Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99297 * 2 1 4 4 H 1.48503 * 109.46660 * 90.00372 * 3 2 1 5 5 H 1.48499 * 109.46978 * 210.00094 * 3 2 1 6 6 H 1.48492 * 109.47637 * 330.00541 * 3 2 1 7 7 C 1.37873 * 120.00466 * 180.27993 * 2 1 3 8 8 H 1.08004 * 119.99738 * 359.72069 * 7 2 1 9 9 C 1.50694 * 120.00306 * 179.72370 * 7 2 1 10 10 C 1.52996 * 109.47483 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47312 * 183.40530 * 10 9 7 12 12 C 1.48861 * 111.00072 * 295.10801 * 11 10 9 13 13 C 1.55241 * 102.64037 * 199.49477 * 12 11 10 14 14 C 1.54937 * 102.23046 * 38.69456 * 13 12 11 15 15 H 1.08998 * 106.94397 * 91.07649 * 14 13 12 16 16 C 1.49658 * 110.58997 * 207.69734 * 14 13 12 17 17 O 1.40922 * 117.15324 * 122.81215 * 16 14 13 18 18 C 1.42789 * 115.46856 * 32.91372 * 17 16 14 19 19 C 1.52943 * 107.26080 * 295.12773 * 18 17 16 20 20 C 1.48370 * 110.99945 * 178.58598 * 11 10 9 21 21 H 1.09004 * 108.10252 * 29.66485 * 20 11 10 22 22 H 0.96991 * 120.00325 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46996 * 300.00306 * 9 7 2 24 24 H 1.09005 * 109.46910 * 59.99357 * 9 7 2 25 25 H 1.09002 * 109.47029 * 303.40907 * 10 9 7 26 26 H 1.09004 * 109.46945 * 63.40672 * 10 9 7 27 27 H 1.08994 * 110.77535 * 317.78569 * 12 11 10 28 28 H 1.08996 * 110.77086 * 81.20688 * 12 11 10 29 29 H 1.08997 * 110.84781 * 156.88192 * 13 12 11 30 30 H 1.08999 * 110.84712 * 280.30434 * 13 12 11 31 31 H 1.09002 * 107.91045 * 244.74929 * 16 14 13 32 32 H 1.08997 * 107.91195 * 0.86956 * 16 14 13 33 33 H 1.09000 * 109.89854 * 54.56001 * 18 17 16 34 34 H 1.08998 * 109.90094 * 175.61638 * 18 17 16 35 35 H 1.09003 * 109.32069 * 183.15414 * 19 18 17 36 36 H 1.09000 * 109.31831 * 302.59838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5466 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0047 -1.1939 -0.0058 8 1 1.4647 -2.1293 -0.0058 9 6 3.5116 -1.1939 -0.0121 10 6 4.0217 -2.6363 -0.0172 11 7 5.4888 -2.6372 0.0590 12 6 6.0865 -2.0204 -1.1569 13 6 7.5416 -2.5607 -1.1316 14 6 7.3423 -4.0180 -0.6449 15 1 7.2205 -4.6361 -1.5343 16 6 8.5615 -4.5043 0.0741 17 8 8.3903 -4.9554 1.3981 18 6 7.1381 -5.5829 1.6759 19 6 6.0510 -4.5202 1.5092 20 6 6.0187 -4.0226 0.0904 21 1 5.3267 -4.6625 -0.4572 22 1 -0.4850 0.8399 0.0004 23 1 3.8712 -0.6778 -0.9023 24 1 3.8786 -0.6821 0.8776 25 1 3.6130 -3.1692 0.8413 26 1 3.7053 -3.1303 -0.9359 27 1 5.5660 -2.3533 -2.0549 28 1 6.0764 -0.9330 -1.0836 29 1 7.9800 -2.5413 -2.1293 30 1 8.1535 -1.9941 -0.4297 31 1 8.9889 -5.3221 -0.5061 32 1 9.2886 -3.6924 0.0878 33 1 6.9689 -6.3999 0.9745 34 1 7.1325 -5.9638 2.6972 35 1 5.0835 -4.9502 1.7685 36 1 6.2603 -3.6827 2.1746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885695830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = -45.458334 kcal Electronic energy + Delta-G solvation = -16102.291324 eV Core-core repulsion = 13586.062375 eV Total energy + Delta-G solvation = -2516.228949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29646 -37.41348 -33.89212 -32.68490 -31.93213 -29.64467 -28.40552 -25.02465 -23.74589 -23.07928 -21.66198 -19.91702 -18.59179 -16.91069 -16.51372 -16.21384 -15.73630 -14.92670 -14.56918 -14.09195 -14.03729 -13.38074 -12.98335 -12.85667 -12.50827 -12.18107 -11.84356 -11.51823 -11.33842 -11.13189 -10.87679 -10.80791 -10.68106 -10.22319 -9.98168 -9.80720 -9.73722 -9.37821 -9.20183 -8.53659 -8.01336 -6.04949 -4.03240 3.32408 3.39157 3.43699 3.85493 4.22800 4.45776 4.48105 4.66836 4.77283 5.01747 5.14335 5.29617 5.34214 5.37888 5.40230 5.51425 5.57326 5.70403 5.82356 5.91068 6.01393 6.01554 6.08437 6.22074 6.24108 6.30614 6.45352 6.74894 7.13826 7.20943 7.30194 7.45648 7.59823 7.83573 8.52242 8.98739 9.57550 11.08438 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.006390 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.027794 B = 4380.703396 C = 4690.470062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.062 3.938 11 N -0.512 5.512 12 C 0.034 3.966 13 C -0.117 4.117 14 C -0.124 4.124 15 H 0.068 0.932 16 C 0.083 3.917 17 O -0.379 6.379 18 C 0.066 3.934 19 C -0.144 4.144 20 C 0.078 3.922 21 H 0.039 0.961 22 H 0.263 0.737 23 H 0.014 0.986 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.336 -8.850 -0.947 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.215 1.215 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.065 4.065 11 N -0.237 5.237 12 C -0.094 4.094 13 C -0.155 4.155 14 C -0.143 4.143 15 H 0.087 0.913 16 C 0.006 3.994 17 O -0.298 6.298 18 C -0.011 4.011 19 C -0.182 4.182 20 C -0.031 4.031 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.427 -8.421 -0.359 18.463 hybrid contribution -0.353 0.419 -1.075 1.207 sum 16.074 -8.003 -1.434 18.013 Atomic orbital electron populations 1.69913 1.06311 1.26925 1.51156 1.24994 0.94715 0.99179 0.94462 0.86745 0.80268 0.83457 0.78613 1.20202 1.19024 1.21470 1.21078 0.89410 0.94496 1.51020 0.91173 1.19535 0.96536 0.91558 0.96757 1.22310 0.84094 1.00566 0.99537 1.65290 1.08812 1.12849 1.36704 1.23278 0.93339 1.00673 0.92149 1.22843 0.97614 0.94164 1.00883 1.21326 0.95296 0.98533 0.99147 0.91348 1.21372 0.96070 0.98516 0.83477 1.87480 1.36341 1.77388 1.28603 1.22540 0.83409 0.93945 1.01223 1.21614 0.99428 0.99922 0.97225 1.21102 0.94146 0.91791 0.96059 0.94239 0.92720 0.96766 0.96081 0.91368 0.95584 0.93713 0.89734 0.91193 0.90448 0.94296 0.90008 0.93412 0.88521 0.90967 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.15 3.93 -27.89 -0.11 -0.26 16 10 C 0.06 1.28 4.60 -3.82 -0.02 1.27 16 11 N -0.51 -9.05 4.90 -224.84 -1.10 -10.15 16 12 C 0.03 0.53 5.65 -1.55 -0.01 0.52 16 13 C -0.12 -1.45 6.38 -24.52 -0.16 -1.60 16 14 C -0.12 -1.52 2.81 -92.06 -0.26 -1.78 16 15 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 16 C 0.08 0.95 6.62 35.50 0.23 1.18 16 17 O -0.38 -4.95 10.61 -34.71 -0.37 -5.32 16 18 C 0.07 0.75 6.87 37.13 0.26 1.00 16 19 C -0.14 -1.95 5.64 -28.07 -0.16 -2.11 16 20 C 0.08 1.14 2.45 -69.01 -0.17 0.97 16 21 H 0.04 0.59 7.67 -51.93 -0.40 0.20 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.01 0.35 6.28 -51.93 -0.33 0.02 16 24 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 25 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 26 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 27 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 28 H 0.08 1.40 7.75 -51.93 -0.40 1.00 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 31 H 0.04 0.39 8.13 -51.93 -0.42 -0.04 16 32 H 0.08 0.87 7.22 -51.93 -0.37 0.49 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -31.17 279.04 -8.06 -39.23 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -6.08 Total: -3.73 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.82 Total: -14.31 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.33 Total: -37.51 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.37 Total: -5.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.17 -8.06 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885695830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.232 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds