Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47379 * 239.99751 * 2 1 3 5 5 C 1.52999 * 109.46957 * 119.99647 * 2 1 3 6 6 H 1.09004 * 110.88455 * 183.42855 * 5 2 1 7 7 C 1.54628 * 110.97413 * 307.24410 * 5 2 1 8 8 C 1.51279 * 104.19826 * 142.91368 * 7 5 2 9 9 O 1.21284 * 124.93794 * 163.72878 * 8 7 5 10 10 N 1.34419 * 110.11664 * 343.74621 * 8 7 5 11 11 C 1.46495 * 124.34834 * 179.56856 * 10 8 7 12 12 C 1.50700 * 109.47528 * 270.02432 * 11 10 8 13 13 H 1.08005 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99363 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00297 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47130 * 90.00024 * 16 14 12 18 18 H 1.48505 * 109.47142 * 209.99953 * 16 14 12 19 19 H 1.48498 * 109.47399 * 329.99768 * 16 14 12 20 20 C 1.46767 * 111.29882 * 359.59220 * 10 8 7 21 21 H 1.09001 * 109.47348 * 306.64076 * 1 2 3 22 22 H 1.09003 * 109.46871 * 66.63977 * 1 2 3 23 23 H 1.09000 * 109.47428 * 186.63710 * 1 2 3 24 24 H 1.08997 * 109.47104 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47131 * 299.99735 * 3 2 1 26 26 H 1.09007 * 109.46824 * 59.99727 * 3 2 1 27 27 H 1.08996 * 109.47326 * 300.00676 * 4 2 1 28 28 H 1.09002 * 109.46675 * 59.99886 * 4 2 1 29 29 H 1.08999 * 109.47341 * 179.97438 * 4 2 1 30 30 H 1.09003 * 110.48409 * 24.23257 * 7 5 2 31 31 H 1.09001 * 110.59445 * 261.65161 * 7 5 2 32 32 H 1.09004 * 109.47058 * 30.02830 * 11 10 8 33 33 H 1.09001 * 109.46692 * 150.02648 * 11 10 8 34 34 H 0.97013 * 119.99697 * 179.97438 * 15 14 12 35 35 H 1.08997 * 110.24160 * 136.01306 * 20 10 8 36 36 H 1.08989 * 110.24548 * 258.01401 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1280 -0.6822 1.3036 7 6 1.4006 -0.1322 2.5281 8 6 1.1865 -1.3332 3.4228 9 8 0.9686 -1.2813 4.6148 10 7 1.2731 -2.4661 2.7045 11 6 1.1245 -3.8122 3.2630 12 6 2.4713 -4.3247 3.7042 13 1 3.3500 -3.7089 3.5812 14 6 2.5814 -5.5791 4.2656 15 7 3.7567 -6.0260 4.6511 16 14 1.0615 -6.6437 4.4789 17 1 0.8660 -7.4763 3.2649 18 1 1.2366 -7.5254 5.6609 19 1 -0.1265 -5.7758 4.6804 20 6 1.5364 -2.1811 1.2890 21 1 -0.3634 0.6133 0.8246 22 1 -0.3633 0.4075 -0.9435 23 1 -0.3634 -1.0208 0.1188 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7209 -1.2494 30 1 0.4483 0.3438 2.2940 31 1 2.0761 0.5804 3.0012 32 1 0.4505 -3.7781 4.1190 33 1 0.7137 -4.4773 2.5033 34 1 3.8342 -6.9085 5.0465 35 1 2.3022 -2.8548 0.9048 36 1 0.6198 -2.2799 0.7076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167259584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -71.319144 kcal Electronic energy + Delta-G solvation = -16202.060838 eV Core-core repulsion = 13684.710480 eV Total energy + Delta-G solvation = -2517.350358 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59165 -38.72744 -36.61519 -34.92030 -32.61961 -29.51268 -28.77455 -28.12182 -27.30102 -24.62397 -23.24372 -20.28592 -19.38885 -19.12418 -17.58380 -17.46821 -16.34189 -16.00477 -15.23378 -15.13220 -14.99850 -14.73796 -14.50175 -14.05059 -13.86097 -13.59727 -13.19189 -12.87669 -12.66994 -12.57119 -12.44790 -12.35351 -12.18167 -12.03640 -11.82134 -11.51070 -11.30454 -11.23418 -10.87686 -10.64704 -9.44787 -8.38753 -6.45742 1.29909 1.34595 1.45288 1.69845 2.27842 2.38200 2.94499 3.44885 3.50637 3.72942 4.07848 4.23130 4.26014 4.39313 4.58140 4.63682 4.69601 4.72726 4.82890 4.85497 4.94475 4.98276 5.06581 5.15464 5.20255 5.20311 5.33979 5.38976 5.46845 5.60205 5.62469 5.66875 6.19231 6.45969 6.55904 7.14653 7.36125 8.78294 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038408 B = 0.007264 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.834055 B = 3853.463715 C = 4041.691308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.080 4.080 6 H 0.084 0.916 7 C -0.138 4.138 8 C 0.491 3.509 9 O -0.602 6.602 10 N -0.607 5.607 11 C 0.231 3.769 12 C -0.547 4.547 13 H 0.027 0.973 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.951 3.049 17 H -0.248 1.248 18 H -0.279 1.279 19 H -0.255 1.255 20 C 0.100 3.900 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.068 0.932 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 12.388 -15.052 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.049 4.049 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.099 4.099 6 H 0.102 0.898 7 C -0.177 4.177 8 C 0.280 3.720 9 O -0.484 6.484 10 N -0.337 5.337 11 C 0.109 3.891 12 C -0.585 4.585 13 H 0.045 0.955 14 C -0.187 4.187 15 N -0.583 5.583 16 Si 0.773 3.227 17 H -0.172 1.172 18 H -0.204 1.204 19 H -0.179 1.179 20 C -0.022 4.022 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.331 12.167 -14.374 20.209 hybrid contribution 0.138 -0.958 0.797 1.253 sum -7.194 11.209 -13.577 19.019 Atomic orbital electron populations 1.22100 0.93968 1.02070 1.02709 1.20421 0.96065 0.95830 0.92631 1.21873 1.01145 0.94112 1.02601 1.21905 1.01182 1.00383 0.96626 1.22232 1.00499 0.92605 0.94533 0.89764 1.22517 1.05032 0.95117 0.95079 1.21851 0.75425 0.87391 0.87335 1.90611 1.53035 1.87683 1.17100 1.48476 1.68666 1.06274 1.10314 1.19278 0.95345 0.80176 0.94302 1.21570 0.93794 1.01421 1.41711 0.95496 1.25903 0.99803 0.99093 0.93865 1.70055 1.25921 1.19730 1.42546 0.85663 0.79130 0.78685 0.79217 1.17228 1.20433 1.17920 1.22459 1.01787 0.97284 0.80623 0.92138 0.90731 0.92769 0.92614 0.91077 0.92304 0.92697 0.90946 0.92668 0.85308 0.87823 0.96251 0.92944 0.92066 0.91384 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 7.80 71.98 0.56 -1.78 16 2 C -0.05 -0.82 0.58 -52.18 -0.03 -0.85 16 3 C -0.14 -1.97 8.33 71.98 0.60 -1.37 16 4 C -0.14 -2.22 8.25 71.98 0.59 -1.62 16 5 C -0.08 -1.96 2.51 -9.74 -0.02 -1.99 16 6 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 7 C -0.14 -3.91 5.44 30.59 0.17 -3.75 16 8 C 0.49 21.30 8.02 87.90 0.71 22.01 16 9 O -0.60 -32.35 17.59 -3.04 -0.05 -32.41 16 10 N -0.61 -26.14 2.92 -822.33 -2.40 -28.54 16 11 C 0.23 11.64 4.75 85.63 0.41 12.05 16 12 C -0.55 -33.11 9.94 25.60 0.25 -32.86 16 13 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 14 C 0.01 0.70 5.47 84.65 0.46 1.17 16 15 N -0.94 -60.22 13.96 21.45 0.30 -59.92 16 16 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 17 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 20 C 0.10 3.10 5.68 86.83 0.49 3.59 16 21 H 0.06 0.93 6.21 -2.39 -0.01 0.91 16 22 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.94 5.93 -2.39 -0.01 0.93 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.82 7.54 -2.38 -0.02 0.80 16 27 H 0.05 0.91 7.19 -2.39 -0.02 0.89 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 2.95 5.55 -2.39 -0.01 2.94 16 31 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.02 1.05 6.98 -2.38 -0.02 1.03 16 33 H 0.05 2.37 7.57 -2.39 -0.02 2.35 16 34 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.10 2.41 5.58 -2.39 -0.01 2.40 16 Total: -1.00 -77.11 283.51 4.91 -72.20 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.99 Total: 7.59 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.19 Total: -5.40 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.10 Total: -88.46 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -77.11 4.91 -72.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167259584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.881 kcal (2) G-P(sol) polarization free energy of solvation -77.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds