Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47026 * 264.33589 * 3 2 1 5 5 H 1.48498 * 109.46989 * 24.33316 * 3 2 1 6 6 H 1.48499 * 109.47264 * 144.33547 * 3 2 1 7 7 C 1.38808 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00455 * 1.07506 * 7 2 1 9 9 N 1.36935 * 119.99769 * 181.06717 * 7 2 1 10 10 C 1.47749 * 125.82694 * 305.13625 * 9 7 2 11 11 C 1.54906 * 104.84191 * 155.82921 * 10 9 7 12 12 C 1.55159 * 101.58404 * 37.09784 * 11 10 9 13 13 C 1.47031 * 125.64755 * 125.23161 * 9 7 2 14 14 H 1.09000 * 109.87962 * 300.59444 * 13 9 7 15 15 C 1.52996 * 109.88328 * 61.60854 * 13 9 7 16 16 H 1.08993 * 109.49371 * 49.08140 * 15 13 9 17 17 C 1.53096 * 109.47728 * 289.05371 * 15 13 9 18 18 C 1.53181 * 109.16324 * 182.40897 * 17 15 13 19 19 C 1.53175 * 109.03683 * 56.97990 * 18 17 15 20 20 C 1.53093 * 109.16605 * 303.02426 * 19 18 17 21 21 O 1.42903 * 109.41709 * 57.60374 * 20 19 18 22 22 H 0.97003 * 119.99756 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.28740 * 37.02622 * 10 9 7 24 24 H 1.08993 * 110.52543 * 274.75606 * 10 9 7 25 25 H 1.09002 * 111.00269 * 279.02015 * 11 10 9 26 26 H 1.09001 * 111.03530 * 155.18982 * 11 10 9 27 27 H 1.08998 * 110.72003 * 206.13565 * 12 11 10 28 28 H 1.08995 * 110.87014 * 82.93261 * 12 11 10 29 29 H 1.08993 * 109.52598 * 302.31342 * 17 15 13 30 30 H 1.09006 * 109.52246 * 62.50499 * 17 15 13 31 31 H 1.09007 * 109.54223 * 297.11974 * 18 17 15 32 32 H 1.08994 * 109.54694 * 176.84731 * 18 17 15 33 33 H 1.08992 * 109.52701 * 183.11556 * 19 18 17 34 34 H 1.09004 * 109.52184 * 62.92368 * 19 18 17 35 35 H 1.09005 * 109.47618 * 297.62608 * 20 19 18 36 36 H 1.08999 * 109.48447 * 177.59268 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6174 1.9773 -1.3932 5 1 1.3930 2.6842 0.5769 6 1 3.4828 1.4776 0.8163 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 -0.0166 9 7 3.3793 -1.2023 0.0226 10 6 4.2598 -0.5042 -0.9368 11 6 5.5875 -0.2846 -0.1696 12 6 5.6917 -1.5952 0.6543 13 6 4.2204 -1.9002 1.0061 14 1 3.9963 -1.5375 2.0093 15 6 3.9688 -3.4074 0.9296 16 1 4.0233 -3.7329 -0.1092 17 6 2.5798 -3.7222 1.4912 18 6 2.3593 -5.2379 1.4668 19 6 3.4765 -5.9182 2.2639 20 6 4.8309 -5.5185 1.6726 21 8 4.9586 -4.0954 1.6972 22 1 -0.4850 0.8401 0.0004 23 1 3.8239 0.4531 -1.2224 24 1 4.4291 -1.1215 -1.8190 25 1 5.5212 0.5843 0.4851 26 1 6.4264 -0.1886 -0.8589 27 1 6.2795 -1.4366 1.5584 28 1 6.1192 -2.3983 0.0540 29 1 2.5111 -3.3607 2.5171 30 1 1.8206 -3.2339 0.8802 31 1 2.3787 -5.5927 0.4363 32 1 1.3950 -5.4734 1.9169 33 1 3.3587 -7.0001 2.2057 34 1 3.4260 -5.6008 3.3055 35 1 4.8966 -5.8716 0.6435 36 1 5.6312 -5.9655 2.2623 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885695850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = -50.945441 kcal Electronic energy + Delta-G solvation = -16737.655199 eV Core-core repulsion = 14221.188311 eV Total energy + Delta-G solvation = -2516.466888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66468 -38.70879 -34.82986 -34.31446 -32.74866 -31.70493 -29.00811 -26.39890 -25.36398 -24.10585 -22.05259 -21.13669 -21.00014 -19.03249 -17.94510 -16.90101 -16.73034 -16.00166 -15.55972 -15.47990 -15.07014 -14.74423 -14.19662 -14.06585 -13.83549 -13.46066 -13.17459 -12.99031 -12.87679 -12.46245 -12.17979 -12.09749 -11.93943 -11.77588 -11.53974 -11.44968 -11.16140 -10.98049 -10.64553 -10.22007 -8.51845 -8.09092 -5.88265 1.30967 1.38434 1.51369 2.40995 2.77591 3.07426 3.60503 3.82066 3.96027 3.99786 4.07320 4.09602 4.21168 4.30853 4.36716 4.51605 4.58758 4.73926 4.77467 4.83423 4.93426 4.99544 5.03219 5.05254 5.08044 5.19047 5.27649 5.31206 5.40554 5.46562 5.53542 5.99853 6.26760 6.49867 6.88198 7.47551 8.26152 8.95866 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031344 B = 0.010598 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.111775 B = 2641.350146 C = 3355.508883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.011 4.011 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.309 1.309 6 H -0.253 1.253 7 C -0.250 4.250 8 H 0.059 0.941 9 N -0.614 5.614 10 C 0.104 3.896 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.157 3.843 14 H 0.023 0.977 15 C 0.103 3.897 16 H 0.041 0.959 17 C -0.158 4.158 18 C -0.120 4.120 19 C -0.148 4.148 20 C 0.055 3.945 21 O -0.393 6.393 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 -8.017 2.186 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.208 4.208 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.238 1.238 6 H -0.177 1.177 7 C -0.379 4.379 8 H 0.076 0.924 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.168 4.168 12 C -0.141 4.141 13 C 0.051 3.949 14 H 0.041 0.959 15 C 0.044 3.956 16 H 0.059 0.941 17 C -0.195 4.195 18 C -0.158 4.158 19 C -0.186 4.186 20 C -0.021 4.021 21 O -0.312 6.312 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.046 -7.831 2.288 14.549 hybrid contribution -0.832 0.782 -0.233 1.166 sum 11.214 -7.048 2.055 13.403 Atomic orbital electron populations 1.69896 1.07591 1.27684 1.53956 1.26531 0.95732 1.02146 0.96435 0.85658 0.78716 0.78929 0.78306 1.20055 1.23773 1.17688 1.18531 0.79985 0.92318 1.47044 0.92378 1.44673 1.00992 1.59677 1.28872 1.22162 0.91356 0.95168 0.93283 1.22809 0.96925 0.97776 0.99274 1.22396 0.94151 0.97100 1.00482 1.21082 0.91715 0.89583 0.92488 0.95868 1.22317 0.87173 0.93391 0.92743 0.94119 1.22423 0.99008 0.97026 1.01065 1.21593 0.99378 0.94353 1.00437 1.22157 0.95047 1.01481 0.99873 1.22748 0.97860 0.80782 1.00713 1.87830 1.52118 1.19145 1.72071 0.92666 0.95412 0.94479 0.92168 0.88035 0.89951 0.90330 0.93647 0.90873 0.92275 0.91704 0.88758 0.91706 0.93174 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.97 21.65 0.30 -58.88 16 2 C -0.01 -0.62 5.50 84.86 0.47 -0.16 16 3 Si 0.96 47.09 25.02 68.60 1.72 48.81 16 4 H -0.27 -12.92 6.81 99.48 0.68 -12.24 16 5 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 6 H -0.25 -11.86 6.48 99.48 0.64 -11.21 16 7 C -0.25 -14.12 9.30 84.03 0.78 -13.34 16 8 H 0.06 3.59 5.33 -2.91 -0.02 3.57 16 9 N -0.61 -29.46 2.46 -667.44 -1.64 -31.10 16 10 C 0.10 4.31 6.20 86.79 0.54 4.85 16 11 C -0.13 -4.26 7.08 31.99 0.23 -4.03 16 12 C -0.10 -3.39 5.94 31.78 0.19 -3.20 16 13 C 0.16 6.54 3.00 45.34 0.14 6.68 16 14 H 0.02 1.07 8.12 -2.39 -0.02 1.05 16 15 C 0.10 3.95 2.26 30.63 0.07 4.01 16 16 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.16 -6.32 5.06 30.69 0.16 -6.16 16 18 C -0.12 -3.74 6.03 30.71 0.19 -3.56 16 19 C -0.15 -3.65 6.14 30.68 0.19 -3.46 16 20 C 0.06 1.39 6.84 72.01 0.49 1.88 16 21 O -0.39 -13.02 9.77 -148.98 -1.46 -14.47 16 22 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.03 1.23 4.08 -2.38 -0.01 1.22 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 26 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.08 2.38 7.80 -2.39 -0.02 2.37 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 3.53 4.36 -2.38 -0.01 3.52 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -64.61 270.11 3.31 -61.31 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.95 Total: 10.83 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 3.43 Total: -16.50 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -1.34 Total: -89.97 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.46 Total: -14.47 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.72 Total: 48.81 kcal Total: -64.61 3.31 -61.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885695850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.363 kcal (2) G-P(sol) polarization free energy of solvation -64.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds