Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47379 * 239.99751 * 2 1 3 5 5 C 1.52999 * 109.46957 * 119.99647 * 2 1 3 6 6 H 1.09004 * 110.88455 * 183.42855 * 5 2 1 7 7 C 1.54628 * 110.97413 * 307.24410 * 5 2 1 8 8 C 1.51279 * 104.19826 * 142.91368 * 7 5 2 9 9 O 1.21284 * 124.93794 * 163.72878 * 8 7 5 10 10 N 1.34419 * 110.11664 * 343.74621 * 8 7 5 11 11 C 1.46495 * 124.34834 * 179.56856 * 10 8 7 12 12 C 1.50700 * 109.47528 * 270.02432 * 11 10 8 13 13 H 1.08005 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99363 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00297 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47130 * 90.00024 * 16 14 12 18 18 H 1.48505 * 109.47142 * 209.99953 * 16 14 12 19 19 H 1.48498 * 109.47399 * 329.99768 * 16 14 12 20 20 C 1.46767 * 111.29882 * 359.59220 * 10 8 7 21 21 H 1.09001 * 109.47348 * 306.64076 * 1 2 3 22 22 H 1.09003 * 109.46871 * 66.63977 * 1 2 3 23 23 H 1.09000 * 109.47428 * 186.63710 * 1 2 3 24 24 H 1.08997 * 109.47104 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47131 * 299.99735 * 3 2 1 26 26 H 1.09007 * 109.46824 * 59.99727 * 3 2 1 27 27 H 1.08996 * 109.47326 * 300.00676 * 4 2 1 28 28 H 1.09002 * 109.46675 * 59.99886 * 4 2 1 29 29 H 1.08999 * 109.47341 * 179.97438 * 4 2 1 30 30 H 1.09003 * 110.48409 * 24.23257 * 7 5 2 31 31 H 1.09001 * 110.59445 * 261.65161 * 7 5 2 32 32 H 1.09004 * 109.47058 * 30.02830 * 11 10 8 33 33 H 1.09001 * 109.46692 * 150.02648 * 11 10 8 34 34 H 0.97013 * 119.99697 * 179.97438 * 15 14 12 35 35 H 1.08997 * 110.24160 * 136.01306 * 20 10 8 36 36 H 1.08989 * 110.24548 * 258.01401 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1280 -0.6822 1.3036 7 6 1.4006 -0.1322 2.5281 8 6 1.1865 -1.3332 3.4228 9 8 0.9686 -1.2813 4.6148 10 7 1.2731 -2.4661 2.7045 11 6 1.1245 -3.8122 3.2630 12 6 2.4713 -4.3247 3.7042 13 1 3.3500 -3.7089 3.5812 14 6 2.5814 -5.5791 4.2656 15 7 3.7567 -6.0260 4.6511 16 14 1.0615 -6.6437 4.4789 17 1 0.8660 -7.4763 3.2649 18 1 1.2366 -7.5254 5.6609 19 1 -0.1265 -5.7758 4.6804 20 6 1.5364 -2.1811 1.2890 21 1 -0.3634 0.6133 0.8246 22 1 -0.3633 0.4075 -0.9435 23 1 -0.3634 -1.0208 0.1188 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7209 -1.2494 30 1 0.4483 0.3438 2.2940 31 1 2.0761 0.5804 3.0012 32 1 0.4505 -3.7781 4.1190 33 1 0.7137 -4.4773 2.5033 34 1 3.8342 -6.9085 5.0465 35 1 2.3022 -2.8548 0.9048 36 1 0.6198 -2.2799 0.7076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167259584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -48.431244 kcal Electronic energy + Delta-G solvation = -16201.068344 eV Core-core repulsion = 13684.710480 eV Total energy + Delta-G solvation = -2516.357865 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18895 -37.41027 -34.95560 -32.86414 -30.98761 -28.15625 -27.41506 -27.21282 -26.25328 -22.77599 -21.87986 -18.60234 -18.37240 -17.00899 -16.12976 -15.87872 -14.69056 -14.36080 -14.18537 -14.04678 -13.51609 -13.31368 -12.99875 -12.64125 -12.24719 -12.20933 -11.90408 -11.77558 -11.65224 -11.42917 -11.15707 -11.00716 -10.66368 -10.57235 -10.34922 -10.29438 -10.09286 -9.54845 -8.95488 -8.61315 -7.67788 -6.10820 -4.10240 3.25430 3.33724 3.37165 3.38033 3.99636 4.37578 4.58252 4.58847 4.71845 5.07416 5.14939 5.22382 5.28975 5.39003 5.54960 5.58219 5.65600 5.71266 5.81643 5.86109 5.93963 5.96842 6.07178 6.10968 6.16067 6.25399 6.35430 6.48171 6.63661 6.88462 7.42862 7.57877 8.11519 8.44909 8.91907 9.04778 9.49313 11.02509 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038408 B = 0.007264 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.834055 B = 3853.463715 C = 4041.691308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.089 0.911 7 C -0.155 4.155 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.596 5.596 11 C 0.225 3.775 12 C -0.533 4.533 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.106 3.894 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 11.666 -12.901 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.110 4.110 6 H 0.107 0.893 7 C -0.195 4.195 8 C 0.296 3.704 9 O -0.422 6.422 10 N -0.327 5.327 11 C 0.105 3.895 12 C -0.571 4.571 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.018 4.018 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.552 11.422 -12.159 17.583 hybrid contribution -0.520 -0.771 0.138 0.940 sum -6.072 10.652 -12.022 17.171 Atomic orbital electron populations 1.22086 0.94683 1.02454 1.01535 1.20448 0.95606 0.95369 0.94342 1.21871 1.01103 0.95167 1.01654 1.21893 1.01244 1.00549 0.96354 1.22202 1.00811 0.94418 0.93564 0.89265 1.22526 1.03105 0.97895 0.95975 1.20669 0.76805 0.85501 0.87404 1.90662 1.50582 1.86594 1.14385 1.48304 1.69094 1.07422 1.07926 1.19577 0.98257 0.77673 0.94026 1.21365 0.93331 1.01470 1.40976 0.90650 1.24866 0.95975 0.97526 0.94656 1.69902 1.23137 1.18853 1.41529 0.86856 0.83940 0.80793 0.78232 1.20002 1.20829 1.18863 1.22137 1.00516 0.95595 0.83533 0.92260 0.92680 0.91898 0.92548 0.92772 0.92445 0.92159 0.92786 0.92435 0.88159 0.88978 0.94366 0.95518 0.92503 0.90382 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.80 37.16 0.29 -1.16 16 2 C -0.06 -0.57 0.58 -154.51 -0.09 -0.66 16 3 C -0.14 -1.24 8.33 37.16 0.31 -0.93 16 4 C -0.14 -1.32 8.25 37.16 0.31 -1.01 16 5 C -0.09 -1.20 2.51 -88.99 -0.22 -1.42 16 6 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.15 -2.32 5.44 -26.74 -0.15 -2.46 16 8 C 0.51 10.95 8.02 -10.86 -0.09 10.86 16 9 O -0.54 -14.16 17.59 5.55 0.10 -14.06 16 10 N -0.60 -12.77 2.92 -173.79 -0.51 -13.27 16 11 C 0.22 5.62 4.75 -5.20 -0.02 5.60 16 12 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16 13 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 16 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 20 C 0.11 1.69 5.68 -3.12 -0.02 1.68 16 21 H 0.06 0.57 6.21 -51.93 -0.32 0.25 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.65 5.93 -51.93 -0.31 0.35 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.50 7.54 -51.93 -0.39 0.11 16 27 H 0.06 0.58 7.19 -51.93 -0.37 0.20 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.29 5.55 -51.93 -0.29 1.01 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.04 1.02 6.98 -51.93 -0.36 0.66 16 33 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 34 H 0.27 7.66 8.31 -40.81 -0.34 7.32 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.92 5.58 -51.94 -0.29 0.63 16 LS Contribution 283.51 15.07 4.27 4.27 Total: -1.00 -33.86 283.51 -5.85 -39.71 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.70 Total: -3.12 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.12 Total: -3.41 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.27 Total: -40.32 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.10 Total: -14.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.86 -5.85 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167259584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.719 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds