Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.01653 * 2 1 4 4 C 1.54269 * 110.03118 * 238.61236 * 2 1 3 5 5 H 1.09006 * 110.48498 * 145.64790 * 4 2 1 6 6 C 1.50697 * 110.48985 * 23.00294 * 4 2 1 7 7 H 1.08004 * 119.99853 * 354.67881 * 6 4 2 8 8 C 1.37878 * 120.00274 * 174.66952 * 6 4 2 9 9 N 1.31510 * 119.99698 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 119.99924 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47115 * 60.00834 * 10 8 6 12 12 H 1.48505 * 109.46829 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47718 * 300.00663 * 10 8 6 14 14 C 1.55014 * 104.13498 * 264.31052 * 4 2 1 15 15 C 1.54890 * 102.75720 * 322.05237 * 14 4 2 16 16 C 1.53874 * 110.03371 * 121.39572 * 2 1 3 17 17 C 1.53000 * 110.03130 * 238.57046 * 16 2 1 18 18 C 1.50704 * 110.02934 * 359.97438 * 16 2 1 19 19 N 1.34780 * 119.99833 * 290.80049 * 18 16 2 20 20 O 1.21280 * 120.00154 * 110.80241 * 18 16 2 21 21 H 1.09002 * 109.47245 * 54.31493 * 1 2 3 22 22 H 1.08994 * 109.46939 * 294.31362 * 1 2 3 23 23 H 1.09005 * 109.46995 * 174.31078 * 1 2 3 24 24 H 1.09003 * 109.46664 * 60.70368 * 3 2 1 25 25 H 1.08991 * 109.47093 * 180.69860 * 3 2 1 26 26 H 1.08998 * 109.47407 * 300.70366 * 3 2 1 27 27 H 0.97003 * 120.00031 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.74213 * 203.73197 * 14 4 2 29 29 H 1.09005 * 110.91503 * 80.44789 * 14 4 2 30 30 H 1.08997 * 110.48266 * 279.27042 * 15 14 4 31 31 H 1.08994 * 110.48381 * 156.63123 * 15 14 4 32 32 H 1.09003 * 109.47230 * 59.99792 * 17 16 2 33 33 H 1.08998 * 109.47194 * 179.97438 * 17 16 2 34 34 H 1.08994 * 109.47007 * 300.00032 * 17 16 2 35 35 H 0.96998 * 120.00305 * 354.78933 * 19 18 16 36 36 H 0.97002 * 119.99448 * 174.79028 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7549 -1.2373 5 1 2.9811 -0.2993 -1.5968 6 6 1.0183 -0.7739 -2.3276 7 1 0.0330 -0.3728 -2.1410 8 6 1.3246 -1.3031 -3.5634 9 7 2.5242 -1.7918 -3.7904 10 14 0.0350 -1.3273 -4.9146 11 1 -0.3926 0.0626 -5.2157 12 1 0.6102 -1.9443 -6.1368 13 1 -1.1378 -2.1197 -4.4656 14 6 2.3281 -2.1904 -0.7183 15 6 2.8875 -1.9404 0.7043 16 6 2.0571 -0.7531 1.2340 17 6 2.9409 0.1711 2.0740 18 6 0.9038 -1.2579 2.0623 19 7 0.1217 -0.3867 2.7302 20 8 0.6793 -2.4479 2.1279 21 1 -0.3634 0.5995 -0.8347 22 1 -0.3633 0.4231 0.9365 23 1 -0.3633 -1.0227 -0.1019 24 1 1.7056 1.9511 0.8963 25 1 3.1435 1.4273 -0.0125 26 1 1.6851 1.9586 -0.8836 27 1 2.7396 -2.1644 -4.6597 28 1 3.0675 -2.6936 -1.3413 29 1 1.4048 -2.7682 -0.6743 30 1 3.9440 -1.6764 0.6577 31 1 2.7402 -2.8191 1.3320 32 1 2.3581 1.0321 2.4016 33 1 3.3087 -0.3709 2.9452 34 1 3.7850 0.5108 1.4740 35 1 0.3452 0.5571 2.7397 36 1 -0.6647 -0.7037 3.2014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238233010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = -50.499775 kcal Electronic energy + Delta-G solvation = -17078.842250 eV Core-core repulsion = 14562.394687 eV Total energy + Delta-G solvation = -2516.447563 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38878 -37.14896 -33.64737 -32.71886 -31.26963 -30.28882 -26.84556 -26.01036 -23.62172 -22.96946 -21.20145 -19.27336 -17.98077 -16.61451 -15.98814 -15.66038 -14.73519 -14.65315 -13.97552 -13.69664 -13.15063 -12.79199 -12.59640 -12.12622 -12.09805 -11.70101 -11.45941 -11.09239 -10.94076 -10.71911 -10.49362 -10.27963 -10.10059 -9.79847 -9.69390 -9.46846 -9.20510 -9.10578 -8.75334 -8.59331 -8.27103 -5.93118 -3.93588 3.17096 3.35861 3.40842 3.43303 3.97516 4.50301 5.17546 5.24635 5.36867 5.43984 5.61903 5.89024 5.91384 6.04170 6.12790 6.26543 6.34915 6.37245 6.48602 6.60907 6.65124 6.74699 6.82795 7.04946 7.10325 7.13871 7.21973 7.35319 7.46948 7.71257 7.77357 7.95378 8.10537 8.54186 8.72775 9.08142 9.69683 11.17201 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.009731 C = 0.009580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.528194 B = 2876.682897 C = 2922.055736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C -0.131 4.131 4 C 0.063 3.937 5 H 0.037 0.963 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.062 3.938 9 N -0.891 5.891 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.137 4.137 18 C 0.542 3.458 19 N -0.861 5.861 20 O -0.546 6.546 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.258 0.742 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 6.191 10.709 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 C -0.188 4.188 4 C 0.044 3.956 5 H 0.055 0.945 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.082 4.082 17 C -0.194 4.194 18 C 0.328 3.672 19 N -0.425 5.425 20 O -0.422 6.422 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.227 0.773 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.805 5.301 10.486 11.777 hybrid contribution -0.956 0.260 -0.651 1.185 sum -1.761 5.561 9.835 11.435 Atomic orbital electron populations 1.22194 0.95368 1.02042 0.99944 1.21210 0.95236 0.94194 0.94363 1.21948 1.00466 0.96174 1.00252 1.19530 0.96180 0.90316 0.89562 0.94528 1.21385 0.98564 1.39290 0.95890 0.91693 1.24981 0.95036 0.95529 0.98359 1.69953 1.19497 1.40579 1.22939 0.86786 0.82154 0.78118 0.81675 1.20440 1.21471 1.20407 1.22476 0.99520 1.00434 0.91538 1.22438 0.97369 0.95662 0.99486 1.21573 0.93523 0.97782 0.95335 1.21999 0.99920 0.98379 0.99142 1.20565 0.83350 0.85818 0.77436 1.44084 1.30512 1.11541 1.56393 1.90669 1.72088 1.16466 1.62975 0.91952 0.94236 0.92607 0.94341 0.92931 0.92500 0.93195 0.91944 0.93168 0.92349 0.91876 0.92682 0.93368 0.91076 0.77262 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 5.94 37.16 0.22 -2.40 16 2 C -0.05 -0.95 0.86 -153.39 -0.13 -1.08 16 3 C -0.13 -2.15 7.20 37.16 0.27 -1.88 16 4 C 0.06 1.51 2.09 -90.05 -0.19 1.32 16 5 H 0.04 0.96 7.84 -51.93 -0.41 0.56 16 6 C -0.51 -13.71 7.76 -34.44 -0.27 -13.98 16 7 H 0.07 1.69 5.07 -52.48 -0.27 1.43 16 8 C 0.06 1.73 5.39 -17.82 -0.10 1.63 16 9 N -0.89 -25.75 12.73 55.43 0.71 -25.05 16 10 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C -0.10 -2.45 5.94 -24.67 -0.15 -2.59 16 15 C -0.11 -2.24 5.66 -25.08 -0.14 -2.38 16 16 C -0.08 -1.38 0.82 -154.54 -0.13 -1.51 16 17 C -0.14 -1.87 7.01 37.16 0.26 -1.61 16 18 C 0.54 9.57 5.13 -10.98 -0.06 9.51 16 19 N -0.86 -10.94 6.89 31.22 0.22 -10.72 16 20 O -0.55 -11.86 16.29 5.56 0.09 -11.77 16 21 H 0.06 1.23 6.55 -51.93 -0.34 0.89 16 22 H 0.04 0.60 5.26 -51.93 -0.27 0.33 16 23 H 0.05 1.21 7.50 -51.93 -0.39 0.83 16 24 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 25 H 0.05 0.83 6.68 -51.93 -0.35 0.49 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.06 1.61 7.86 -51.93 -0.41 1.21 16 29 H 0.05 1.31 8.06 -51.93 -0.42 0.89 16 30 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 31 H 0.06 1.30 6.94 -51.93 -0.36 0.94 16 32 H 0.05 0.62 5.80 -51.93 -0.30 0.32 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.96 6.70 -51.93 -0.35 0.62 16 35 H 0.40 4.04 7.17 -40.82 -0.29 3.75 16 36 H 0.39 4.36 8.93 -40.82 -0.36 3.99 16 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -30.93 270.14 -5.60 -36.53 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.26 Total: 5.43 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.41 Total: -14.97 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.92 Total: -35.77 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.93 -5.60 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.965 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds