Wall clock time and date at job start Mon Mar 30 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 C 1.53003 * 109.47158 * 239.99875 * 2 1 3 5 5 C 1.50700 * 109.47177 * 120.00012 * 2 1 3 6 6 O 1.21285 * 119.99854 * 11.08747 * 5 2 1 7 7 N 1.34774 * 120.00264 * 191.07995 * 5 2 1 8 8 C 1.46503 * 120.00245 * 175.52501 * 7 5 2 9 9 C 1.50698 * 109.46861 * 90.00233 * 8 7 5 10 10 H 1.07996 * 120.00647 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99658 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00162 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99939 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47190 * 89.99843 * 13 11 9 15 15 H 1.48500 * 109.47124 * 209.99977 * 13 11 9 16 16 H 1.48506 * 109.46949 * 330.00133 * 13 11 9 17 17 C 1.46501 * 119.99885 * 355.53051 * 7 5 2 18 18 C 1.53005 * 117.49799 * 189.21987 * 17 7 5 19 19 C 1.53004 * 117.50167 * 120.55629 * 17 7 5 20 20 H 1.09002 * 109.46935 * 299.99783 * 1 2 3 21 21 H 1.09001 * 109.46683 * 59.99700 * 1 2 3 22 22 H 1.08997 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47386 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.46753 * 300.00027 * 3 2 1 25 25 H 1.09002 * 109.46904 * 60.00198 * 3 2 1 26 26 H 1.08994 * 109.46896 * 309.02850 * 4 2 1 27 27 H 1.08997 * 109.47062 * 69.03129 * 4 2 1 28 28 H 1.08995 * 109.47140 * 189.02738 * 4 2 1 29 29 H 1.09000 * 109.47044 * 210.00337 * 8 7 5 30 30 H 1.08996 * 109.46920 * 330.00232 * 8 7 5 31 31 H 0.97000 * 119.99704 * 179.97438 * 12 11 9 32 32 H 1.09004 * 115.54779 * 334.87891 * 17 7 5 33 33 H 1.08995 * 117.49805 * 359.97438 * 18 17 7 34 34 H 1.08995 * 117.49930 * 145.02210 * 18 17 7 35 35 H 1.08993 * 117.49400 * 214.97580 * 19 17 7 36 36 H 1.08999 * 117.49304 * 359.97277 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2627 -1.3430 1.9221 7 7 3.3369 -0.6429 1.5622 8 6 3.8079 -1.2504 2.8094 9 6 4.2069 -2.6807 2.5521 10 1 4.1188 -3.0956 1.5589 11 6 4.6844 -3.4596 3.5847 12 7 4.7922 -2.9542 4.7941 13 14 5.1782 -5.2327 3.2660 14 1 6.6141 -5.2870 2.8915 15 1 4.9563 -6.0368 4.4946 16 1 4.3567 -5.7839 2.1585 17 6 4.2838 0.0380 0.6757 18 6 5.7742 -0.1028 0.9922 19 6 5.0589 1.2262 1.2487 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1301 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.5510 -1.6917 -1.3335 27 1 1.8144 -0.1228 -2.1319 28 1 3.1180 -0.8630 -1.1723 29 1 4.6684 -0.6945 3.1819 30 1 3.0094 -1.2236 3.5508 31 1 5.1277 -3.5023 5.5206 32 1 3.9945 0.0848 -0.3742 33 1 6.0500 -0.7016 1.8601 34 1 6.4653 -0.1478 0.1506 35 1 5.2798 2.0546 0.5757 36 1 4.8639 1.5015 2.2852 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:22 Heat of formation + Delta-G solvation = -6.290592 kcal Electronic energy + Delta-G solvation = -16583.125312 eV Core-core repulsion = 14068.594804 eV Total energy + Delta-G solvation = -2514.530509 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89617 -36.85300 -35.23807 -33.16137 -31.86207 -27.81190 -27.16917 -26.64709 -23.43920 -22.53124 -21.91402 -20.23180 -18.22510 -16.40544 -16.15836 -15.49934 -14.73559 -14.49134 -14.07196 -13.81382 -13.28116 -13.18303 -12.46139 -12.16936 -12.00074 -11.87672 -11.56703 -11.38000 -11.29073 -10.98941 -10.89925 -10.69527 -10.62804 -10.49642 -10.24860 -10.08125 -9.84374 -9.45571 -8.66426 -8.41293 -7.47655 -6.01763 -4.05704 3.31232 3.37657 3.39790 3.44422 3.89147 4.37590 4.48754 4.83398 5.05023 5.17635 5.24338 5.31697 5.32363 5.45057 5.57653 5.73979 5.78513 5.91434 5.99062 6.02398 6.06569 6.12622 6.20785 6.33599 6.45001 6.49311 6.56605 6.76736 7.09813 7.45735 7.58528 7.94981 8.26425 8.48055 8.94191 9.15277 9.58981 11.06093 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028657 B = 0.009465 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.833071 B = 2957.652184 C = 3375.917654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C -0.160 4.160 4 C -0.146 4.146 5 C 0.518 3.482 6 O -0.538 6.538 7 N -0.569 5.569 8 C 0.244 3.756 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.069 3.931 18 C -0.179 4.179 19 C -0.206 4.206 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 8.838 -11.247 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 C -0.217 4.217 4 C -0.203 4.203 5 C 0.304 3.696 6 O -0.415 6.415 7 N -0.298 5.298 8 C 0.125 3.875 9 C -0.557 4.557 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.036 4.036 18 C -0.216 4.216 19 C -0.245 4.245 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.647 8.428 -10.650 13.681 hybrid contribution 0.410 -0.993 -0.033 1.075 sum -1.237 7.435 -10.683 13.074 Atomic orbital electron populations 1.21618 0.92741 1.02601 1.01134 1.20775 0.97410 0.96355 0.94686 1.22353 1.03591 0.93984 1.01786 1.22005 1.01890 1.00605 0.95769 1.20223 0.82185 0.80992 0.86164 1.90659 1.55296 1.42180 1.53366 1.47694 1.05729 1.53394 1.23020 1.19279 0.95446 0.92654 0.80091 1.21398 1.42345 0.96476 0.95454 0.92458 1.24931 0.95823 0.98520 0.94910 1.69933 1.46522 1.36768 1.00333 0.86518 0.78599 0.84682 0.77766 1.20683 1.21159 1.19920 1.21918 0.89187 0.97917 0.94604 1.23426 0.94063 0.99432 1.04702 1.23463 1.06184 0.92215 1.02642 0.92449 0.92764 0.91925 0.89755 0.92472 0.92541 0.92039 0.91984 0.91402 0.94827 0.94123 0.92793 0.85225 0.86382 0.88994 0.88975 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 7.82 37.16 0.29 -1.52 16 2 C -0.09 -1.40 0.75 -155.66 -0.12 -1.51 16 3 C -0.16 -2.08 8.02 37.16 0.30 -1.78 16 4 C -0.15 -1.98 8.17 37.16 0.30 -1.67 16 5 C 0.52 11.16 6.46 -10.99 -0.07 11.09 16 6 O -0.54 -14.06 15.61 5.55 0.09 -13.98 16 7 N -0.57 -12.29 2.78 -167.46 -0.47 -12.76 16 8 C 0.24 6.44 4.42 -5.19 -0.02 6.41 16 9 C -0.52 -14.74 9.16 -34.44 -0.32 -15.06 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 13 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.07 1.16 3.80 -67.92 -0.26 0.91 16 18 C -0.18 -2.94 9.73 -26.68 -0.26 -3.20 16 19 C -0.21 -3.03 9.15 -26.69 -0.24 -3.27 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 23 H 0.08 1.07 3.38 -51.93 -0.18 0.89 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 27 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.94 5.25 -51.93 -0.27 0.66 16 29 H 0.03 0.89 6.31 -51.93 -0.33 0.56 16 30 H 0.04 1.22 7.49 -51.93 -0.39 0.84 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.13 1.84 3.76 -51.93 -0.20 1.65 16 33 H 0.12 2.38 6.29 -51.93 -0.33 2.05 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -32.31 285.24 -6.30 -38.62 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.45 Total: 0.74 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.49 Total: -8.00 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.27 Total: -38.77 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.31 -6.30 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.327 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds