Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.01653 * 2 1 4 4 C 1.54269 * 110.03118 * 238.61236 * 2 1 3 5 5 H 1.09006 * 110.48498 * 145.64790 * 4 2 1 6 6 C 1.50697 * 110.48985 * 23.00294 * 4 2 1 7 7 H 1.08004 * 119.99853 * 354.67881 * 6 4 2 8 8 C 1.37878 * 120.00274 * 174.66952 * 6 4 2 9 9 N 1.31510 * 119.99698 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 119.99924 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47115 * 60.00834 * 10 8 6 12 12 H 1.48505 * 109.46829 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47718 * 300.00663 * 10 8 6 14 14 C 1.55014 * 104.13498 * 264.31052 * 4 2 1 15 15 C 1.54890 * 102.75720 * 322.05237 * 14 4 2 16 16 C 1.53874 * 110.03371 * 121.39572 * 2 1 3 17 17 C 1.53000 * 110.03130 * 238.57046 * 16 2 1 18 18 C 1.50704 * 110.02934 * 359.97438 * 16 2 1 19 19 N 1.34780 * 119.99833 * 290.80049 * 18 16 2 20 20 O 1.21280 * 120.00154 * 110.80241 * 18 16 2 21 21 H 1.09002 * 109.47245 * 54.31493 * 1 2 3 22 22 H 1.08994 * 109.46939 * 294.31362 * 1 2 3 23 23 H 1.09005 * 109.46995 * 174.31078 * 1 2 3 24 24 H 1.09003 * 109.46664 * 60.70368 * 3 2 1 25 25 H 1.08991 * 109.47093 * 180.69860 * 3 2 1 26 26 H 1.08998 * 109.47407 * 300.70366 * 3 2 1 27 27 H 0.97003 * 120.00031 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.74213 * 203.73197 * 14 4 2 29 29 H 1.09005 * 110.91503 * 80.44789 * 14 4 2 30 30 H 1.08997 * 110.48266 * 279.27042 * 15 14 4 31 31 H 1.08994 * 110.48381 * 156.63123 * 15 14 4 32 32 H 1.09003 * 109.47230 * 59.99792 * 17 16 2 33 33 H 1.08998 * 109.47194 * 179.97438 * 17 16 2 34 34 H 1.08994 * 109.47007 * 300.00032 * 17 16 2 35 35 H 0.96998 * 120.00305 * 354.78933 * 19 18 16 36 36 H 0.97002 * 119.99448 * 174.79028 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7549 -1.2373 5 1 2.9811 -0.2993 -1.5968 6 6 1.0183 -0.7739 -2.3276 7 1 0.0330 -0.3728 -2.1410 8 6 1.3246 -1.3031 -3.5634 9 7 2.5242 -1.7918 -3.7904 10 14 0.0350 -1.3273 -4.9146 11 1 -0.3926 0.0626 -5.2157 12 1 0.6102 -1.9443 -6.1368 13 1 -1.1378 -2.1197 -4.4656 14 6 2.3281 -2.1904 -0.7183 15 6 2.8875 -1.9404 0.7043 16 6 2.0571 -0.7531 1.2340 17 6 2.9409 0.1711 2.0740 18 6 0.9038 -1.2579 2.0623 19 7 0.1217 -0.3867 2.7302 20 8 0.6793 -2.4479 2.1279 21 1 -0.3634 0.5995 -0.8347 22 1 -0.3633 0.4231 0.9365 23 1 -0.3633 -1.0227 -0.1019 24 1 1.7056 1.9511 0.8963 25 1 3.1435 1.4273 -0.0125 26 1 1.6851 1.9586 -0.8836 27 1 2.7396 -2.1644 -4.6597 28 1 3.0675 -2.6936 -1.3413 29 1 1.4048 -2.7682 -0.6743 30 1 3.9440 -1.6764 0.6577 31 1 2.7402 -2.8191 1.3320 32 1 2.3581 1.0321 2.4016 33 1 3.3087 -0.3709 2.9452 34 1 3.7850 0.5108 1.4740 35 1 0.3452 0.5571 2.7397 36 1 -0.6647 -0.7037 3.2014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238233010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = -72.311586 kcal Electronic energy + Delta-G solvation = -17079.788081 eV Core-core repulsion = 14562.394687 eV Total energy + Delta-G solvation = -2517.393394 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.86202 -38.69934 -35.18897 -34.47222 -32.83729 -31.93419 -28.32073 -27.78483 -25.03649 -24.78970 -22.76544 -20.97194 -19.42524 -18.03782 -17.81510 -17.15189 -16.58390 -16.14532 -15.60429 -15.28440 -14.51846 -14.36788 -14.19678 -13.78503 -13.58399 -13.34049 -13.07545 -12.86417 -12.45646 -12.33591 -12.24754 -11.91429 -11.82156 -11.45524 -11.37967 -11.14524 -10.78385 -10.59573 -10.54489 -10.37859 -10.21570 -8.06475 -6.11761 1.39361 1.41387 1.47449 1.79181 2.45641 2.75839 3.25180 3.76358 3.88252 4.01078 4.33232 4.55207 4.57762 4.66999 4.74854 4.83204 4.86364 4.98157 5.04976 5.15085 5.19524 5.27342 5.33986 5.36080 5.47358 5.58622 5.64221 5.73068 5.73536 5.94367 6.04017 6.05955 6.48921 6.58378 6.99328 7.49562 7.54369 9.03350 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.009731 C = 0.009580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.528194 B = 2876.682897 C = 2922.055736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 C -0.128 4.128 4 C 0.056 3.944 5 H 0.009 0.991 6 C -0.521 4.521 7 H 0.069 0.931 8 C 0.007 3.993 9 N -0.925 5.925 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.289 1.289 13 H -0.279 1.279 14 C -0.098 4.098 15 C -0.106 4.106 16 C -0.076 4.076 17 C -0.134 4.134 18 C 0.539 3.461 19 N -0.835 5.835 20 O -0.595 6.595 21 H 0.051 0.949 22 H 0.081 0.919 23 H 0.018 0.982 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.256 0.744 28 H 0.029 0.971 29 H 0.016 0.984 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 8.630 12.681 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 C -0.184 4.184 4 C 0.038 3.962 5 H 0.027 0.973 6 C -0.559 4.559 7 H 0.087 0.913 8 C -0.190 4.190 9 N -0.565 5.565 10 Si 0.769 3.231 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.079 4.079 17 C -0.191 4.191 18 C 0.325 3.675 19 N -0.400 5.400 20 O -0.475 6.475 21 H 0.070 0.930 22 H 0.100 0.900 23 H 0.037 0.963 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.549 7.803 12.482 14.801 hybrid contribution -0.747 -0.530 -1.253 1.552 sum -2.296 7.273 11.228 13.573 Atomic orbital electron populations 1.22132 0.95199 0.99829 1.01751 1.21093 0.95325 0.95757 0.92533 1.21923 1.00820 0.93863 1.01844 1.19490 0.94602 0.90691 0.91455 0.97265 1.21846 0.99283 1.38113 0.96658 0.91320 1.25752 0.96786 0.95686 1.00816 1.70092 1.21261 1.41916 1.23211 0.85855 0.79703 0.78572 0.78999 1.19058 1.21512 1.20444 1.22271 0.97165 0.99978 0.94177 1.22353 0.98627 0.97037 0.96394 1.21486 0.93988 0.97067 0.95371 1.22022 0.99675 0.98629 0.98778 1.20588 0.83677 0.85555 0.77663 1.43788 1.29753 1.11866 1.54589 1.90662 1.73234 1.18692 1.64893 0.92960 0.90047 0.96284 0.89730 0.92430 0.93981 0.93544 0.95174 0.96481 0.90801 0.92713 0.89156 0.92132 0.90692 0.75121 0.76320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 5.94 71.98 0.43 -4.34 16 2 C -0.05 -1.71 0.86 -51.46 -0.04 -1.75 16 3 C -0.13 -3.72 7.20 71.98 0.52 -3.21 16 4 C 0.06 2.77 2.09 -10.42 -0.02 2.75 16 5 H 0.01 0.50 7.84 -2.38 -0.02 0.48 16 6 C -0.52 -28.51 7.76 25.60 0.20 -28.31 16 7 H 0.07 3.63 5.07 -2.91 -0.01 3.61 16 8 C 0.01 0.42 5.39 84.66 0.46 0.87 16 9 N -0.92 -55.56 12.73 21.45 0.27 -55.29 16 10 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 C -0.10 -4.94 5.94 31.93 0.19 -4.75 16 15 C -0.11 -4.28 5.66 31.67 0.18 -4.10 16 16 C -0.08 -2.50 0.82 -52.20 -0.04 -2.54 16 17 C -0.13 -3.04 7.01 71.98 0.50 -2.53 16 18 C 0.54 17.83 5.13 87.66 0.45 18.28 16 19 N -0.83 -17.74 6.89 -173.53 -1.20 -18.93 16 20 O -0.59 -25.64 16.29 -3.03 -0.05 -25.69 16 21 H 0.05 1.98 6.55 -2.39 -0.02 1.96 16 22 H 0.08 2.18 5.26 -2.39 -0.01 2.17 16 23 H 0.02 0.80 7.50 -2.38 -0.02 0.78 16 24 H 0.08 1.69 6.78 -2.39 -0.02 1.68 16 25 H 0.06 1.64 6.68 -2.39 -0.02 1.62 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.03 1.65 7.86 -2.39 -0.02 1.63 16 29 H 0.02 0.93 8.06 -2.38 -0.02 0.91 16 30 H 0.07 2.70 7.84 -2.39 -0.02 2.68 16 31 H 0.05 2.29 6.94 -2.39 -0.02 2.27 16 32 H 0.09 1.42 5.80 -2.39 -0.01 1.41 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.70 6.70 -2.39 -0.02 1.68 16 35 H 0.42 5.96 7.17 -92.71 -0.67 5.29 16 36 H 0.41 7.39 8.93 -92.71 -0.83 6.57 16 Total: -1.00 -71.53 270.14 3.47 -68.05 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.40 Total: 14.52 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.81 Total: -29.64 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -0.92 Total: -74.22 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.53 3.47 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.258 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds