Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47235 * 120.00207 * 2 1 3 5 5 C 1.53003 * 109.46928 * 177.28223 * 4 2 1 6 6 H 1.08998 * 110.21374 * 55.13945 * 5 4 2 7 7 C 1.54481 * 110.31742 * 177.11481 * 5 4 2 8 8 C 1.54624 * 101.76574 * 93.62754 * 7 5 4 9 9 C 1.51285 * 104.19619 * 24.79540 * 8 7 5 10 10 O 1.21277 * 124.94456 * 163.76747 * 9 8 7 11 11 N 1.34422 * 110.11337 * 343.74967 * 9 8 7 12 12 C 1.46500 * 124.34772 * 179.85462 * 11 9 8 13 13 C 1.50694 * 109.47406 * 276.15037 * 12 11 9 14 14 H 1.08004 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00292 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99673 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00394 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47639 * 89.99260 * 17 15 13 19 19 H 1.48501 * 109.47400 * 209.99616 * 17 15 13 20 20 H 1.48504 * 109.46952 * 329.99744 * 17 15 13 21 21 H 1.09005 * 109.46715 * 299.99787 * 1 2 3 22 22 H 1.09005 * 109.47575 * 59.99765 * 1 2 3 23 23 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46715 * 240.00213 * 2 1 3 25 25 H 1.09005 * 109.47253 * 60.00543 * 3 2 1 26 26 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47521 * 300.00064 * 3 2 1 28 28 H 1.09003 * 109.47373 * 57.28706 * 4 2 1 29 29 H 1.08995 * 109.47487 * 297.28520 * 4 2 1 30 30 H 1.09003 * 110.97082 * 211.74619 * 7 5 4 31 31 H 1.09005 * 110.97003 * 335.46786 * 7 5 4 32 32 H 1.09000 * 110.48872 * 143.47067 * 8 7 5 33 33 H 1.09001 * 110.48455 * 266.11908 * 8 7 5 34 34 H 1.08999 * 109.46943 * 36.15249 * 12 11 9 35 35 H 1.09004 * 109.47060 * 156.14786 * 12 11 9 36 36 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5685 -0.7807 1.2154 6 1 3.9820 0.2216 1.1039 7 6 4.1082 -1.4415 2.5032 8 6 4.2406 -2.9192 2.0677 9 6 4.3972 -2.8505 0.5646 10 8 4.8043 -3.7548 -0.1335 11 7 4.0192 -1.6413 0.1153 12 6 4.0475 -1.2366 -1.2924 13 6 5.4319 -0.7615 -1.6508 14 1 6.2126 -0.7606 -0.9045 15 6 5.7018 -0.3269 -2.9312 16 7 4.7510 -0.3275 -3.8399 17 14 7.4181 0.2613 -3.3757 18 1 8.2246 -0.8869 -3.8619 19 1 7.3280 1.2900 -4.4429 20 1 8.0664 0.8485 -2.1756 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6375 -1.7340 1.2738 29 1 1.7170 -0.1802 2.1385 30 1 5.0785 -1.0272 2.7771 31 1 3.3967 -1.3378 3.3225 32 1 5.1208 -3.3736 2.5225 33 1 3.3422 -3.4769 2.3325 34 1 3.7812 -2.0869 -1.9203 35 1 3.3333 -0.4289 -1.4527 36 1 4.9409 -0.0221 -4.7408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = -75.093628 kcal Electronic energy + Delta-G solvation = -16446.349117 eV Core-core repulsion = 13928.835084 eV Total energy + Delta-G solvation = -2517.514032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38668 -38.22805 -36.01363 -35.41059 -33.12854 -29.93721 -28.89348 -27.94458 -25.81941 -25.01666 -22.05661 -21.05948 -19.92063 -18.71777 -17.66640 -16.87300 -16.42222 -16.17132 -15.63464 -15.12990 -14.60662 -14.45641 -14.32124 -14.08327 -13.69918 -13.35194 -13.04474 -12.93246 -12.84835 -12.65651 -12.56876 -12.29696 -12.14004 -12.00121 -11.83209 -11.42602 -11.32091 -11.08858 -10.69911 -10.47367 -9.38480 -8.24603 -6.39340 1.32898 1.36091 1.45633 1.81896 2.32331 2.55176 3.03910 3.54484 3.67855 3.95563 4.12785 4.15394 4.28579 4.46499 4.54576 4.73124 4.75656 4.87906 4.88742 4.96830 5.04203 5.05919 5.11101 5.15676 5.16931 5.19080 5.26818 5.47127 5.55501 5.60302 5.64847 5.94560 6.07757 6.63179 6.71757 7.25164 7.50626 8.81489 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.010622 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.603910 B = 2635.315273 C = 3392.246766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C -0.140 4.140 4 C -0.109 4.109 5 C 0.114 3.886 6 H 0.081 0.919 7 C -0.111 4.111 8 C -0.140 4.140 9 C 0.481 3.519 10 O -0.610 6.610 11 N -0.598 5.598 12 C 0.264 3.736 13 C -0.547 4.547 14 H 0.048 0.952 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.282 1.282 19 H -0.271 1.271 20 H -0.263 1.263 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.121 0.879 34 H -0.020 1.020 35 H 0.055 0.945 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 3.743 14.973 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.197 4.197 4 C -0.147 4.147 5 C 0.012 3.988 6 H 0.099 0.901 7 C -0.148 4.148 8 C -0.180 4.180 9 C 0.271 3.729 10 O -0.493 6.493 11 N -0.328 5.328 12 C 0.143 3.857 13 C -0.585 4.585 14 H 0.066 0.934 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.208 1.208 19 H -0.196 1.196 20 H -0.187 1.187 21 H 0.095 0.905 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.139 0.861 34 H -0.002 1.002 35 H 0.073 0.927 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.817 3.398 14.357 16.252 hybrid contribution 0.990 0.012 -1.332 1.659 sum -5.827 3.410 13.025 14.671 Atomic orbital electron populations 1.21749 0.93839 1.01527 1.02201 1.21349 0.96761 0.96747 0.98675 1.21797 1.00412 0.95681 1.01822 1.21984 0.92978 1.00983 0.98756 1.22055 0.95663 0.94990 0.86140 0.90147 1.22697 1.03700 0.92052 0.96373 1.22338 1.05911 1.00283 0.89501 1.22000 0.76216 0.81870 0.92846 1.90602 1.50016 1.42930 1.65792 1.48721 1.61536 1.14026 1.08537 1.18909 0.96498 0.93983 0.76295 1.21738 0.97010 1.43186 0.96584 0.93416 1.25808 1.01485 0.95668 0.95910 1.70041 1.34481 1.47919 1.04028 0.85472 0.79254 0.78056 0.78402 1.20765 1.19629 1.18704 0.90507 0.93547 0.93135 0.93935 0.90179 0.94139 0.94127 0.92047 0.87176 0.89675 0.85102 0.87581 0.86075 1.00243 0.92737 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 2 C -0.12 -3.49 2.44 -10.80 -0.03 -3.51 16 3 C -0.14 -4.02 8.56 71.98 0.62 -3.41 16 4 C -0.11 -2.70 4.32 30.59 0.13 -2.57 16 5 C 0.11 3.48 2.96 45.45 0.13 3.61 16 6 H 0.08 2.57 6.32 -2.39 -0.02 2.56 16 7 C -0.11 -2.37 6.70 31.65 0.21 -2.16 16 8 C -0.14 -3.83 6.86 30.59 0.21 -3.62 16 9 C 0.48 21.37 8.02 87.90 0.70 22.07 16 10 O -0.61 -34.15 17.68 -3.02 -0.05 -34.20 16 11 N -0.60 -26.28 2.53 -798.49 -2.02 -28.30 16 12 C 0.26 14.52 4.83 85.63 0.41 14.93 16 13 C -0.55 -32.52 9.38 25.60 0.24 -32.28 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.01 0.62 5.46 84.65 0.46 1.08 16 16 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 17 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 21 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.70 4.92 -2.38 -0.01 1.69 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.04 1.35 6.37 -2.39 -0.02 1.33 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 1.84 8.13 -2.39 -0.02 1.82 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.13 1.64 7.89 -2.38 -0.02 1.62 16 32 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 34 H -0.02 -1.32 8.06 -2.39 -0.02 -1.34 16 35 H 0.06 2.96 4.90 -2.38 -0.01 2.94 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -76.77 289.06 5.04 -71.73 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.04 Total: 7.53 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 3.76 Total: -8.44 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.74 Total: -84.57 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.05 Total: -34.20 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.77 5.04 -71.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.365 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds