Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00559 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.43339 * 36.09154 * 12 11 10 14 14 C 1.54817 * 110.48698 * 273.55209 * 12 11 10 15 15 C 1.55003 * 102.08961 * 220.43905 * 14 12 11 16 16 O 1.44388 * 103.48838 * 37.02241 * 15 14 12 17 17 C 1.43745 * 106.97244 * 319.93890 * 16 15 14 18 18 H 1.09005 * 109.87858 * 267.08771 * 17 16 15 19 19 C 1.52999 * 109.87494 * 145.94374 * 17 16 15 20 20 C 1.53002 * 117.50183 * 130.79092 * 19 17 16 21 21 C 1.52999 * 117.50540 * 62.16549 * 19 17 16 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.00899 * 111.00176 * 303.95826 * 11 10 9 28 28 H 1.08996 * 110.90756 * 338.63213 * 14 12 11 29 29 H 1.08991 * 110.90821 * 102.24162 * 14 12 11 30 30 H 1.08998 * 110.61728 * 155.51726 * 15 14 12 31 31 H 1.08994 * 110.61690 * 278.52469 * 15 14 12 32 32 H 1.09004 * 115.54545 * 276.49176 * 19 17 16 33 33 H 1.09003 * 117.49651 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.50256 * 145.01946 * 20 19 17 35 35 H 1.09003 * 117.50214 * 214.98349 * 21 19 17 36 36 H 1.09003 * 117.49500 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0018 13 1 3.3160 -5.8520 0.6034 14 6 2.8459 -6.4413 -1.4455 15 6 2.8299 -7.9908 -1.4061 16 8 1.7066 -8.2944 -0.5513 17 6 1.7287 -7.3416 0.5248 18 1 2.2803 -7.7510 1.3711 19 6 0.2982 -7.0018 0.9481 20 6 -0.0296 -7.0606 2.4414 21 6 -0.5651 -8.1392 1.4976 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8744 -4.9841 0.7827 28 1 2.1184 -6.0630 -2.1636 29 1 3.8445 -6.0682 -1.6722 30 1 2.6734 -8.3984 -2.4048 31 1 3.7549 -8.3733 -0.9748 32 1 -0.1985 -6.2352 0.3532 33 1 0.7738 -7.3417 3.1223 34 1 -0.7420 -6.3325 2.8294 35 1 -1.6298 -8.1207 1.2647 36 1 -0.1140 -9.1297 1.5573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236173043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = -40.997930 kcal Electronic energy + Delta-G solvation = -15685.975172 eV Core-core repulsion = 13169.939641 eV Total energy + Delta-G solvation = -2516.035532 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95495 -37.54546 -37.07024 -35.01544 -32.46814 -30.80026 -28.90381 -25.87474 -24.40028 -23.24990 -22.47348 -22.40054 -20.56819 -18.49739 -17.74123 -17.18054 -16.69747 -16.40977 -16.18527 -15.56617 -15.05781 -14.94615 -14.37287 -14.22784 -13.42807 -13.11244 -13.03036 -12.88437 -12.47562 -12.39061 -12.31634 -12.19735 -12.01877 -11.66993 -11.41568 -11.25117 -11.18969 -10.97002 -10.64370 -10.57281 -9.32152 -8.21291 -6.32866 1.40067 1.40610 1.53857 2.39832 2.58117 3.12367 3.22608 3.28348 3.53110 3.67197 3.96088 4.09311 4.14628 4.25355 4.39856 4.42741 4.47247 4.57539 4.67395 4.78586 4.79165 4.86832 4.92232 5.03391 5.05749 5.20739 5.26160 5.34251 5.44109 5.65626 5.77672 5.94764 6.12650 6.27601 6.50975 6.84522 7.36643 8.91171 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036248 B = 0.005712 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.261444 B = 4900.514552 C = 5449.359604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.686 5.686 12 C 0.053 3.947 13 H 0.059 0.941 14 C -0.146 4.146 15 C 0.049 3.951 16 O -0.386 6.386 17 C 0.115 3.885 18 H 0.080 0.920 19 C -0.183 4.183 20 C -0.168 4.168 21 C -0.158 4.158 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.007 1.007 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.345 0.655 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -16.012 1.917 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.321 5.321 12 C -0.058 4.058 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.027 4.027 16 O -0.305 6.305 17 C 0.057 3.943 18 H 0.098 0.902 19 C -0.201 4.201 20 C -0.205 4.205 21 C -0.195 4.195 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.011 0.989 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.167 0.833 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.552 -16.085 1.221 16.761 hybrid contribution 0.491 1.361 0.776 1.642 sum 5.043 -14.724 1.997 15.691 Atomic orbital electron populations 1.70116 1.07862 1.27757 1.51485 1.25983 0.95762 1.03412 0.94603 0.85359 0.79029 0.78583 0.77809 1.18533 1.20388 1.20272 1.21631 0.93520 0.92199 1.50828 0.92136 1.18912 0.94299 0.92343 0.94974 1.21824 0.95617 0.88446 0.98657 1.60900 1.19608 1.01154 1.50428 1.22946 0.94472 0.91097 0.97242 0.92279 1.23211 1.02387 0.96614 0.96198 1.23669 0.89708 0.93561 0.95795 1.88864 1.49668 1.53235 1.38765 1.22335 0.94236 0.87646 0.90066 0.90228 1.22391 0.96468 1.03379 0.97895 1.23085 1.03943 1.02432 0.91081 1.22853 0.99615 0.94302 1.02748 0.92733 0.99074 0.98875 0.92435 0.96267 0.83268 0.91289 0.89486 0.87576 0.90398 0.87486 0.87642 0.88123 0.88312 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.74 5.23 29.85 0.16 1.89 16 10 C 0.08 3.54 5.47 86.30 0.47 4.01 16 11 N -0.69 -24.81 5.43 -486.49 -2.64 -27.45 16 12 C 0.05 1.53 3.35 45.90 0.15 1.68 16 13 H 0.06 1.64 7.87 -2.38 -0.02 1.62 16 14 C -0.15 -3.80 6.80 31.90 0.22 -3.58 16 15 C 0.05 1.05 7.72 72.67 0.56 1.61 16 16 O -0.39 -10.47 11.14 -148.98 -1.66 -12.13 16 17 C 0.12 3.00 3.60 30.96 0.11 3.11 16 18 H 0.08 1.82 7.94 -2.38 -0.02 1.80 16 19 C -0.18 -4.87 3.97 -10.79 -0.04 -4.91 16 20 C -0.17 -3.72 10.18 30.60 0.31 -3.41 16 21 C -0.16 -3.52 10.20 30.59 0.31 -3.21 16 22 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 26 H 0.02 0.79 8.08 -2.39 -0.02 0.78 16 27 H 0.35 12.31 5.96 -89.70 -0.53 11.78 16 28 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 3.40 6.38 -2.39 -0.02 3.39 16 33 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.94 293.47 1.47 -63.47 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.51 Total: 20.05 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 2.95 Total: -33.33 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.35 Total: -84.46 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.66 Total: -12.13 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.94 1.47 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236173043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.472 kcal (2) G-P(sol) polarization free energy of solvation -64.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds