Wall clock time and date at job start Mon Mar 30 2020 02:49:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46895 * 110.45692 * 2 1
4 4 C 1.46894 * 111.00310 * 64.26010 * 3 2 1
5 5 C 1.53008 * 109.47336 * 175.67027 * 4 3 2
6 6 C 1.50699 * 115.56074 * 320.47969 * 5 4 3
7 7 H 1.08002 * 119.99942 * 99.65800 * 6 5 4
8 8 C 1.37874 * 119.99832 * 279.65764 * 6 5 4
9 9 N 1.31513 * 120.00145 * 9.33085 * 8 6 5
10 10 Si 1.86798 * 120.00029 * 189.32527 * 8 6 5
11 11 H 1.48498 * 109.47030 * 0.02562 * 10 8 6
12 12 H 1.48505 * 109.47137 * 119.99960 * 10 8 6
13 13 H 1.48492 * 109.47721 * 240.00279 * 10 8 6
14 14 C 1.53003 * 117.49650 * 174.78906 * 5 4 3
15 15 C 1.52994 * 117.49519 * 106.16709 * 5 4 3
16 16 C 1.54509 * 110.51181 * 237.39028 * 2 1 3
17 17 C 1.54787 * 103.91343 * 241.18737 * 16 2 1
18 18 O 1.44428 * 104.80593 * 24.08479 * 17 16 2
19 19 C 1.44422 * 105.27171 * 319.41215 * 18 17 16
20 20 H 1.09010 * 109.46839 * 60.70397 * 1 2 3
21 21 H 1.09001 * 109.47578 * 180.69926 * 1 2 3
22 22 H 1.09001 * 109.47245 * 300.70634 * 1 2 3
23 23 H 1.00898 * 110.99861 * 300.30487 * 3 2 1
24 24 H 1.09005 * 109.47028 * 55.67114 * 4 3 2
25 25 H 1.08996 * 109.47439 * 295.67591 * 4 3 2
26 26 H 0.97000 * 120.00341 * 174.97597 * 9 8 6
27 27 H 1.08997 * 117.49297 * 145.02392 * 14 5 4
28 28 H 1.08992 * 117.50014 * 0.02562 * 14 5 4
29 29 H 1.09000 * 117.50338 * 0.02562 * 15 5 4
30 30 H 1.08997 * 117.49947 * 214.97827 * 15 5 4
31 31 H 1.09005 * 110.50883 * 359.86871 * 16 2 1
32 32 H 1.09003 * 110.50649 * 122.57212 * 16 2 1
33 33 H 1.08997 * 110.43906 * 265.22138 * 17 16 2
34 34 H 1.09007 * 110.40307 * 142.92751 * 17 16 2
35 35 H 1.09002 * 110.37235 * 281.68150 * 19 18 17
36 36 H 1.09005 * 110.37087 * 159.34137 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0434 1.3763 0.0000
4 6 1.6694 2.0778 1.2353
5 6 2.3106 3.4670 1.2471
6 6 3.7189 3.5377 0.7153
7 1 3.8984 3.8760 -0.2945
8 6 4.7780 3.1705 1.5180
9 7 4.5548 2.5880 2.6757
10 14 6.5303 3.5005 0.9610
11 1 6.5108 4.1617 -0.3685
12 1 7.2037 4.3866 1.9442
13 1 7.2693 2.2161 0.8647
14 6 1.9420 4.4053 2.3980
15 6 1.3980 4.6683 0.9924
16 6 2.0714 -0.7799 -1.2190
17 6 2.8800 -1.9399 -0.5895
18 8 2.3100 -2.1159 0.7258
19 6 2.0712 -0.7797 1.2189
20 1 -0.3633 0.5029 -0.8963
21 1 -0.3634 -1.0276 0.0125
22 1 -0.3634 0.5248 0.8836
23 1 1.7244 1.8812 -0.8133
24 1 2.0196 1.5086 2.0965
25 1 0.5851 2.1776 1.2824
26 1 5.2987 2.2640 3.2072
27 1 2.7182 5.0738 2.7705
28 1 1.2432 4.0329 3.1469
29 1 0.3409 4.4690 0.8167
30 1 1.8163 5.5098 0.4402
31 1 1.2490 -1.1674 -1.8204
32 1 2.7200 -0.1441 -1.8217
33 1 3.9338 -1.6720 -0.5135
34 1 2.7619 -2.8492 -1.1789
35 1 3.0010 -0.3337 1.5721
36 1 1.3300 -0.7968 2.0180
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000229455880.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:09
Heat of formation + Delta-G solvation = -37.039855 kcal
Electronic energy + Delta-G solvation = -16469.588323 eV
Core-core repulsion = 13953.724426 eV
Total energy + Delta-G solvation = -2515.863897 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.75593 -38.55313 -36.18137 -33.84649 -31.87226 -30.21368 -27.50011 -27.33033
-26.09074 -23.37759 -22.89194 -20.83144 -20.44380 -17.93947 -17.22003 -16.99987
-16.57393 -16.10946 -15.86702 -15.18427 -15.01051 -14.47265 -14.32912 -14.05519
-13.43376 -13.14017 -13.06157 -12.87358 -12.69791 -12.39941 -12.31686 -12.13474
-11.96419 -11.87759 -11.57741 -11.25464 -10.70781 -10.62946 -10.31613 -9.85164
-8.91796 -7.95427 -5.98887 1.42062 1.46205 1.54501 2.51599 2.99791
3.33869 3.47919 3.60992 3.64107 3.90022 4.05921 4.33444 4.38480
4.45804 4.54182 4.66201 4.70652 4.77265 4.83045 4.87098 4.88980
4.95612 5.02206 5.08370 5.14648 5.19508 5.29264 5.31291 5.63767
5.73091 5.81903 5.94253 6.44558 6.63136 6.84632 7.02041 7.64432
9.13215
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.023535 B = 0.010571 C = 0.008381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.427454 B = 2648.196050 C = 3340.019748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.078 3.922
3 N -0.654 5.654
4 C 0.122 3.878
5 C 0.024 3.976
6 C -0.466 4.466
7 H 0.048 0.952
8 C 0.032 3.968
9 N -0.908 5.908
10 Si 0.935 3.065
11 H -0.269 1.269
12 H -0.289 1.289
13 H -0.289 1.289
14 C -0.177 4.177
15 C -0.190 4.190
16 C -0.135 4.135
17 C 0.044 3.956
18 O -0.396 6.396
19 C 0.062 3.938
20 H 0.069 0.931
21 H 0.069 0.931
22 H 0.049 0.951
23 H 0.339 0.661
24 H 0.044 0.956
25 H 0.012 0.988
26 H 0.252 0.748
27 H 0.056 0.944
28 H 0.070 0.930
29 H 0.089 0.911
30 H 0.076 0.924
31 H 0.096 0.904
32 H 0.083 0.917
33 H 0.046 0.954
34 H 0.115 0.885
35 H 0.041 0.959
36 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.218 -5.705 -6.702 11.383
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.014 4.014
3 N -0.285 5.285
4 C -0.007 4.007
5 C 0.023 3.977
6 C -0.504 4.504
7 H 0.066 0.934
8 C -0.167 4.167
9 N -0.548 5.548
10 Si 0.763 3.237
11 H -0.193 1.193
12 H -0.216 1.216
13 H -0.216 1.216
14 C -0.215 4.215
15 C -0.227 4.227
16 C -0.173 4.173
17 C -0.033 4.033
18 O -0.314 6.314
19 C -0.015 4.015
20 H 0.088 0.912
21 H 0.088 0.912
22 H 0.068 0.932
23 H 0.158 0.842
24 H 0.063 0.937
25 H 0.030 0.970
26 H 0.061 0.939
27 H 0.075 0.925
28 H 0.089 0.911
29 H 0.107 0.893
30 H 0.095 0.905
31 H 0.115 0.885
32 H 0.101 0.899
33 H 0.065 0.935
34 H 0.133 0.867
35 H 0.060 0.940
36 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -6.530 -6.102 -6.183 10.868
hybrid contribution 0.415 0.671 0.079 0.793
sum -6.115 -5.431 -6.104 10.205
Atomic orbital electron populations
1.22407 0.95035 1.02711 1.02151 1.22326 0.93550 0.90387 0.95126
1.60382 1.63020 1.00759 1.04346 1.21185 0.93188 0.94464 0.91839
1.19055 0.93555 0.87378 0.97663 1.20365 0.89678 1.42707 0.97675
0.93421 1.25404 1.01190 0.95176 0.94969 1.70070 1.31161 1.39885
1.13636 0.85865 0.82266 0.77335 0.78204 1.19339 1.21593 1.21585
1.22492 1.01891 1.05884 0.91211 1.23042 0.98244 1.02295 0.99083
1.23013 1.00733 0.96592 0.96957 1.23567 0.96611 0.99776 0.83315
1.89019 1.83263 1.26380 1.32779 1.23371 0.99680 0.82029 0.96447
0.91197 0.91170 0.93197 0.84216 0.93736 0.97001 0.93925 0.92535
0.91127 0.89280 0.90547 0.88521 0.89864 0.93542 0.86680 0.94016
0.89718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.32 8.15 71.98 0.59 -3.73 16
2 C 0.08 2.48 0.94 4.55 0.00 2.48 16
3 N -0.65 -24.93 5.29 -465.17 -2.46 -27.39 16
4 C 0.12 5.20 5.13 86.31 0.44 5.64 16
5 C 0.02 1.13 1.64 -52.93 -0.09 1.05 16
6 C -0.47 -24.65 8.12 25.60 0.21 -24.44 16
7 H 0.05 2.55 7.83 -2.91 -0.02 2.53 16
8 C 0.03 1.73 5.41 84.65 0.46 2.19 16
9 N -0.91 -52.02 13.21 21.45 0.28 -51.73 16
10 Si 0.94 44.23 29.55 68.60 2.03 46.26 16
11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16
12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16
13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
14 C -0.18 -8.11 9.82 30.60 0.30 -7.81 16
15 C -0.19 -7.71 9.88 30.59 0.30 -7.41 16
16 C -0.14 -3.62 6.54 31.72 0.21 -3.42 16
17 C 0.04 1.24 7.64 72.59 0.55 1.79 16
18 O -0.40 -13.67 11.65 -148.98 -1.74 -15.40 16
19 C 0.06 2.27 5.53 72.49 0.40 2.67 16
20 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16
21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
22 H 0.05 1.39 6.66 -2.39 -0.02 1.37 16
23 H 0.34 12.03 8.83 -89.70 -0.79 11.24 16
24 H 0.04 2.16 6.70 -2.38 -0.02 2.14 16
25 H 0.01 0.46 6.50 -2.39 -0.02 0.45 16
26 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16
27 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16
28 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16
29 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16
30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16
31 H 0.10 2.05 7.73 -2.38 -0.02 2.03 16
32 H 0.08 2.31 7.97 -2.39 -0.02 2.29 16
33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
34 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16
35 H 0.04 1.88 7.65 -2.39 -0.02 1.86 16
36 H 0.08 2.96 7.87 -2.38 -0.02 2.94 16
Total: -1.00 -59.31 290.96 1.75 -57.56
By element:
Atomic # 1 Polarization: 21.43 SS G_CDS: 0.26 Total: 21.69 kcal
Atomic # 6 Polarization: -34.36 SS G_CDS: 3.38 Total: -30.99 kcal
Atomic # 7 Polarization: -76.95 SS G_CDS: -2.18 Total: -79.12 kcal
Atomic # 8 Polarization: -13.67 SS G_CDS: -1.74 Total: -15.40 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Total: -59.31 1.75 -57.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000229455880.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.519 kcal
(2) G-P(sol) polarization free energy of solvation -59.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds