Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 110.45692 * 2 1 4 4 C 1.46894 * 111.00310 * 64.26010 * 3 2 1 5 5 C 1.53008 * 109.47336 * 175.67027 * 4 3 2 6 6 C 1.50699 * 115.56074 * 320.47969 * 5 4 3 7 7 H 1.08002 * 119.99942 * 99.65800 * 6 5 4 8 8 C 1.37874 * 119.99832 * 279.65764 * 6 5 4 9 9 N 1.31513 * 120.00145 * 9.33085 * 8 6 5 10 10 Si 1.86798 * 120.00029 * 189.32527 * 8 6 5 11 11 H 1.48498 * 109.47030 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47137 * 119.99960 * 10 8 6 13 13 H 1.48492 * 109.47721 * 240.00279 * 10 8 6 14 14 C 1.53003 * 117.49650 * 174.78906 * 5 4 3 15 15 C 1.52994 * 117.49519 * 106.16709 * 5 4 3 16 16 C 1.54509 * 110.51181 * 237.39028 * 2 1 3 17 17 C 1.54787 * 103.91343 * 241.18737 * 16 2 1 18 18 O 1.44428 * 104.80593 * 24.08479 * 17 16 2 19 19 C 1.44422 * 105.27171 * 319.41215 * 18 17 16 20 20 H 1.09010 * 109.46839 * 60.70397 * 1 2 3 21 21 H 1.09001 * 109.47578 * 180.69926 * 1 2 3 22 22 H 1.09001 * 109.47245 * 300.70634 * 1 2 3 23 23 H 1.00898 * 110.99861 * 300.30487 * 3 2 1 24 24 H 1.09005 * 109.47028 * 55.67114 * 4 3 2 25 25 H 1.08996 * 109.47439 * 295.67591 * 4 3 2 26 26 H 0.97000 * 120.00341 * 174.97597 * 9 8 6 27 27 H 1.08997 * 117.49297 * 145.02392 * 14 5 4 28 28 H 1.08992 * 117.50014 * 0.02562 * 14 5 4 29 29 H 1.09000 * 117.50338 * 0.02562 * 15 5 4 30 30 H 1.08997 * 117.49947 * 214.97827 * 15 5 4 31 31 H 1.09005 * 110.50883 * 359.86871 * 16 2 1 32 32 H 1.09003 * 110.50649 * 122.57212 * 16 2 1 33 33 H 1.08997 * 110.43906 * 265.22138 * 17 16 2 34 34 H 1.09007 * 110.40307 * 142.92751 * 17 16 2 35 35 H 1.09002 * 110.37235 * 281.68150 * 19 18 17 36 36 H 1.09005 * 110.37087 * 159.34137 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0434 1.3763 0.0000 4 6 1.6694 2.0778 1.2353 5 6 2.3106 3.4670 1.2471 6 6 3.7189 3.5377 0.7153 7 1 3.8984 3.8760 -0.2945 8 6 4.7780 3.1705 1.5180 9 7 4.5548 2.5880 2.6757 10 14 6.5303 3.5005 0.9610 11 1 6.5108 4.1617 -0.3685 12 1 7.2037 4.3866 1.9442 13 1 7.2693 2.2161 0.8647 14 6 1.9420 4.4053 2.3980 15 6 1.3980 4.6683 0.9924 16 6 2.0714 -0.7799 -1.2190 17 6 2.8800 -1.9399 -0.5895 18 8 2.3100 -2.1159 0.7258 19 6 2.0712 -0.7797 1.2189 20 1 -0.3633 0.5029 -0.8963 21 1 -0.3634 -1.0276 0.0125 22 1 -0.3634 0.5248 0.8836 23 1 1.7244 1.8812 -0.8133 24 1 2.0196 1.5086 2.0965 25 1 0.5851 2.1776 1.2824 26 1 5.2987 2.2640 3.2072 27 1 2.7182 5.0738 2.7705 28 1 1.2432 4.0329 3.1469 29 1 0.3409 4.4690 0.8167 30 1 1.8163 5.5098 0.4402 31 1 1.2490 -1.1674 -1.8204 32 1 2.7200 -0.1441 -1.8217 33 1 3.9338 -1.6720 -0.5135 34 1 2.7619 -2.8492 -1.1789 35 1 3.0010 -0.3337 1.5721 36 1 1.3300 -0.7968 2.0180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229455880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -37.039855 kcal Electronic energy + Delta-G solvation = -16469.588323 eV Core-core repulsion = 13953.724426 eV Total energy + Delta-G solvation = -2515.863897 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75593 -38.55313 -36.18137 -33.84649 -31.87226 -30.21368 -27.50011 -27.33033 -26.09074 -23.37759 -22.89194 -20.83144 -20.44380 -17.93947 -17.22003 -16.99987 -16.57393 -16.10946 -15.86702 -15.18427 -15.01051 -14.47265 -14.32912 -14.05519 -13.43376 -13.14017 -13.06157 -12.87358 -12.69791 -12.39941 -12.31686 -12.13474 -11.96419 -11.87759 -11.57741 -11.25464 -10.70781 -10.62946 -10.31613 -9.85164 -8.91796 -7.95427 -5.98887 1.42062 1.46205 1.54501 2.51599 2.99791 3.33869 3.47919 3.60992 3.64107 3.90022 4.05921 4.33444 4.38480 4.45804 4.54182 4.66201 4.70652 4.77265 4.83045 4.87098 4.88980 4.95612 5.02206 5.08370 5.14648 5.19508 5.29264 5.31291 5.63767 5.73091 5.81903 5.94253 6.44558 6.63136 6.84632 7.02041 7.64432 9.13215 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.010571 C = 0.008381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.427454 B = 2648.196050 C = 3340.019748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 N -0.654 5.654 4 C 0.122 3.878 5 C 0.024 3.976 6 C -0.466 4.466 7 H 0.048 0.952 8 C 0.032 3.968 9 N -0.908 5.908 10 Si 0.935 3.065 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.289 1.289 14 C -0.177 4.177 15 C -0.190 4.190 16 C -0.135 4.135 17 C 0.044 3.956 18 O -0.396 6.396 19 C 0.062 3.938 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.339 0.661 24 H 0.044 0.956 25 H 0.012 0.988 26 H 0.252 0.748 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.041 0.959 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -5.705 -6.702 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.285 5.285 4 C -0.007 4.007 5 C 0.023 3.977 6 C -0.504 4.504 7 H 0.066 0.934 8 C -0.167 4.167 9 N -0.548 5.548 10 Si 0.763 3.237 11 H -0.193 1.193 12 H -0.216 1.216 13 H -0.216 1.216 14 C -0.215 4.215 15 C -0.227 4.227 16 C -0.173 4.173 17 C -0.033 4.033 18 O -0.314 6.314 19 C -0.015 4.015 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.158 0.842 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.060 0.940 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.530 -6.102 -6.183 10.868 hybrid contribution 0.415 0.671 0.079 0.793 sum -6.115 -5.431 -6.104 10.205 Atomic orbital electron populations 1.22407 0.95035 1.02711 1.02151 1.22326 0.93550 0.90387 0.95126 1.60382 1.63020 1.00759 1.04346 1.21185 0.93188 0.94464 0.91839 1.19055 0.93555 0.87378 0.97663 1.20365 0.89678 1.42707 0.97675 0.93421 1.25404 1.01190 0.95176 0.94969 1.70070 1.31161 1.39885 1.13636 0.85865 0.82266 0.77335 0.78204 1.19339 1.21593 1.21585 1.22492 1.01891 1.05884 0.91211 1.23042 0.98244 1.02295 0.99083 1.23013 1.00733 0.96592 0.96957 1.23567 0.96611 0.99776 0.83315 1.89019 1.83263 1.26380 1.32779 1.23371 0.99680 0.82029 0.96447 0.91197 0.91170 0.93197 0.84216 0.93736 0.97001 0.93925 0.92535 0.91127 0.89280 0.90547 0.88521 0.89864 0.93542 0.86680 0.94016 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 8.15 71.98 0.59 -3.73 16 2 C 0.08 2.48 0.94 4.55 0.00 2.48 16 3 N -0.65 -24.93 5.29 -465.17 -2.46 -27.39 16 4 C 0.12 5.20 5.13 86.31 0.44 5.64 16 5 C 0.02 1.13 1.64 -52.93 -0.09 1.05 16 6 C -0.47 -24.65 8.12 25.60 0.21 -24.44 16 7 H 0.05 2.55 7.83 -2.91 -0.02 2.53 16 8 C 0.03 1.73 5.41 84.65 0.46 2.19 16 9 N -0.91 -52.02 13.21 21.45 0.28 -51.73 16 10 Si 0.94 44.23 29.55 68.60 2.03 46.26 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 C -0.18 -8.11 9.82 30.60 0.30 -7.81 16 15 C -0.19 -7.71 9.88 30.59 0.30 -7.41 16 16 C -0.14 -3.62 6.54 31.72 0.21 -3.42 16 17 C 0.04 1.24 7.64 72.59 0.55 1.79 16 18 O -0.40 -13.67 11.65 -148.98 -1.74 -15.40 16 19 C 0.06 2.27 5.53 72.49 0.40 2.67 16 20 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.05 1.39 6.66 -2.39 -0.02 1.37 16 23 H 0.34 12.03 8.83 -89.70 -0.79 11.24 16 24 H 0.04 2.16 6.70 -2.38 -0.02 2.14 16 25 H 0.01 0.46 6.50 -2.39 -0.02 0.45 16 26 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 27 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16 30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.10 2.05 7.73 -2.38 -0.02 2.03 16 32 H 0.08 2.31 7.97 -2.39 -0.02 2.29 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.04 1.88 7.65 -2.39 -0.02 1.86 16 36 H 0.08 2.96 7.87 -2.38 -0.02 2.94 16 Total: -1.00 -59.31 290.96 1.75 -57.56 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.26 Total: 21.69 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.38 Total: -30.99 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.18 Total: -79.12 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.74 Total: -15.40 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -59.31 1.75 -57.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229455880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.519 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds