Wall clock time and date at job start Mon Mar 30 2020 03:23:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99297 * 2 1
4 4 H 1.48503 * 109.46660 * 90.00372 * 3 2 1
5 5 H 1.48499 * 109.46978 * 210.00094 * 3 2 1
6 6 H 1.48492 * 109.47637 * 330.00541 * 3 2 1
7 7 C 1.37873 * 120.00466 * 180.27993 * 2 1 3
8 8 H 1.08004 * 119.99738 * 359.72069 * 7 2 1
9 9 C 1.50694 * 120.00306 * 179.72370 * 7 2 1
10 10 C 1.52996 * 109.47483 * 179.97438 * 9 7 2
11 11 N 1.46905 * 109.47312 * 183.40530 * 10 9 7
12 12 C 1.48861 * 111.00072 * 295.10801 * 11 10 9
13 13 C 1.55241 * 102.64037 * 199.49477 * 12 11 10
14 14 C 1.54937 * 102.23046 * 38.69456 * 13 12 11
15 15 H 1.08998 * 106.94397 * 91.07649 * 14 13 12
16 16 C 1.49658 * 110.58997 * 207.69734 * 14 13 12
17 17 O 1.40922 * 117.15324 * 122.81215 * 16 14 13
18 18 C 1.42789 * 115.46856 * 32.91372 * 17 16 14
19 19 C 1.52943 * 107.26080 * 295.12773 * 18 17 16
20 20 C 1.48370 * 110.99945 * 178.58598 * 11 10 9
21 21 H 1.09004 * 108.10252 * 29.66485 * 20 11 10
22 22 H 0.96991 * 120.00325 * 359.97438 * 1 2 3
23 23 H 1.08998 * 109.46996 * 300.00306 * 9 7 2
24 24 H 1.09005 * 109.46910 * 59.99357 * 9 7 2
25 25 H 1.09002 * 109.47029 * 303.40907 * 10 9 7
26 26 H 1.09004 * 109.46945 * 63.40672 * 10 9 7
27 27 H 1.08994 * 110.77535 * 317.78569 * 12 11 10
28 28 H 1.08996 * 110.77086 * 81.20688 * 12 11 10
29 29 H 1.08997 * 110.84781 * 156.88192 * 13 12 11
30 30 H 1.08999 * 110.84712 * 280.30434 * 13 12 11
31 31 H 1.09002 * 107.91045 * 244.74929 * 16 14 13
32 32 H 1.08997 * 107.91195 * 0.86956 * 16 14 13
33 33 H 1.09000 * 109.89854 * 54.56001 * 18 17 16
34 34 H 1.08998 * 109.90094 * 175.61638 * 18 17 16
35 35 H 1.09003 * 109.32069 * 183.15414 * 19 18 17
36 36 H 1.09000 * 109.31831 * 302.59838 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0464 1.4001
5 1 3.5466 1.4404 -0.7001
6 1 1.4464 2.6528 -0.6999
7 6 2.0047 -1.1939 -0.0058
8 1 1.4647 -2.1293 -0.0058
9 6 3.5116 -1.1939 -0.0121
10 6 4.0217 -2.6363 -0.0172
11 7 5.4888 -2.6372 0.0590
12 6 6.0865 -2.0204 -1.1569
13 6 7.5416 -2.5607 -1.1316
14 6 7.3423 -4.0180 -0.6449
15 1 7.2205 -4.6361 -1.5343
16 6 8.5615 -4.5043 0.0741
17 8 8.3903 -4.9554 1.3981
18 6 7.1381 -5.5829 1.6759
19 6 6.0510 -4.5202 1.5092
20 6 6.0187 -4.0226 0.0904
21 1 5.3267 -4.6625 -0.4572
22 1 -0.4850 0.8399 0.0004
23 1 3.8712 -0.6778 -0.9023
24 1 3.8786 -0.6821 0.8776
25 1 3.6130 -3.1692 0.8413
26 1 3.7053 -3.1303 -0.9359
27 1 5.5660 -2.3533 -2.0549
28 1 6.0764 -0.9330 -1.0836
29 1 7.9800 -2.5413 -2.1293
30 1 8.1535 -1.9941 -0.4297
31 1 8.9889 -5.3221 -0.5061
32 1 9.2886 -3.6924 0.0878
33 1 6.9689 -6.3999 0.9745
34 1 7.1325 -5.9638 2.6972
35 1 5.0835 -4.9502 1.7685
36 1 6.2603 -3.6827 2.1746
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885695830.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:47
Heat of formation + Delta-G solvation = -45.458334 kcal
Electronic energy + Delta-G solvation = -16102.291324 eV
Core-core repulsion = 13586.062375 eV
Total energy + Delta-G solvation = -2516.228949 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.29646 -37.41348 -33.89212 -32.68490 -31.93213 -29.64467 -28.40552 -25.02465
-23.74589 -23.07928 -21.66198 -19.91702 -18.59179 -16.91069 -16.51372 -16.21384
-15.73630 -14.92670 -14.56918 -14.09195 -14.03729 -13.38074 -12.98335 -12.85667
-12.50827 -12.18107 -11.84356 -11.51823 -11.33842 -11.13189 -10.87679 -10.80791
-10.68106 -10.22319 -9.98168 -9.80720 -9.73722 -9.37821 -9.20183 -8.53659
-8.01336 -6.04949 -4.03240 3.32408 3.39157 3.43699 3.85493 4.22800
4.45776 4.48105 4.66836 4.77283 5.01747 5.14335 5.29617 5.34214
5.37888 5.40230 5.51425 5.57326 5.70403 5.82356 5.91068 6.01393
6.01554 6.08437 6.22074 6.24108 6.30614 6.45352 6.74894 7.13826
7.20943 7.30194 7.45648 7.59823 7.83573 8.52242 8.98739 9.57550
11.08438
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.045739 B = 0.006390 C = 0.005968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 612.027794 B = 4380.703396 C = 4690.470062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.068 3.932
3 Si 0.882 3.118
4 H -0.276 1.276
5 H -0.266 1.266
6 H -0.289 1.289
7 C -0.522 4.522
8 H 0.070 0.930
9 C -0.006 4.006
10 C 0.062 3.938
11 N -0.512 5.512
12 C 0.034 3.966
13 C -0.117 4.117
14 C -0.124 4.124
15 H 0.068 0.932
16 C 0.083 3.917
17 O -0.379 6.379
18 C 0.066 3.934
19 C -0.144 4.144
20 C 0.078 3.922
21 H 0.039 0.961
22 H 0.263 0.737
23 H 0.014 0.986
24 H 0.021 0.979
25 H 0.068 0.932
26 H 0.026 0.974
27 H 0.045 0.955
28 H 0.084 0.916
29 H 0.069 0.931
30 H 0.077 0.923
31 H 0.039 0.961
32 H 0.082 0.918
33 H 0.048 0.952
34 H 0.097 0.903
35 H 0.072 0.928
36 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.336 -8.850 -0.947 18.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.133 4.133
3 Si 0.709 3.291
4 H -0.202 1.202
5 H -0.190 1.190
6 H -0.215 1.215
7 C -0.560 4.560
8 H 0.088 0.912
9 C -0.044 4.044
10 C -0.065 4.065
11 N -0.237 5.237
12 C -0.094 4.094
13 C -0.155 4.155
14 C -0.143 4.143
15 H 0.087 0.913
16 C 0.006 3.994
17 O -0.298 6.298
18 C -0.011 4.011
19 C -0.182 4.182
20 C -0.031 4.031
21 H 0.058 0.942
22 H 0.073 0.927
23 H 0.032 0.968
24 H 0.039 0.961
25 H 0.086 0.914
26 H 0.044 0.956
27 H 0.063 0.937
28 H 0.103 0.897
29 H 0.088 0.912
30 H 0.096 0.904
31 H 0.057 0.943
32 H 0.100 0.900
33 H 0.066 0.934
34 H 0.115 0.885
35 H 0.090 0.910
36 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 16.427 -8.421 -0.359 18.463
hybrid contribution -0.353 0.419 -1.075 1.207
sum 16.074 -8.003 -1.434 18.013
Atomic orbital electron populations
1.69913 1.06311 1.26925 1.51156 1.24994 0.94715 0.99179 0.94462
0.86745 0.80268 0.83457 0.78613 1.20202 1.19024 1.21470 1.21078
0.89410 0.94496 1.51020 0.91173 1.19535 0.96536 0.91558 0.96757
1.22310 0.84094 1.00566 0.99537 1.65290 1.08812 1.12849 1.36704
1.23278 0.93339 1.00673 0.92149 1.22843 0.97614 0.94164 1.00883
1.21326 0.95296 0.98533 0.99147 0.91348 1.21372 0.96070 0.98516
0.83477 1.87480 1.36341 1.77388 1.28603 1.22540 0.83409 0.93945
1.01223 1.21614 0.99428 0.99922 0.97225 1.21102 0.94146 0.91791
0.96059 0.94239 0.92720 0.96766 0.96081 0.91368 0.95584 0.93713
0.89734 0.91193 0.90448 0.94296 0.90008 0.93412 0.88521 0.90967
0.89548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16
2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16
3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16
4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
5 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16
6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16
8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16
9 C -0.01 -0.15 3.93 -27.89 -0.11 -0.26 16
10 C 0.06 1.28 4.60 -3.82 -0.02 1.27 16
11 N -0.51 -9.05 4.90 -224.84 -1.10 -10.15 16
12 C 0.03 0.53 5.65 -1.55 -0.01 0.52 16
13 C -0.12 -1.45 6.38 -24.52 -0.16 -1.60 16
14 C -0.12 -1.52 2.81 -92.06 -0.26 -1.78 16
15 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16
16 C 0.08 0.95 6.62 35.50 0.23 1.18 16
17 O -0.38 -4.95 10.61 -34.71 -0.37 -5.32 16
18 C 0.07 0.75 6.87 37.13 0.26 1.00 16
19 C -0.14 -1.95 5.64 -28.07 -0.16 -2.11 16
20 C 0.08 1.14 2.45 -69.01 -0.17 0.97 16
21 H 0.04 0.59 7.67 -51.93 -0.40 0.20 16
22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
23 H 0.01 0.35 6.28 -51.93 -0.33 0.02 16
24 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16
25 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16
26 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16
27 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16
28 H 0.08 1.40 7.75 -51.93 -0.40 1.00 16
29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
30 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16
31 H 0.04 0.39 8.13 -51.93 -0.42 -0.04 16
32 H 0.08 0.87 7.22 -51.93 -0.37 0.49 16
33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16
LS Contribution 279.04 15.07 4.21 4.21
Total: -1.00 -31.17 279.04 -8.06 -39.23
By element:
Atomic # 1 Polarization: 2.35 SS G_CDS: -6.08 Total: -3.73 kcal
Atomic # 6 Polarization: -13.49 SS G_CDS: -0.82 Total: -14.31 kcal
Atomic # 7 Polarization: -37.19 SS G_CDS: -0.33 Total: -37.51 kcal
Atomic # 8 Polarization: -4.95 SS G_CDS: -0.37 Total: -5.32 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -31.17 -8.06 -39.23 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885695830.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.232 kcal
(2) G-P(sol) polarization free energy of solvation -31.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.458 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds