Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47235 * 120.00207 * 2 1 3 5 5 C 1.53003 * 109.46928 * 177.28223 * 4 2 1 6 6 H 1.08998 * 110.21374 * 55.13945 * 5 4 2 7 7 C 1.54481 * 110.31742 * 177.11481 * 5 4 2 8 8 C 1.54624 * 101.76574 * 93.62754 * 7 5 4 9 9 C 1.51285 * 104.19619 * 24.79540 * 8 7 5 10 10 O 1.21277 * 124.94456 * 163.76747 * 9 8 7 11 11 N 1.34422 * 110.11337 * 343.74967 * 9 8 7 12 12 C 1.46500 * 124.34772 * 179.85462 * 11 9 8 13 13 C 1.50694 * 109.47406 * 276.15037 * 12 11 9 14 14 H 1.08004 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00292 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99673 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00394 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47639 * 89.99260 * 17 15 13 19 19 H 1.48501 * 109.47400 * 209.99616 * 17 15 13 20 20 H 1.48504 * 109.46952 * 329.99744 * 17 15 13 21 21 H 1.09005 * 109.46715 * 299.99787 * 1 2 3 22 22 H 1.09005 * 109.47575 * 59.99765 * 1 2 3 23 23 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46715 * 240.00213 * 2 1 3 25 25 H 1.09005 * 109.47253 * 60.00543 * 3 2 1 26 26 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47521 * 300.00064 * 3 2 1 28 28 H 1.09003 * 109.47373 * 57.28706 * 4 2 1 29 29 H 1.08995 * 109.47487 * 297.28520 * 4 2 1 30 30 H 1.09003 * 110.97082 * 211.74619 * 7 5 4 31 31 H 1.09005 * 110.97003 * 335.46786 * 7 5 4 32 32 H 1.09000 * 110.48872 * 143.47067 * 8 7 5 33 33 H 1.09001 * 110.48455 * 266.11908 * 8 7 5 34 34 H 1.08999 * 109.46943 * 36.15249 * 12 11 9 35 35 H 1.09004 * 109.47060 * 156.14786 * 12 11 9 36 36 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5685 -0.7807 1.2154 6 1 3.9820 0.2216 1.1039 7 6 4.1082 -1.4415 2.5032 8 6 4.2406 -2.9192 2.0677 9 6 4.3972 -2.8505 0.5646 10 8 4.8043 -3.7548 -0.1335 11 7 4.0192 -1.6413 0.1153 12 6 4.0475 -1.2366 -1.2924 13 6 5.4319 -0.7615 -1.6508 14 1 6.2126 -0.7606 -0.9045 15 6 5.7018 -0.3269 -2.9312 16 7 4.7510 -0.3275 -3.8399 17 14 7.4181 0.2613 -3.3757 18 1 8.2246 -0.8869 -3.8619 19 1 7.3280 1.2900 -4.4429 20 1 8.0664 0.8485 -2.1756 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6375 -1.7340 1.2738 29 1 1.7170 -0.1802 2.1385 30 1 5.0785 -1.0272 2.7771 31 1 3.3967 -1.3378 3.3225 32 1 5.1208 -3.3736 2.5225 33 1 3.3422 -3.4769 2.3325 34 1 3.7812 -2.0869 -1.9203 35 1 3.3333 -0.4289 -1.4527 36 1 4.9409 -0.0221 -4.7408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = -54.258368 kcal Electronic energy + Delta-G solvation = -16445.445632 eV Core-core repulsion = 13928.835084 eV Total energy + Delta-G solvation = -2516.610548 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86567 -36.68524 -34.61711 -33.37012 -31.35108 -28.67953 -26.98676 -26.72414 -24.61330 -22.99325 -20.74793 -19.77501 -18.31139 -16.61067 -16.06827 -15.25624 -14.88697 -14.32195 -14.22901 -13.78154 -13.18824 -12.94623 -12.89371 -12.39508 -12.10385 -11.92374 -11.85080 -11.56785 -11.23509 -11.09042 -10.90769 -10.85911 -10.74726 -10.22092 -10.16194 -10.08620 -9.95669 -9.50197 -8.82879 -8.39670 -7.59734 -6.04756 -4.08965 3.31334 3.37316 3.39084 3.50486 4.10583 4.46347 4.77722 4.91842 5.06658 5.26668 5.29413 5.32793 5.41320 5.63268 5.71849 5.84392 5.90253 5.98885 5.99601 6.06362 6.14410 6.19727 6.23129 6.30776 6.41174 6.56344 6.72288 6.78777 7.13350 7.39064 7.64973 7.93587 8.22674 8.33868 8.90471 9.18940 9.56735 11.02808 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.010622 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.603910 B = 2635.315273 C = 3392.246766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.145 4.145 4 C -0.118 4.118 5 C 0.127 3.873 6 H 0.088 0.912 7 C -0.128 4.128 8 C -0.157 4.157 9 C 0.506 3.494 10 O -0.544 6.544 11 N -0.591 5.591 12 C 0.247 3.753 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 2.493 11.950 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.203 4.203 4 C -0.156 4.156 5 C 0.022 3.978 6 H 0.106 0.894 7 C -0.166 4.166 8 C -0.197 4.197 9 C 0.292 3.708 10 O -0.422 6.422 11 N -0.323 5.323 12 C 0.129 3.871 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.422 2.114 11.285 13.155 hybrid contribution 0.925 0.398 -0.354 1.067 sum -5.497 2.511 10.931 12.490 Atomic orbital electron populations 1.21812 0.95980 1.01093 1.01083 1.21394 0.94918 0.96929 0.99828 1.21850 1.02092 0.95619 1.00703 1.22010 0.95065 1.00525 0.98020 1.21640 0.93832 0.95952 0.86418 0.89434 1.22613 1.02007 0.94778 0.97177 1.22340 1.03827 0.97898 0.95684 1.20636 0.77626 0.82846 0.89688 1.90658 1.47258 1.40931 1.63400 1.48647 1.61833 1.12760 1.09055 1.19432 0.97558 0.96365 0.73713 1.21468 0.96140 1.42685 0.96216 0.92470 1.24917 0.97293 0.95728 0.96099 1.69928 1.32392 1.47461 1.03619 0.86511 0.84455 0.78456 0.78097 1.20563 1.21141 1.19924 0.93379 0.92926 0.93198 0.88859 0.93621 0.91651 0.92970 0.92103 0.91593 0.90442 0.90043 0.89167 0.88987 0.94816 0.93031 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.11 -1.72 2.44 -90.62 -0.22 -1.94 16 3 C -0.15 -2.16 8.56 37.16 0.32 -1.84 16 4 C -0.12 -1.63 4.32 -26.73 -0.12 -1.75 16 5 C 0.13 2.04 2.96 -67.01 -0.20 1.84 16 6 H 0.09 1.46 6.32 -51.93 -0.33 1.13 16 7 C -0.13 -1.66 6.70 -25.10 -0.17 -1.82 16 8 C -0.16 -2.37 6.86 -26.74 -0.18 -2.56 16 9 C 0.51 11.03 8.02 -10.86 -0.09 10.94 16 10 O -0.54 -14.47 17.68 5.56 0.10 -14.37 16 11 N -0.59 -12.66 2.53 -166.25 -0.42 -13.08 16 12 C 0.25 6.39 4.83 -5.20 -0.03 6.37 16 13 C -0.53 -14.99 9.38 -34.44 -0.32 -15.31 16 14 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 1.77 4.92 -51.93 -0.26 1.52 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.09 6.37 -51.93 -0.33 0.76 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.81 7.89 -51.93 -0.41 0.40 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.99 8.06 -51.93 -0.42 0.58 16 35 H 0.05 1.30 4.90 -51.93 -0.25 1.05 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -32.34 289.06 -6.78 -39.12 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.77 Total: -1.51 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.76 Total: -5.90 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.32 Total: -38.70 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.10 Total: -14.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.34 -6.78 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.135 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds