Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48503 * 109.47151 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47472 * 30.00167 * 3 2 1 6 6 H 1.48501 * 109.47218 * 149.99887 * 3 2 1 7 7 C 1.37875 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00288 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.48360 * 299.97819 * 9 7 2 11 11 C 1.53278 * 109.47132 * 179.97438 * 9 7 2 12 12 C 1.53179 * 109.06267 * 182.39689 * 11 9 7 13 13 C 1.53185 * 109.10912 * 56.98462 * 12 11 9 14 14 C 1.53025 * 109.18558 * 303.06999 * 13 12 11 15 15 C 1.53059 * 109.50533 * 297.29466 * 14 13 12 16 16 C 1.53042 * 109.27851 * 182.51030 * 15 14 13 17 17 N 1.46846 * 109.52543 * 59.10865 * 16 15 14 18 18 C 1.46857 * 111.21457 * 298.25709 * 17 16 15 19 19 C 1.53041 * 109.51088 * 61.75221 * 18 17 16 20 20 O 1.42848 * 109.54052 * 57.44064 * 14 13 12 21 21 H 0.97004 * 119.99570 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.64108 * 62.48198 * 11 9 7 23 23 H 1.08999 * 109.50602 * 302.23397 * 11 9 7 24 24 H 1.09002 * 109.54484 * 297.07258 * 12 11 9 25 25 H 1.08999 * 109.54222 * 176.89424 * 12 11 9 26 26 H 1.09000 * 109.52041 * 62.98095 * 13 12 11 27 27 H 1.08997 * 109.52038 * 183.10132 * 13 12 11 28 28 H 1.08996 * 109.50348 * 302.45900 * 15 14 13 29 29 H 1.09005 * 109.49986 * 62.57268 * 15 14 13 30 30 H 1.08995 * 109.46603 * 299.08590 * 16 15 14 31 31 H 1.09009 * 109.46433 * 179.11885 * 16 15 14 32 32 H 1.00898 * 111.00461 * 174.14331 * 17 16 15 33 33 H 1.09003 * 109.46196 * 301.74339 * 18 17 16 34 34 H 1.08996 * 109.45931 * 181.76655 * 18 17 16 35 35 H 1.08999 * 109.50573 * 180.92834 * 19 18 17 36 36 H 1.09004 * 109.50632 * 60.81303 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6248 -2.5575 0.8898 11 6 2.2469 -3.6642 -0.0018 12 6 1.4725 -4.9844 -0.0624 13 6 0.5766 -4.9838 -1.3049 14 6 -0.3514 -3.7681 -1.2551 15 6 -1.2661 -3.8731 -0.0324 16 6 -2.2339 -2.6876 -0.0219 17 7 -3.0308 -2.6936 -1.2554 18 6 -2.1765 -2.5452 -2.4407 19 6 -1.2074 -3.7267 -2.5235 20 8 0.4287 -2.5747 -1.1670 21 1 -0.4850 0.8401 0.0004 22 1 2.8463 -3.6349 0.9082 23 1 2.8993 -3.5844 -0.8714 24 1 0.8567 -5.0872 0.8311 25 1 2.1743 -5.8165 -0.1193 26 1 1.1959 -4.9327 -2.2004 27 1 -0.0186 -5.8967 -1.3253 28 1 -1.8313 -4.8039 -0.0796 29 1 -0.6630 -3.8586 0.8755 30 1 -1.6686 -1.7578 0.0407 31 1 -2.8973 -2.7678 0.8393 32 1 -3.7417 -1.9781 -1.2301 33 1 -1.6112 -1.6162 -2.3669 34 1 -2.7982 -2.5219 -3.3357 35 1 -0.5624 -3.6081 -3.3941 36 1 -1.7719 -4.6550 -2.6120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565505189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -60.016224 kcal Electronic energy + Delta-G solvation = -17209.733418 eV Core-core repulsion = 14692.873191 eV Total energy + Delta-G solvation = -2516.860227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.35616 -35.90929 -33.01285 -32.26815 -31.00921 -29.99123 -27.58933 -25.21286 -22.69581 -22.31684 -21.32084 -19.50205 -17.96353 -16.59947 -15.99672 -14.72771 -14.51287 -14.25755 -13.93689 -13.75048 -13.23165 -13.06398 -12.56038 -12.14383 -11.82126 -11.45689 -11.33124 -11.04003 -10.92587 -10.85085 -10.44855 -10.41214 -10.32305 -10.11777 -10.07800 -9.50136 -9.23484 -8.75643 -8.46182 -7.82065 -7.57905 -6.01849 -4.12765 3.29608 3.36233 3.39032 4.40655 4.89951 5.04239 5.36820 5.44980 5.54193 5.71519 5.76370 5.91214 5.97387 6.05884 6.20674 6.27208 6.31868 6.36515 6.41760 6.50386 6.58625 6.65708 6.75282 6.83857 6.88986 6.90775 6.97830 7.08546 7.26534 7.56225 7.77252 7.91786 8.04626 8.32106 8.80538 9.19371 9.57070 11.03997 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.012416 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.654920 B = 2254.627412 C = 2913.159776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.218 3.782 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.121 4.121 13 C -0.138 4.138 14 C 0.111 3.889 15 C -0.128 4.128 16 C 0.043 3.957 17 N -0.693 5.693 18 C 0.062 3.938 19 C -0.095 4.095 20 O -0.344 6.344 21 H 0.258 0.742 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.331 0.669 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -6.363 -1.674 7.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.125 4.125 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.162 3.838 10 H 0.035 0.965 11 C -0.183 4.183 12 C -0.158 4.158 13 C -0.176 4.176 14 C 0.070 3.930 15 C -0.166 4.166 16 C -0.086 4.086 17 N -0.323 5.323 18 C -0.067 4.067 19 C -0.133 4.133 20 O -0.263 6.263 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.096 -6.794 -1.842 7.690 hybrid contribution 0.704 1.505 0.228 1.677 sum -2.391 -5.289 -1.614 6.025 Atomic orbital electron populations 1.69900 1.05872 1.26088 1.47768 1.24994 0.94779 0.98992 0.93750 0.86642 0.79968 0.83449 0.78136 1.20628 1.21254 1.19895 1.21027 0.92655 0.89861 1.52548 0.92060 1.19713 0.86915 0.91703 0.85430 0.96464 1.22295 0.99630 0.95538 1.00806 1.21637 0.98230 0.98192 0.97761 1.22123 0.98502 0.98429 0.98498 1.21166 0.90362 0.87557 0.93922 1.22015 0.97369 0.97885 0.99348 1.22081 0.95111 1.01173 0.90209 1.60455 1.15864 1.52964 1.03009 1.21762 0.94320 0.98660 0.91979 1.21470 0.96498 0.98224 0.97065 1.88343 1.57079 1.35289 1.45586 0.93258 0.92735 0.92723 0.92563 0.93483 0.92143 0.92802 0.92989 0.91561 0.88831 0.93207 0.85363 0.92920 0.92696 0.91978 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.83 11.48 55.43 0.64 -23.20 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.43 8.80 -34.44 -0.30 -14.73 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.22 5.47 2.18 -27.74 -0.06 5.41 16 10 H 0.02 0.48 6.31 -51.93 -0.33 0.15 16 11 C -0.14 -3.09 5.38 -26.49 -0.14 -3.23 16 12 C -0.12 -2.19 5.71 -26.54 -0.15 -2.34 16 13 C -0.14 -2.49 4.92 -26.62 -0.13 -2.62 16 14 C 0.11 2.25 0.68 -90.54 -0.06 2.19 16 15 C -0.13 -2.53 4.21 -26.68 -0.11 -2.64 16 16 C 0.04 0.87 6.42 -3.83 -0.02 0.84 16 17 N -0.69 -12.59 6.84 -113.80 -0.78 -13.37 16 18 C 0.06 1.16 6.42 -3.83 -0.02 1.14 16 19 C -0.09 -1.75 5.10 -26.67 -0.14 -1.88 16 20 O -0.34 -8.51 8.13 -35.23 -0.29 -8.79 16 21 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.06 1.00 6.69 -51.93 -0.35 0.65 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.37 5.01 -51.93 -0.26 1.11 16 30 H 0.09 2.24 6.36 -51.93 -0.33 1.91 16 31 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.33 5.44 8.90 -39.29 -0.35 5.09 16 33 H 0.05 1.17 7.76 -51.93 -0.40 0.77 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -28.00 271.02 -8.40 -36.40 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.79 Total: 4.60 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.24 Total: -15.78 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.14 Total: -36.57 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.29 Total: -8.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.00 -8.40 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565505189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.621 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds