Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48497 * 109.46856 * 90.00292 * 3 2 1 5 5 H 1.48497 * 109.47078 * 210.00435 * 3 2 1 6 6 H 1.48505 * 109.46904 * 330.00475 * 3 2 1 7 7 C 1.38810 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00334 * 324.07530 * 7 2 1 9 9 N 1.36944 * 119.99736 * 144.06777 * 7 2 1 10 10 C 1.46918 * 120.58770 * 331.82497 * 9 7 2 11 11 C 1.52817 * 108.97793 * 233.92286 * 10 9 7 12 12 C 1.52727 * 109.40172 * 306.13996 * 11 10 9 13 13 C 1.54002 * 109.73213 * 299.29053 * 12 11 10 14 14 C 1.54954 * 104.12150 * 264.23660 * 13 12 11 15 15 C 1.54913 * 102.78154 * 322.27861 * 14 13 12 16 16 C 1.53598 * 109.98061 * 181.98877 * 12 11 10 17 17 H 1.09003 * 110.04910 * 359.85500 * 16 12 11 18 18 O 1.42895 * 110.05106 * 238.37319 * 16 12 11 19 19 C 1.52714 * 110.41655 * 60.39830 * 12 11 10 20 20 C 1.46918 * 120.57999 * 152.11116 * 9 7 2 21 21 H 0.97000 * 120.00174 * 174.95313 * 1 2 3 22 22 H 1.08996 * 109.59520 * 353.75012 * 10 9 7 23 23 H 1.09005 * 109.58849 * 114.18858 * 10 9 7 24 24 H 1.09000 * 109.56174 * 186.10216 * 11 10 9 25 25 H 1.08999 * 109.35568 * 66.05628 * 11 10 9 26 26 H 1.08998 * 110.50250 * 22.89983 * 13 12 11 27 27 H 1.09002 * 110.49822 * 145.58147 * 13 12 11 28 28 H 1.09002 * 110.74720 * 80.60282 * 14 13 12 29 29 H 1.09004 * 110.75128 * 203.95486 * 14 13 12 30 30 H 1.08996 * 110.48582 * 156.47634 * 15 14 13 31 31 H 1.09002 * 110.48375 * 278.97840 * 15 14 13 32 32 H 0.96697 * 114.00250 * 179.97438 * 18 16 12 33 33 H 1.09003 * 109.49118 * 179.52638 * 19 12 11 34 34 H 1.09006 * 109.48856 * 59.45119 * 19 12 11 35 35 H 1.09005 * 109.58673 * 245.82160 * 20 9 7 36 36 H 1.08999 * 109.59297 * 6.11145 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.6244 -2.0488 0.5478 9 7 3.1842 -1.3146 -0.6966 10 6 3.4297 -0.4890 -1.8868 11 6 3.7984 -1.4006 -3.0565 12 6 4.9649 -2.2993 -2.6513 13 6 6.1873 -1.4343 -2.2919 14 6 7.0217 -1.3982 -3.5971 15 6 6.8461 -2.8323 -4.1560 16 6 5.3790 -3.1872 -3.8343 17 1 4.7463 -2.9791 -4.6972 18 8 5.2764 -4.5656 -3.4718 19 6 4.5780 -3.1680 -1.4563 20 6 4.2178 -2.2675 -0.2698 21 1 -0.4850 -0.8368 -0.0739 22 1 2.5294 0.0737 -2.1334 23 1 4.2515 0.1998 -1.6906 24 1 4.0876 -0.7941 -3.9148 25 1 2.9386 -2.0169 -3.3192 26 1 5.8741 -0.4288 -2.0110 27 1 6.7583 -1.8963 -1.4865 28 1 6.6196 -0.6609 -4.2921 29 1 8.0701 -1.1940 -3.3797 30 1 7.0145 -2.8454 -5.2328 31 1 7.5260 -3.5223 -3.6561 32 1 5.5244 -5.1776 -4.1782 33 1 5.4173 -3.8085 -1.1854 34 1 3.7186 -3.7853 -1.7185 35 1 5.1036 -1.7233 0.0580 36 1 3.8378 -2.8755 0.5512 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885693158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -38.810296 kcal Electronic energy + Delta-G solvation = -16836.316684 eV Core-core repulsion = 14320.376015 eV Total energy + Delta-G solvation = -2515.940669 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83364 -36.44553 -34.62391 -32.41241 -30.36597 -30.20666 -27.56531 -25.51032 -22.88993 -22.64228 -21.00990 -20.22043 -18.07151 -17.01340 -16.87667 -15.56465 -14.79113 -14.46056 -14.07131 -13.74339 -13.43877 -13.21020 -13.09757 -12.64974 -12.04446 -11.72563 -11.49032 -11.32517 -11.16151 -10.83397 -10.51220 -10.45944 -10.37689 -10.02222 -9.94948 -9.61543 -9.53745 -9.37517 -9.12048 -8.18911 -6.86672 -6.28074 -3.15444 3.55900 3.61708 3.76346 4.37733 4.68669 4.72383 4.76301 5.08253 5.09169 5.39355 5.47101 5.51722 5.58170 5.68602 5.76876 5.81578 5.90008 6.07152 6.12531 6.14228 6.26700 6.32204 6.39762 6.49097 6.58813 6.70934 6.80169 6.86385 6.91024 6.95906 7.22142 7.82213 8.17194 8.54979 9.12797 9.75750 10.35660 11.11844 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.009173 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.303276 B = 3051.669242 C = 3335.327142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 1.015 2.985 4 H -0.299 1.299 5 H -0.269 1.269 6 H -0.295 1.295 7 C -0.357 4.357 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.126 4.126 12 C -0.044 4.044 13 C -0.117 4.117 14 C -0.123 4.123 15 C -0.156 4.156 16 C 0.105 3.895 17 H 0.054 0.946 18 O -0.557 6.557 19 C -0.103 4.103 20 C 0.142 3.858 21 H 0.266 0.734 22 H 0.063 0.937 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.366 0.634 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.795 -4.711 -9.124 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.202 4.202 3 Si 0.844 3.156 4 H -0.227 1.227 5 H -0.195 1.195 6 H -0.222 1.222 7 C -0.485 4.485 8 H 0.080 0.920 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.165 4.165 12 C -0.044 4.044 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.194 4.194 16 C 0.046 3.954 17 H 0.072 0.928 18 O -0.361 6.361 19 C -0.142 4.142 20 C 0.016 3.984 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.212 0.788 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.365 -2.823 -8.453 16.064 hybrid contribution 0.379 -1.880 -0.643 2.023 sum 13.744 -4.703 -9.096 17.139 Atomic orbital electron populations 1.70881 1.07013 1.29686 1.46369 1.26118 0.95929 1.00728 0.97439 0.84651 0.76628 0.77420 0.76859 1.22692 1.19545 1.22167 1.20067 0.98090 0.97873 1.32474 0.92019 1.44284 1.16668 1.44461 1.26812 1.21319 0.98690 0.92283 0.85822 1.22060 0.96887 0.98609 0.98932 1.20804 0.95137 0.94109 0.94349 1.22545 0.95432 1.00784 0.96706 1.22433 0.99817 0.95994 0.97789 1.23112 0.97819 0.98170 1.00260 1.22604 0.94155 0.81664 0.96981 0.92809 1.86659 1.90909 1.16038 1.42497 1.21678 1.00404 0.97083 0.95040 1.21042 0.91358 0.91528 0.94487 0.92428 0.91872 0.95118 0.93067 0.92125 0.90587 0.91625 0.91564 0.91845 0.92118 0.90957 0.78840 0.92727 0.92185 0.96463 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.70 55.49 0.76 -27.45 16 2 C 0.00 0.04 4.82 -17.43 -0.08 -0.04 16 3 Si 1.01 25.74 27.00 -169.99 -4.59 21.15 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.27 -6.25 4.73 56.52 0.27 -5.98 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 7 C -0.36 -10.32 9.70 -15.06 -0.15 -10.47 16 8 H 0.06 1.92 8.06 -52.49 -0.42 1.49 16 9 N -0.60 -14.87 2.71 -172.53 -0.47 -15.33 16 10 C 0.14 3.23 4.00 -3.91 -0.02 3.21 16 11 C -0.13 -2.34 4.63 -26.97 -0.12 -2.47 16 12 C -0.04 -0.73 0.63 -153.96 -0.10 -0.83 16 13 C -0.12 -1.77 4.70 -25.18 -0.12 -1.89 16 14 C -0.12 -1.48 6.91 -24.69 -0.17 -1.65 16 15 C -0.16 -1.78 6.56 -25.02 -0.16 -1.95 16 16 C 0.10 1.46 3.89 -25.72 -0.10 1.36 16 17 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 18 O -0.56 -7.70 11.43 -35.23 -0.40 -8.10 16 19 C -0.10 -1.94 3.76 -26.75 -0.10 -2.04 16 20 C 0.14 3.04 6.19 -3.69 -0.02 3.02 16 21 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 22 H 0.06 1.53 5.80 -51.93 -0.30 1.23 16 23 H 0.03 0.67 4.78 -51.93 -0.25 0.42 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.24 5.83 -51.93 -0.30 0.94 16 27 H 0.07 0.98 7.60 -51.93 -0.39 0.59 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.37 3.31 9.11 45.56 0.42 3.72 16 33 H 0.05 0.96 7.78 -51.93 -0.40 0.56 16 34 H 0.06 1.25 7.94 -51.93 -0.41 0.84 16 35 H 0.02 0.36 7.29 -51.93 -0.38 -0.02 16 36 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -31.69 266.87 -6.90 -38.59 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.08 Total: 0.87 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.14 Total: -13.75 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.29 Total: -42.79 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.40 Total: -8.10 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.59 Total: 21.15 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.69 -6.90 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885693158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.219 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds