Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99297 * 2 1 4 4 H 1.48503 * 109.46660 * 90.00372 * 3 2 1 5 5 H 1.48499 * 109.46978 * 210.00094 * 3 2 1 6 6 H 1.48492 * 109.47637 * 330.00541 * 3 2 1 7 7 C 1.37873 * 120.00466 * 180.27993 * 2 1 3 8 8 H 1.08004 * 119.99738 * 359.72069 * 7 2 1 9 9 C 1.50694 * 120.00306 * 179.72370 * 7 2 1 10 10 C 1.52996 * 109.47483 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47312 * 183.40530 * 10 9 7 12 12 C 1.48861 * 111.00072 * 295.10801 * 11 10 9 13 13 C 1.55241 * 102.64037 * 199.49477 * 12 11 10 14 14 C 1.54937 * 102.23046 * 38.69456 * 13 12 11 15 15 H 1.08998 * 106.94397 * 91.07649 * 14 13 12 16 16 C 1.49658 * 110.58997 * 207.69734 * 14 13 12 17 17 O 1.40922 * 117.15324 * 122.81215 * 16 14 13 18 18 C 1.42789 * 115.46856 * 32.91372 * 17 16 14 19 19 C 1.52943 * 107.26080 * 295.12773 * 18 17 16 20 20 C 1.48370 * 110.99945 * 178.58598 * 11 10 9 21 21 H 1.09004 * 108.10252 * 29.66485 * 20 11 10 22 22 H 0.96991 * 120.00325 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46996 * 300.00306 * 9 7 2 24 24 H 1.09005 * 109.46910 * 59.99357 * 9 7 2 25 25 H 1.09002 * 109.47029 * 303.40907 * 10 9 7 26 26 H 1.09004 * 109.46945 * 63.40672 * 10 9 7 27 27 H 1.08994 * 110.77535 * 317.78569 * 12 11 10 28 28 H 1.08996 * 110.77086 * 81.20688 * 12 11 10 29 29 H 1.08997 * 110.84781 * 156.88192 * 13 12 11 30 30 H 1.08999 * 110.84712 * 280.30434 * 13 12 11 31 31 H 1.09002 * 107.91045 * 244.74929 * 16 14 13 32 32 H 1.08997 * 107.91195 * 0.86956 * 16 14 13 33 33 H 1.09000 * 109.89854 * 54.56001 * 18 17 16 34 34 H 1.08998 * 109.90094 * 175.61638 * 18 17 16 35 35 H 1.09003 * 109.32069 * 183.15414 * 19 18 17 36 36 H 1.09000 * 109.31831 * 302.59838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5466 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0047 -1.1939 -0.0058 8 1 1.4647 -2.1293 -0.0058 9 6 3.5116 -1.1939 -0.0121 10 6 4.0217 -2.6363 -0.0172 11 7 5.4888 -2.6372 0.0590 12 6 6.0865 -2.0204 -1.1569 13 6 7.5416 -2.5607 -1.1316 14 6 7.3423 -4.0180 -0.6449 15 1 7.2205 -4.6361 -1.5343 16 6 8.5615 -4.5043 0.0741 17 8 8.3903 -4.9554 1.3981 18 6 7.1381 -5.5829 1.6759 19 6 6.0510 -4.5202 1.5092 20 6 6.0187 -4.0226 0.0904 21 1 5.3267 -4.6625 -0.4572 22 1 -0.4850 0.8399 0.0004 23 1 3.8712 -0.6778 -0.9023 24 1 3.8786 -0.6821 0.8776 25 1 3.6130 -3.1692 0.8413 26 1 3.7053 -3.1303 -0.9359 27 1 5.5660 -2.3533 -2.0549 28 1 6.0764 -0.9330 -1.0836 29 1 7.9800 -2.5413 -2.1293 30 1 8.1535 -1.9941 -0.4297 31 1 8.9889 -5.3221 -0.5061 32 1 9.2886 -3.6924 0.0878 33 1 6.9689 -6.3999 0.9745 34 1 7.1325 -5.9638 2.6972 35 1 5.0835 -4.9502 1.7685 36 1 6.2603 -3.6827 2.1746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885695830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = -67.227335 kcal Electronic energy + Delta-G solvation = -16103.235299 eV Core-core repulsion = 13586.062375 eV Total energy + Delta-G solvation = -2517.172924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37528 -38.55175 -35.66759 -34.15884 -33.37355 -31.22738 -29.62785 -26.63284 -24.88673 -24.22972 -23.16355 -21.54312 -19.65879 -19.01273 -17.56612 -17.22500 -16.85352 -16.34181 -16.11391 -15.65187 -15.50136 -14.75513 -14.43224 -14.25749 -13.90503 -13.61605 -13.28063 -12.99764 -12.59125 -12.47155 -12.37634 -12.01973 -11.82772 -11.77522 -11.64349 -11.59362 -11.37088 -11.04171 -10.79844 -10.32806 -9.41173 -8.33386 -6.38122 1.34273 1.35030 1.47763 2.33407 2.93405 2.99980 3.02059 3.47650 3.60301 3.78807 4.03719 4.12189 4.26665 4.32651 4.39009 4.42652 4.46334 4.56830 4.69049 4.74430 4.80857 4.87851 4.92780 5.00647 5.09909 5.11773 5.22167 5.24884 5.32367 5.41007 5.58450 5.99962 6.09651 6.24885 6.42444 6.69005 7.26885 8.83335 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.006390 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.027794 B = 4380.703396 C = 4690.470062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.249 1.249 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.003 3.997 10 C 0.076 3.924 11 N -0.524 5.524 12 C 0.024 3.976 13 C -0.105 4.105 14 C -0.121 4.121 15 H 0.084 0.916 16 C 0.079 3.921 17 O -0.396 6.396 18 C 0.070 3.930 19 C -0.143 4.143 20 C 0.074 3.926 21 H 0.034 0.966 22 H 0.268 0.732 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.019 0.981 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.011 -8.782 -1.410 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.172 1.172 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.052 4.052 11 N -0.248 5.248 12 C -0.103 4.103 13 C -0.143 4.143 14 C -0.140 4.140 15 H 0.102 0.898 16 C 0.002 3.998 17 O -0.315 6.315 18 C -0.006 4.006 19 C -0.181 4.181 20 C -0.034 4.034 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.122 -8.372 -0.823 20.891 hybrid contribution -1.255 0.323 -0.927 1.593 sum 17.867 -8.050 -1.751 19.675 Atomic orbital electron populations 1.70056 1.08232 1.28289 1.52384 1.25966 0.95608 1.03442 0.93888 0.85631 0.79403 0.78204 0.79234 1.19272 1.17229 1.20619 1.21397 0.91842 0.93247 1.50884 0.95007 1.19383 0.93512 0.94069 0.96518 1.21961 0.86596 0.97855 0.98751 1.65237 1.06414 1.15221 1.37971 1.23380 0.95685 1.00143 0.91132 1.22826 0.95092 0.93742 1.02669 1.21341 0.94302 0.98916 0.99454 0.89800 1.21491 0.95574 0.99668 0.83047 1.87461 1.36770 1.77660 1.29598 1.22610 0.81955 0.93282 1.02780 1.21610 1.00408 1.00028 0.96087 1.21247 0.95450 0.89778 0.96966 0.94820 0.92344 0.96340 0.96373 0.92394 0.96302 0.94057 0.90760 0.88338 0.90223 0.92161 0.89148 0.91848 0.86849 0.91186 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 2 C 0.01 0.48 5.47 84.65 0.46 0.95 16 3 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -31.80 9.66 25.60 0.25 -31.55 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C 0.00 0.14 3.93 29.84 0.12 0.26 16 10 C 0.08 3.20 4.60 86.30 0.40 3.60 16 11 N -0.52 -18.17 4.90 -865.26 -4.24 -22.41 16 12 C 0.02 0.73 5.65 86.69 0.49 1.22 16 13 C -0.11 -2.28 6.38 32.03 0.20 -2.08 16 14 C -0.12 -2.62 2.81 -11.72 -0.03 -2.66 16 15 H 0.08 1.59 8.11 -2.39 -0.02 1.57 16 16 C 0.08 1.53 6.62 70.91 0.47 2.00 16 17 O -0.40 -9.26 10.61 -147.10 -1.56 -10.82 16 18 C 0.07 1.44 6.87 71.96 0.49 1.93 16 19 C -0.14 -3.74 5.64 29.73 0.17 -3.57 16 20 C 0.07 2.07 2.45 43.26 0.11 2.18 16 21 H 0.03 0.98 7.67 -2.38 -0.02 0.96 16 22 H 0.27 15.81 8.31 -92.72 -0.77 15.04 16 23 H 0.02 0.89 6.28 -2.39 -0.02 0.87 16 24 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 25 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16 26 H 0.02 0.80 7.96 -2.38 -0.02 0.78 16 27 H 0.04 1.26 7.96 -2.39 -0.02 1.24 16 28 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.71 7.66 -2.39 -0.02 1.69 16 31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.09 1.59 7.22 -2.39 -0.02 1.58 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 Total: -1.00 -67.80 279.04 0.48 -67.33 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.97 Total: 6.40 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.12 Total: -27.72 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.94 Total: -82.49 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.56 Total: -10.82 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -67.80 0.48 -67.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885695830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.098 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds