 2.40988 2.77611
3.04123 3.12635 3.28182 3.68264 3.75184 3.83604 4.02137 4.17555
4.25662 4.40313 4.53818 4.56648 4.70867 4.83406 4.83818 4.90883
4.93927 5.00258 5.13780 5.16616 5.23076 5.27864 5.41146 5.51347
5.73998 5.85052 6.08998 6.26720 6.43101 6.85001 6.95050 7.37542
8.91483
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.067632 B = 0.003807 C = 0.003734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 413.907022 B = 7353.738327 C = 7497.176183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.002 4.002
3 Si 0.967 3.033
4 H -0.266 1.266
5 H -0.282 1.282
6 H -0.266 1.266
7 C -0.545 4.545
8 H 0.060 0.940
9 C 0.025 3.975
10 C -0.092 4.092
11 C 0.075 3.925
12 N -0.655 5.655
13 C 0.023 3.977
14 H 0.103 0.897
15 C -0.163 4.163
16 C -0.146 4.146
17 C -0.118 4.118
18 C 0.088 3.912
19 O -0.568 6.568
20 C -0.097 4.097
21 H 0.264 0.736
22 H -0.008 1.008
23 H -0.009 1.009
24 H 0.050 0.950
25 H 0.053 0.947
26 H 0.062 0.938
27 H 0.024 0.976
28 H 0.343 0.657
29 H 0.097 0.903
30 H 0.100 0.900
31 H 0.091 0.909
32 H 0.066 0.934
33 H 0.089 0.911
34 H 0.396 0.604
35 H 0.070 0.930
36 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.180 -20.255 -2.217 21.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.199 4.199
3 Si 0.791 3.209
4 H -0.191 1.191
5 H -0.208 1.208
6 H -0.191 1.191
7 C -0.583 4.583
8 H 0.078 0.922
9 C -0.012 4.012
10 C -0.130 4.130
11 C -0.054 4.054
12 N -0.285 5.285
13 C -0.088 4.088
14 H 0.121 0.879
15 C -0.201 4.201
16 C -0.147 4.147
17 C -0.156 4.156
18 C 0.029 3.971
19 O -0.376 6.376
20 C -0.134 4.134
21 H 0.073 0.927
22 H 0.010 0.990
23 H 0.009 0.991
24 H 0.069 0.931
25 H 0.072 0.928
26 H 0.080 0.920
27 H 0.042 0.958
28 H 0.162 0.838
29 H 0.115 0.885
30 H 0.119 0.881
31 H 0.109 0.891
32 H 0.085 0.915
33 H 0.107 0.893
34 H 0.246 0.754
35 H 0.089 0.911
36 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 6.517 -20.069 -2.675 21.269
hybrid contribution 0.214 1.045 0.844 1.360
sum 6.732 -19.024 -1.831 20.263
Atomic orbital electron populations
1.70092 1.07843 1.27882 1.51639 1.26011 0.95804 1.03464 0.94664
0.85476 0.78260 0.77932 0.79236 1.19129 1.20759 1.19106 1.21679
0.93570 0.92419 1.50662 0.92197 1.18966 0.94417 0.93082 0.94775
1.21373 0.98044 0.92853 1.00739 1.21864 0.93924 0.89934 0.99658
1.60170 1.19013 1.00102 1.49211 1.22424 0.96382 0.85315 1.04639
0.87897 1.23312 1.03150 1.01963 0.91712 1.22499 0.99225 0.98033
0.94940 1.23014 0.95391 0.97581 0.99632 1.22608 0.95118 0.86865
0.92531 1.86421 1.33736 1.58915 1.58562 1.22661 0.95739 0.96022
0.98965 0.92730 0.99008 0.99073 0.93107 0.92846 0.91967 0.95771
0.83763 0.88499 0.88118 0.89084 0.91534 0.89324 0.75377 0.91088
0.87507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16
2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16
3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16
4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
7 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16
8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
9 C 0.03 1.37 4.97 29.85 0.15 1.52 16
10 C -0.09 -3.91 5.41 30.59 0.17 -3.74 16
11 C 0.08 2.67 5.54 86.30 0.48 3.15 16
12 N -0.66 -19.43 6.76 -492.27 -3.33 -22.76 16
13 C 0.02 0.59 6.31 44.78 0.28 0.88 16
14 H 0.10 2.70 7.90 -2.39 -0.02 2.68 16
15 C -0.16 -3.64 10.23 30.46 0.31 -3.33 16
16 C -0.15 -3.25 2.95 -52.37 -0.15 -3.40 16
17 C -0.12 -2.36 7.91 30.98 0.25 -2.12 16
18 C 0.09 1.46 5.27 31.19 0.16 1.62 16
19 O -0.57 -9.78 13.59 -148.98 -2.03 -11.80 16
20 C -0.10 -1.82 7.93 30.98 0.25 -1.58 16
21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16
23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16
26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.34 9.58 8.52 -89.69 -0.76 8.82 16
29 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16
30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16
31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
33 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16
34 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16
35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16
36 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16
Total: -1.00 -67.05 302.98 -0.84 -67.89
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: -0.38 Total: 15.56 kcal
Atomic # 6 Polarization: -40.78 SS G_CDS: 2.58 Total: -38.20 kcal
Atomic # 7 Polarization: -77.22 SS G_CDS: -3.04 Total: -80.27 kcal
Atomic # 8 Polarization: -9.78 SS G_CDS: -2.03 Total: -11.80 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -67.05 -0.84 -67.89 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724924103.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.979 kcal
(2) G-P(sol) polarization free energy of solvation -67.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds