Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48497 * 109.46856 * 90.00292 * 3 2 1 5 5 H 1.48497 * 109.47078 * 210.00435 * 3 2 1 6 6 H 1.48505 * 109.46904 * 330.00475 * 3 2 1 7 7 C 1.38810 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00334 * 324.07530 * 7 2 1 9 9 N 1.36944 * 119.99736 * 144.06777 * 7 2 1 10 10 C 1.46918 * 120.58770 * 331.82497 * 9 7 2 11 11 C 1.52817 * 108.97793 * 233.92286 * 10 9 7 12 12 C 1.52727 * 109.40172 * 306.13996 * 11 10 9 13 13 C 1.54002 * 109.73213 * 299.29053 * 12 11 10 14 14 C 1.54954 * 104.12150 * 264.23660 * 13 12 11 15 15 C 1.54913 * 102.78154 * 322.27861 * 14 13 12 16 16 C 1.53598 * 109.98061 * 181.98877 * 12 11 10 17 17 H 1.09003 * 110.04910 * 359.85500 * 16 12 11 18 18 O 1.42895 * 110.05106 * 238.37319 * 16 12 11 19 19 C 1.52714 * 110.41655 * 60.39830 * 12 11 10 20 20 C 1.46918 * 120.57999 * 152.11116 * 9 7 2 21 21 H 0.97000 * 120.00174 * 174.95313 * 1 2 3 22 22 H 1.08996 * 109.59520 * 353.75012 * 10 9 7 23 23 H 1.09005 * 109.58849 * 114.18858 * 10 9 7 24 24 H 1.09000 * 109.56174 * 186.10216 * 11 10 9 25 25 H 1.08999 * 109.35568 * 66.05628 * 11 10 9 26 26 H 1.08998 * 110.50250 * 22.89983 * 13 12 11 27 27 H 1.09002 * 110.49822 * 145.58147 * 13 12 11 28 28 H 1.09002 * 110.74720 * 80.60282 * 14 13 12 29 29 H 1.09004 * 110.75128 * 203.95486 * 14 13 12 30 30 H 1.08996 * 110.48582 * 156.47634 * 15 14 13 31 31 H 1.09002 * 110.48375 * 278.97840 * 15 14 13 32 32 H 0.96697 * 114.00250 * 179.97438 * 18 16 12 33 33 H 1.09003 * 109.49118 * 179.52638 * 19 12 11 34 34 H 1.09006 * 109.48856 * 59.45119 * 19 12 11 35 35 H 1.09005 * 109.58673 * 245.82160 * 20 9 7 36 36 H 1.08999 * 109.59297 * 6.11145 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.6244 -2.0488 0.5478 9 7 3.1842 -1.3146 -0.6966 10 6 3.4297 -0.4890 -1.8868 11 6 3.7984 -1.4006 -3.0565 12 6 4.9649 -2.2993 -2.6513 13 6 6.1873 -1.4343 -2.2919 14 6 7.0217 -1.3982 -3.5971 15 6 6.8461 -2.8323 -4.1560 16 6 5.3790 -3.1872 -3.8343 17 1 4.7463 -2.9791 -4.6972 18 8 5.2764 -4.5656 -3.4718 19 6 4.5780 -3.1680 -1.4563 20 6 4.2178 -2.2675 -0.2698 21 1 -0.4850 -0.8368 -0.0739 22 1 2.5294 0.0737 -2.1334 23 1 4.2515 0.1998 -1.6906 24 1 4.0876 -0.7941 -3.9148 25 1 2.9386 -2.0169 -3.3192 26 1 5.8741 -0.4288 -2.0110 27 1 6.7583 -1.8963 -1.4865 28 1 6.6196 -0.6609 -4.2921 29 1 8.0701 -1.1940 -3.3797 30 1 7.0145 -2.8454 -5.2328 31 1 7.5260 -3.5223 -3.6561 32 1 5.5244 -5.1776 -4.1782 33 1 5.4173 -3.8085 -1.1854 34 1 3.7186 -3.7853 -1.7185 35 1 5.1036 -1.7233 0.0580 36 1 3.8378 -2.8755 0.5512 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885693158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -61.409016 kcal Electronic energy + Delta-G solvation = -16837.296638 eV Core-core repulsion = 14320.376015 eV Total energy + Delta-G solvation = -2516.920623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13012 -37.94576 -35.91173 -34.30799 -32.02828 -31.92718 -28.62464 -27.19385 -24.60734 -24.26250 -22.51711 -21.43809 -19.91445 -18.61576 -18.06265 -17.02776 -16.30523 -16.04254 -15.56309 -15.20449 -15.05916 -14.87447 -14.61258 -13.95768 -13.78711 -13.17328 -12.96031 -12.79132 -12.62132 -12.39936 -12.09715 -11.88617 -11.70487 -11.56945 -11.38353 -11.20480 -11.11090 -10.92000 -10.64277 -10.39799 -8.98626 -8.58355 -5.43199 1.50742 1.56229 1.76434 2.59607 2.94830 3.36202 3.50766 3.61332 3.71232 3.96752 4.22069 4.34162 4.39223 4.42537 4.52954 4.59359 4.63727 4.76040 4.79732 4.90703 4.99570 5.00315 5.05484 5.09913 5.16584 5.27722 5.33048 5.39081 5.45453 5.51934 5.63689 5.83268 6.26853 6.92158 7.01914 7.65166 8.16148 8.77199 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.009173 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.303276 B = 3051.669242 C = 3335.327142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 1.066 2.934 4 H -0.296 1.296 5 H -0.234 1.234 6 H -0.296 1.296 7 C -0.353 4.353 8 H 0.021 0.979 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.118 4.118 12 C -0.049 4.049 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.144 4.144 16 C 0.107 3.893 17 H 0.058 0.942 18 O -0.578 6.578 19 C -0.089 4.089 20 C 0.139 3.861 21 H 0.250 0.750 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.388 0.612 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.142 -4.088 -10.986 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.248 4.248 3 Si 0.890 3.110 4 H -0.224 1.224 5 H -0.158 1.158 6 H -0.223 1.223 7 C -0.482 4.482 8 H 0.039 0.961 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.157 4.157 12 C -0.049 4.049 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.182 4.182 16 C 0.048 3.952 17 H 0.076 0.924 18 O -0.385 6.385 19 C -0.128 4.128 20 C 0.014 3.986 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.756 -2.236 -10.341 19.816 hybrid contribution -0.701 -2.216 -0.031 2.324 sum 16.054 -4.451 -10.372 19.625 Atomic orbital electron populations 1.71006 1.08158 1.28765 1.49681 1.27304 0.95856 1.04292 0.97301 0.83993 0.76867 0.72866 0.77239 1.22384 1.15788 1.22281 1.19917 0.99502 0.96596 1.32200 0.96144 1.44372 1.16260 1.45515 1.27664 1.21412 0.98113 0.92857 0.86118 1.21937 0.97030 0.98338 0.98376 1.20840 0.95161 0.94377 0.94545 1.22509 0.94977 0.99409 0.98627 1.22437 1.00348 0.96619 0.96006 1.23037 0.95594 0.97665 1.01902 1.22507 0.96104 0.81286 0.95317 0.92420 1.86593 1.91288 1.16493 1.44148 1.21493 0.99634 0.96658 0.95047 1.21157 0.90877 0.91264 0.95297 0.94075 0.94278 0.93366 0.89821 0.94578 0.91816 0.91549 0.90757 0.89953 0.89611 0.90527 0.76317 0.91205 0.95155 0.94536 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.78 13.70 21.65 0.30 -60.48 16 2 C -0.05 -3.02 4.82 84.86 0.41 -2.61 16 3 Si 1.07 52.25 27.00 68.60 1.85 54.10 16 4 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.23 -9.98 4.73 99.48 0.47 -9.51 16 6 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.35 -21.16 9.70 84.03 0.82 -20.35 16 8 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 9 N -0.61 -30.66 2.71 -699.75 -1.90 -32.56 16 10 C 0.14 6.06 4.00 86.24 0.35 6.40 16 11 C -0.12 -4.18 4.63 30.44 0.14 -4.04 16 12 C -0.05 -1.51 0.63 -51.83 -0.03 -1.55 16 13 C -0.12 -3.12 4.70 31.60 0.15 -2.97 16 14 C -0.12 -2.23 6.91 31.92 0.22 -2.01 16 15 C -0.14 -2.59 6.56 31.70 0.21 -2.38 16 16 C 0.11 2.60 3.89 31.25 0.12 2.72 16 17 H 0.06 1.36 7.66 -2.39 -0.02 1.35 16 18 O -0.58 -14.45 11.43 -148.98 -1.70 -16.15 16 19 C -0.09 -3.29 3.76 30.58 0.11 -3.17 16 20 C 0.14 5.95 6.19 86.38 0.54 6.49 16 21 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 22 H 0.04 1.87 5.80 -2.39 -0.01 1.86 16 23 H 0.05 1.95 4.78 -2.38 -0.01 1.94 16 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.84 5.83 -2.39 -0.01 1.83 16 27 H 0.07 1.74 7.60 -2.39 -0.02 1.73 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.39 5.81 9.11 -74.06 -0.67 5.13 16 33 H 0.07 2.35 7.78 -2.39 -0.02 2.33 16 34 H 0.03 1.27 7.94 -2.38 -0.02 1.25 16 35 H 0.04 1.44 7.29 -2.38 -0.02 1.42 16 36 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 Total: -1.00 -70.89 266.87 1.69 -69.20 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.11 Total: 9.36 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.03 Total: -23.47 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -1.60 Total: -93.04 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.70 Total: -16.15 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 1.85 Total: 54.10 kcal Total: -70.89 1.69 -69.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885693158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds