Wall clock time and date at job start Mon Mar 30 2020 03:23:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99297 * 2 1
4 4 H 1.48503 * 109.46660 * 90.00372 * 3 2 1
5 5 H 1.48499 * 109.46978 * 210.00094 * 3 2 1
6 6 H 1.48492 * 109.47637 * 330.00541 * 3 2 1
7 7 C 1.37873 * 120.00466 * 180.27993 * 2 1 3
8 8 H 1.08004 * 119.99738 * 359.72069 * 7 2 1
9 9 C 1.50694 * 120.00306 * 179.72370 * 7 2 1
10 10 C 1.52996 * 109.47483 * 179.97438 * 9 7 2
11 11 N 1.46905 * 109.47312 * 183.40530 * 10 9 7
12 12 C 1.48861 * 111.00072 * 295.10801 * 11 10 9
13 13 C 1.55241 * 102.64037 * 199.49477 * 12 11 10
14 14 C 1.54937 * 102.23046 * 38.69456 * 13 12 11
15 15 H 1.08998 * 106.94397 * 91.07649 * 14 13 12
16 16 C 1.49658 * 110.58997 * 207.69734 * 14 13 12
17 17 O 1.40922 * 117.15324 * 122.81215 * 16 14 13
18 18 C 1.42789 * 115.46856 * 32.91372 * 17 16 14
19 19 C 1.52943 * 107.26080 * 295.12773 * 18 17 16
20 20 C 1.48370 * 110.99945 * 178.58598 * 11 10 9
21 21 H 1.09004 * 108.10252 * 29.66485 * 20 11 10
22 22 H 0.96991 * 120.00325 * 359.97438 * 1 2 3
23 23 H 1.08998 * 109.46996 * 300.00306 * 9 7 2
24 24 H 1.09005 * 109.46910 * 59.99357 * 9 7 2
25 25 H 1.09002 * 109.47029 * 303.40907 * 10 9 7
26 26 H 1.09004 * 109.46945 * 63.40672 * 10 9 7
27 27 H 1.08994 * 110.77535 * 317.78569 * 12 11 10
28 28 H 1.08996 * 110.77086 * 81.20688 * 12 11 10
29 29 H 1.08997 * 110.84781 * 156.88192 * 13 12 11
30 30 H 1.08999 * 110.84712 * 280.30434 * 13 12 11
31 31 H 1.09002 * 107.91045 * 244.74929 * 16 14 13
32 32 H 1.08997 * 107.91195 * 0.86956 * 16 14 13
33 33 H 1.09000 * 109.89854 * 54.56001 * 18 17 16
34 34 H 1.08998 * 109.90094 * 175.61638 * 18 17 16
35 35 H 1.09003 * 109.32069 * 183.15414 * 19 18 17
36 36 H 1.09000 * 109.31831 * 302.59838 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.4965 2.0464 1.4001
5 1 3.5466 1.4404 -0.7001
6 1 1.4464 2.6528 -0.6999
7 6 2.0047 -1.1939 -0.0058
8 1 1.4647 -2.1293 -0.0058
9 6 3.5116 -1.1939 -0.0121
10 6 4.0217 -2.6363 -0.0172
11 7 5.4888 -2.6372 0.0590
12 6 6.0865 -2.0204 -1.1569
13 6 7.5416 -2.5607 -1.1316
14 6 7.3423 -4.0180 -0.6449
15 1 7.2205 -4.6361 -1.5343
16 6 8.5615 -4.5043 0.0741
17 8 8.3903 -4.9554 1.3981
18 6 7.1381 -5.5829 1.6759
19 6 6.0510 -4.5202 1.5092
20 6 6.0187 -4.0226 0.0904
21 1 5.3267 -4.6625 -0.4572
22 1 -0.4850 0.8399 0.0004
23 1 3.8712 -0.6778 -0.9023
24 1 3.8786 -0.6821 0.8776
25 1 3.6130 -3.1692 0.8413
26 1 3.7053 -3.1303 -0.9359
27 1 5.5660 -2.3533 -2.0549
28 1 6.0764 -0.9330 -1.0836
29 1 7.9800 -2.5413 -2.1293
30 1 8.1535 -1.9941 -0.4297
31 1 8.9889 -5.3221 -0.5061
32 1 9.2886 -3.6924 0.0878
33 1 6.9689 -6.3999 0.9745
34 1 7.1325 -5.9638 2.6972
35 1 5.0835 -4.9502 1.7685
36 1 6.2603 -3.6827 2.1746
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885695830.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:47
Heat of formation + Delta-G solvation = -67.227335 kcal
Electronic energy + Delta-G solvation = -16103.235299 eV
Core-core repulsion = 13586.062375 eV
Total energy + Delta-G solvation = -2517.172924 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.37528 -38.55175 -35.66759 -34.15884 -33.37355 -31.22738 -29.62785 -26.63284
-24.88673 -24.22972 -23.16355 -21.54312 -19.65879 -19.01273 -17.56612 -17.22500
-16.85352 -16.34181 -16.11391 -15.65187 -15.50136 -14.75513 -14.43224 -14.25749
-13.90503 -13.61605 -13.28063 -12.99764 -12.59125 -12.47155 -12.37634 -12.01973
-11.82772 -11.77522 -11.64349 -11.59362 -11.37088 -11.04171 -10.79844 -10.32806
-9.41173 -8.33386 -6.38122 1.34273 1.35030 1.47763 2.33407 2.93405
2.99980 3.02059 3.47650 3.60301 3.78807 4.03719 4.12189 4.26665
4.32651 4.39009 4.42652 4.46334 4.56830 4.69049 4.74430 4.80857
4.87851 4.92780 5.00647 5.09909 5.11773 5.22167 5.24884 5.32367
5.41007 5.58450 5.99962 6.09651 6.24885 6.42444 6.69005 7.26885
8.83335
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.045739 B = 0.006390 C = 0.005968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 612.027794 B = 4380.703396 C = 4690.470062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.008 3.992
3 Si 0.952 3.048
4 H -0.268 1.268
5 H -0.249 1.249
6 H -0.281 1.281
7 C -0.535 4.535
8 H 0.032 0.968
9 C 0.003 3.997
10 C 0.076 3.924
11 N -0.524 5.524
12 C 0.024 3.976
13 C -0.105 4.105
14 C -0.121 4.121
15 H 0.084 0.916
16 C 0.079 3.921
17 O -0.396 6.396
18 C 0.070 3.930
19 C -0.143 4.143
20 C 0.074 3.926
21 H 0.034 0.966
22 H 0.268 0.732
23 H 0.018 0.982
24 H 0.018 0.982
25 H 0.058 0.942
26 H 0.019 0.981
27 H 0.041 0.959
28 H 0.074 0.926
29 H 0.098 0.902
30 H 0.079 0.921
31 H 0.060 0.940
32 H 0.090 0.910
33 H 0.063 0.937
34 H 0.114 0.886
35 H 0.069 0.931
36 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.011 -8.782 -1.410 20.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.189 4.189
3 Si 0.775 3.225
4 H -0.193 1.193
5 H -0.172 1.172
6 H -0.206 1.206
7 C -0.574 4.574
8 H 0.050 0.950
9 C -0.035 4.035
10 C -0.052 4.052
11 N -0.248 5.248
12 C -0.103 4.103
13 C -0.143 4.143
14 C -0.140 4.140
15 H 0.102 0.898
16 C 0.002 3.998
17 O -0.315 6.315
18 C -0.006 4.006
19 C -0.181 4.181
20 C -0.034 4.034
21 H 0.052 0.948
22 H 0.077 0.923
23 H 0.037 0.963
24 H 0.036 0.964
25 H 0.076 0.924
26 H 0.037 0.963
27 H 0.059 0.941
28 H 0.092 0.908
29 H 0.117 0.883
30 H 0.098 0.902
31 H 0.078 0.922
32 H 0.109 0.891
33 H 0.082 0.918
34 H 0.132 0.868
35 H 0.088 0.912
36 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 19.122 -8.372 -0.823 20.891
hybrid contribution -1.255 0.323 -0.927 1.593
sum 17.867 -8.050 -1.751 19.675
Atomic orbital electron populations
1.70056 1.08232 1.28289 1.52384 1.25966 0.95608 1.03442 0.93888
0.85631 0.79403 0.78204 0.79234 1.19272 1.17229 1.20619 1.21397
0.91842 0.93247 1.50884 0.95007 1.19383 0.93512 0.94069 0.96518
1.21961 0.86596 0.97855 0.98751 1.65237 1.06414 1.15221 1.37971
1.23380 0.95685 1.00143 0.91132 1.22826 0.95092 0.93742 1.02669
1.21341 0.94302 0.98916 0.99454 0.89800 1.21491 0.95574 0.99668
0.83047 1.87461 1.36770 1.77660 1.29598 1.22610 0.81955 0.93282
1.02780 1.21610 1.00408 1.00028 0.96087 1.21247 0.95450 0.89778
0.96966 0.94820 0.92344 0.96340 0.96373 0.92394 0.96302 0.94057
0.90760 0.88338 0.90223 0.92161 0.89148 0.91848 0.86849 0.91186
0.91582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16
2 C 0.01 0.48 5.47 84.65 0.46 0.95 16
3 Si 0.95 45.42 27.47 68.60 1.88 47.30 16
4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16
5 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16
6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
7 C -0.54 -31.80 9.66 25.60 0.25 -31.55 16
8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16
9 C 0.00 0.14 3.93 29.84 0.12 0.26 16
10 C 0.08 3.20 4.60 86.30 0.40 3.60 16
11 N -0.52 -18.17 4.90 -865.26 -4.24 -22.41 16
12 C 0.02 0.73 5.65 86.69 0.49 1.22 16
13 C -0.11 -2.28 6.38 32.03 0.20 -2.08 16
14 C -0.12 -2.62 2.81 -11.72 -0.03 -2.66 16
15 H 0.08 1.59 8.11 -2.39 -0.02 1.57 16
16 C 0.08 1.53 6.62 70.91 0.47 2.00 16
17 O -0.40 -9.26 10.61 -147.10 -1.56 -10.82 16
18 C 0.07 1.44 6.87 71.96 0.49 1.93 16
19 C -0.14 -3.74 5.64 29.73 0.17 -3.57 16
20 C 0.07 2.07 2.45 43.26 0.11 2.18 16
21 H 0.03 0.98 7.67 -2.38 -0.02 0.96 16
22 H 0.27 15.81 8.31 -92.72 -0.77 15.04 16
23 H 0.02 0.89 6.28 -2.39 -0.02 0.87 16
24 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16
25 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16
26 H 0.02 0.80 7.96 -2.38 -0.02 0.78 16
27 H 0.04 1.26 7.96 -2.39 -0.02 1.24 16
28 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16
29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16
30 H 0.08 1.71 7.66 -2.39 -0.02 1.69 16
31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16
32 H 0.09 1.59 7.22 -2.39 -0.02 1.58 16
33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16
35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16
Total: -1.00 -67.80 279.04 0.48 -67.33
By element:
Atomic # 1 Polarization: 5.43 SS G_CDS: 0.97 Total: 6.40 kcal
Atomic # 6 Polarization: -30.84 SS G_CDS: 3.12 Total: -27.72 kcal
Atomic # 7 Polarization: -78.55 SS G_CDS: -3.94 Total: -82.49 kcal
Atomic # 8 Polarization: -9.26 SS G_CDS: -1.56 Total: -10.82 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal
Total: -67.80 0.48 -67.33 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885695830.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.098 kcal
(2) G-P(sol) polarization free energy of solvation -67.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds