Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48503 * 109.47151 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47472 * 30.00167 * 3 2 1 6 6 H 1.48501 * 109.47218 * 149.99887 * 3 2 1 7 7 C 1.37875 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00288 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.48360 * 299.97819 * 9 7 2 11 11 C 1.53278 * 109.47132 * 179.97438 * 9 7 2 12 12 C 1.53179 * 109.06267 * 182.39689 * 11 9 7 13 13 C 1.53185 * 109.10912 * 56.98462 * 12 11 9 14 14 C 1.53025 * 109.18558 * 303.06999 * 13 12 11 15 15 C 1.53059 * 109.50533 * 297.29466 * 14 13 12 16 16 C 1.53042 * 109.27851 * 182.51030 * 15 14 13 17 17 N 1.46846 * 109.52543 * 59.10865 * 16 15 14 18 18 C 1.46857 * 111.21457 * 298.25709 * 17 16 15 19 19 C 1.53041 * 109.51088 * 61.75221 * 18 17 16 20 20 O 1.42848 * 109.54052 * 57.44064 * 14 13 12 21 21 H 0.97004 * 119.99570 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.64108 * 62.48198 * 11 9 7 23 23 H 1.08999 * 109.50602 * 302.23397 * 11 9 7 24 24 H 1.09002 * 109.54484 * 297.07258 * 12 11 9 25 25 H 1.08999 * 109.54222 * 176.89424 * 12 11 9 26 26 H 1.09000 * 109.52041 * 62.98095 * 13 12 11 27 27 H 1.08997 * 109.52038 * 183.10132 * 13 12 11 28 28 H 1.08996 * 109.50348 * 302.45900 * 15 14 13 29 29 H 1.09005 * 109.49986 * 62.57268 * 15 14 13 30 30 H 1.08995 * 109.46603 * 299.08590 * 16 15 14 31 31 H 1.09009 * 109.46433 * 179.11885 * 16 15 14 32 32 H 1.00898 * 111.00461 * 174.14331 * 17 16 15 33 33 H 1.09003 * 109.46196 * 301.74339 * 18 17 16 34 34 H 1.08996 * 109.45931 * 181.76655 * 18 17 16 35 35 H 1.08999 * 109.50573 * 180.92834 * 19 18 17 36 36 H 1.09004 * 109.50632 * 60.81303 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6248 -2.5575 0.8898 11 6 2.2469 -3.6642 -0.0018 12 6 1.4725 -4.9844 -0.0624 13 6 0.5766 -4.9838 -1.3049 14 6 -0.3514 -3.7681 -1.2551 15 6 -1.2661 -3.8731 -0.0324 16 6 -2.2339 -2.6876 -0.0219 17 7 -3.0308 -2.6936 -1.2554 18 6 -2.1765 -2.5452 -2.4407 19 6 -1.2074 -3.7267 -2.5235 20 8 0.4287 -2.5747 -1.1670 21 1 -0.4850 0.8401 0.0004 22 1 2.8463 -3.6349 0.9082 23 1 2.8993 -3.5844 -0.8714 24 1 0.8567 -5.0872 0.8311 25 1 2.1743 -5.8165 -0.1193 26 1 1.1959 -4.9327 -2.2004 27 1 -0.0186 -5.8967 -1.3253 28 1 -1.8313 -4.8039 -0.0796 29 1 -0.6630 -3.8586 0.8755 30 1 -1.6686 -1.7578 0.0407 31 1 -2.8973 -2.7678 0.8393 32 1 -3.7417 -1.9781 -1.2301 33 1 -1.6112 -1.6162 -2.3669 34 1 -2.7982 -2.5219 -3.3357 35 1 -0.5624 -3.6081 -3.3941 36 1 -1.7719 -4.6550 -2.6120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565505189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -78.432859 kcal Electronic energy + Delta-G solvation = -17210.532023 eV Core-core repulsion = 14692.873191 eV Total energy + Delta-G solvation = -2517.658832 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97912 -37.52450 -34.90602 -33.98751 -32.73623 -31.54010 -29.32370 -27.02098 -24.29583 -23.97203 -23.01906 -21.06256 -19.62174 -18.60285 -17.56910 -16.64546 -16.23128 -15.92029 -15.54917 -15.29678 -14.84761 -14.61847 -14.31489 -13.95694 -13.36378 -13.01252 -12.96361 -12.75293 -12.67827 -12.59957 -12.21319 -12.10435 -11.97101 -11.83027 -11.60481 -11.19506 -10.93328 -10.71010 -10.31354 -9.57030 -9.18742 -8.07457 -6.26951 1.39732 1.41302 1.50347 2.41851 3.07328 3.45237 3.68100 3.92304 4.04183 4.15002 4.23729 4.38671 4.46314 4.51558 4.67823 4.75634 4.79807 4.81469 4.88968 5.00653 5.03574 5.11875 5.18813 5.20828 5.29309 5.35587 5.36903 5.45975 5.61554 5.64873 5.88242 6.20358 6.31859 6.60860 6.73541 7.35172 7.48517 8.95547 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.012416 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.654920 B = 2254.627412 C = 2913.159776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.034 3.966 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.221 3.779 10 H -0.010 1.010 11 C -0.141 4.141 12 C -0.115 4.115 13 C -0.134 4.134 14 C 0.097 3.903 15 C -0.122 4.122 16 C 0.043 3.957 17 N -0.679 5.679 18 C 0.066 3.934 19 C -0.093 4.093 20 O -0.371 6.371 21 H 0.257 0.743 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.340 0.660 33 H 0.007 0.993 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -7.761 -2.257 8.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.169 4.169 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.165 3.835 10 H 0.007 0.993 11 C -0.179 4.179 12 C -0.152 4.152 13 C -0.171 4.171 14 C 0.057 3.943 15 C -0.160 4.160 16 C -0.086 4.086 17 N -0.309 5.309 18 C -0.064 4.064 19 C -0.131 4.131 20 O -0.290 6.290 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.482 -8.199 -2.425 9.232 hybrid contribution 0.776 1.935 0.405 2.124 sum -2.707 -6.264 -2.020 7.116 Atomic orbital electron populations 1.70054 1.06835 1.26526 1.47947 1.25724 0.95679 1.02021 0.93498 0.85686 0.78966 0.79673 0.77968 1.20633 1.20674 1.19280 1.21397 0.92742 0.91731 1.53286 0.92693 1.19470 0.87126 0.92236 0.84624 0.99283 1.22179 0.98985 0.96230 1.00480 1.21602 0.98540 0.97006 0.98087 1.22096 0.98319 0.98439 0.98270 1.21519 0.90782 0.87012 0.95015 1.21948 0.97108 0.98455 0.98490 1.21970 0.95315 0.99700 0.91634 1.60491 1.15293 1.53059 1.02058 1.21740 0.94540 0.96864 0.93257 1.21511 0.96331 0.99117 0.96125 1.88247 1.57828 1.38045 1.44924 0.93449 0.92573 0.93518 0.92318 0.90507 0.92204 0.89725 0.90739 0.93132 0.92873 0.92051 0.84314 0.97418 0.89768 0.91867 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.13 11.48 21.45 0.25 -49.88 16 2 C 0.03 1.91 5.40 84.65 0.46 2.37 16 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.55 -31.39 8.80 25.60 0.23 -31.17 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.22 11.36 2.18 29.94 0.07 11.43 16 10 H -0.01 -0.57 6.31 -2.39 -0.02 -0.59 16 11 C -0.14 -5.98 5.38 30.75 0.17 -5.82 16 12 C -0.12 -3.92 5.71 30.72 0.18 -3.74 16 13 C -0.13 -4.46 4.92 30.66 0.15 -4.31 16 14 C 0.10 3.81 0.68 -10.74 -0.01 3.80 16 15 C -0.12 -4.67 4.21 30.63 0.13 -4.54 16 16 C 0.04 1.73 6.42 86.33 0.55 2.29 16 17 N -0.68 -23.71 6.84 -513.96 -3.52 -27.23 16 18 C 0.07 2.37 6.42 86.33 0.55 2.93 16 19 C -0.09 -3.23 5.10 30.63 0.16 -3.08 16 20 O -0.37 -18.61 8.13 -148.98 -1.21 -19.82 16 21 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 1.98 6.69 -2.39 -0.02 1.96 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 2.08 5.01 -2.38 -0.01 2.06 16 30 H 0.05 2.62 6.36 -2.39 -0.02 2.60 16 31 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.34 10.79 8.90 -89.70 -0.80 9.99 16 33 H 0.01 0.34 7.76 -2.39 -0.02 0.32 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -61.19 271.02 0.43 -60.76 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.26 Total: 19.94 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 2.63 Total: -29.85 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.27 Total: -77.12 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.21 Total: -19.82 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -61.19 0.43 -60.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565505189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.673 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds