Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00559 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.43339 * 36.09154 * 12 11 10 14 14 C 1.54817 * 110.48698 * 273.55209 * 12 11 10 15 15 C 1.55003 * 102.08961 * 220.43905 * 14 12 11 16 16 O 1.44388 * 103.48838 * 37.02241 * 15 14 12 17 17 C 1.43745 * 106.97244 * 319.93890 * 16 15 14 18 18 H 1.09005 * 109.87858 * 267.08771 * 17 16 15 19 19 C 1.52999 * 109.87494 * 145.94374 * 17 16 15 20 20 C 1.53002 * 117.50183 * 130.79092 * 19 17 16 21 21 C 1.52999 * 117.50540 * 62.16549 * 19 17 16 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.00899 * 111.00176 * 303.95826 * 11 10 9 28 28 H 1.08996 * 110.90756 * 338.63213 * 14 12 11 29 29 H 1.08991 * 110.90821 * 102.24162 * 14 12 11 30 30 H 1.08998 * 110.61728 * 155.51726 * 15 14 12 31 31 H 1.08994 * 110.61690 * 278.52469 * 15 14 12 32 32 H 1.09004 * 115.54545 * 276.49176 * 19 17 16 33 33 H 1.09003 * 117.49651 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.50256 * 145.01946 * 20 19 17 35 35 H 1.09003 * 117.50214 * 214.98349 * 21 19 17 36 36 H 1.09003 * 117.49500 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0018 13 1 3.3160 -5.8520 0.6034 14 6 2.8459 -6.4413 -1.4455 15 6 2.8299 -7.9908 -1.4061 16 8 1.7066 -8.2944 -0.5513 17 6 1.7287 -7.3416 0.5248 18 1 2.2803 -7.7510 1.3711 19 6 0.2982 -7.0018 0.9481 20 6 -0.0296 -7.0606 2.4414 21 6 -0.5651 -8.1392 1.4976 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8744 -4.9841 0.7827 28 1 2.1184 -6.0630 -2.1636 29 1 3.8445 -6.0682 -1.6722 30 1 2.6734 -8.3984 -2.4048 31 1 3.7549 -8.3733 -0.9748 32 1 -0.1985 -6.2352 0.3532 33 1 0.7738 -7.3417 3.1223 34 1 -0.7420 -6.3325 2.8294 35 1 -1.6298 -8.1207 1.2647 36 1 -0.1140 -9.1297 1.5573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236173043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = -21.718962 kcal Electronic energy + Delta-G solvation = -15685.139174 eV Core-core repulsion = 13169.939641 eV Total energy + Delta-G solvation = -2515.199533 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85942 -36.54971 -35.53058 -33.00967 -30.91536 -29.47772 -27.37077 -23.93563 -23.34986 -22.29587 -21.34922 -20.60399 -19.39365 -16.62781 -16.37447 -16.02662 -15.33799 -15.08257 -14.46112 -14.38472 -13.89818 -13.47151 -12.83461 -12.39227 -12.04559 -11.83607 -11.49537 -11.36505 -11.23711 -11.02516 -10.87422 -10.67461 -10.51659 -10.21788 -10.00082 -9.99548 -9.63573 -9.35182 -9.13586 -8.36585 -7.86746 -6.00714 -4.03245 3.30450 3.37833 3.41734 3.57242 4.23421 4.41228 4.58314 4.64167 4.74096 4.98684 5.07351 5.13441 5.26766 5.35418 5.42763 5.49975 5.69523 5.71911 5.75982 5.81375 5.94346 6.00429 6.17465 6.28287 6.31424 6.41084 6.44985 6.95135 6.98842 7.46951 7.71478 7.81390 7.94157 8.07080 8.42633 9.04153 9.60656 11.10782 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036248 B = 0.005712 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.261444 B = 4900.514552 C = 5449.359604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.064 3.936 11 N -0.681 5.681 12 C 0.058 3.942 13 H 0.052 0.948 14 C -0.145 4.145 15 C 0.046 3.954 16 O -0.368 6.368 17 C 0.109 3.891 18 H 0.063 0.937 19 C -0.161 4.161 20 C -0.178 4.178 21 C -0.167 4.167 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.344 0.656 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -15.408 1.483 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.064 4.064 11 N -0.316 5.316 12 C -0.053 4.053 13 H 0.070 0.930 14 C -0.183 4.183 15 C -0.031 4.031 16 O -0.287 6.287 17 C 0.051 3.949 18 H 0.081 0.919 19 C -0.179 4.179 20 C -0.215 4.215 21 C -0.205 4.205 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.166 0.834 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.009 -15.459 0.789 15.768 hybrid contribution 1.015 1.217 0.930 1.838 sum 4.024 -14.241 1.719 14.898 Atomic orbital electron populations 1.69982 1.06035 1.26487 1.50729 1.25003 0.94840 0.99227 0.95301 0.86534 0.80059 0.83788 0.77595 1.19791 1.20963 1.21020 1.21208 0.92996 0.91001 1.50765 0.92744 1.19068 0.94020 0.90437 0.97702 1.22220 0.97053 0.88591 0.98571 1.60972 1.19096 1.01442 1.50043 1.22811 0.94769 0.91725 0.95964 0.93037 1.23216 1.02403 0.94964 0.97746 1.23517 0.89413 0.95104 0.95034 1.88883 1.48469 1.53118 1.38271 1.22357 0.94297 0.88433 0.89780 0.91907 1.22485 0.96034 1.02671 0.96705 1.23013 1.03752 1.02701 0.92029 1.22797 0.99569 0.94402 1.03685 0.93036 0.96832 0.95639 0.92399 0.96674 0.83422 0.89076 0.90799 0.89112 0.92719 0.84965 0.89055 0.88163 0.88791 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.06 1.34 5.47 -3.83 -0.02 1.32 16 11 N -0.68 -12.19 5.43 -105.12 -0.57 -12.76 16 12 C 0.06 0.88 3.35 -66.19 -0.22 0.65 16 13 H 0.05 0.76 7.87 -51.93 -0.41 0.36 16 14 C -0.14 -1.98 6.80 -24.72 -0.17 -2.15 16 15 C 0.05 0.55 7.72 38.22 0.29 0.84 16 16 O -0.37 -5.33 11.14 -35.23 -0.39 -5.72 16 17 C 0.11 1.51 3.60 -26.16 -0.09 1.42 16 18 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 19 C -0.16 -2.18 3.97 -90.62 -0.36 -2.54 16 20 C -0.18 -2.08 10.18 -26.73 -0.27 -2.35 16 21 C -0.17 -1.98 10.20 -26.73 -0.27 -2.25 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 26 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.34 6.00 5.96 -39.29 -0.23 5.76 16 28 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.13 2.04 6.38 -51.93 -0.33 1.71 16 33 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -30.26 293.47 -8.48 -38.74 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.99 Total: 3.00 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.67 Total: -18.12 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.17 Total: -39.00 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.39 Total: -5.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.26 -8.48 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236173043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.024 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds