Wall clock time and date at job start Mon Mar 30 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47373 * 2 1 4 4 C 1.50704 * 109.46859 * 239.99958 * 2 1 3 5 5 H 1.08000 * 120.00114 * 239.99922 * 4 2 1 6 6 C 1.37878 * 119.99667 * 60.00134 * 4 2 1 7 7 N 1.31511 * 120.00399 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46876 * 119.99894 * 8 6 4 11 11 H 1.48496 * 109.47113 * 239.99911 * 8 6 4 12 12 N 1.46498 * 109.47149 * 120.00383 * 2 1 3 13 13 C 1.34783 * 119.99723 * 299.99294 * 12 2 1 14 14 O 1.21281 * 120.00146 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.54961 * 110.92464 * 66.54433 * 15 13 12 17 17 C 1.54270 * 104.16191 * 156.29299 * 16 15 13 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 1.09005 * 109.46634 * 299.99980 * 1 2 3 21 21 H 1.08991 * 109.47379 * 59.99765 * 1 2 3 22 22 H 1.08995 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46971 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47159 * 300.00271 * 3 2 1 25 25 H 1.09003 * 109.46817 * 60.00064 * 3 2 1 26 26 H 0.96998 * 120.00324 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00551 * 120.00295 * 12 2 1 28 28 H 1.09001 * 110.67717 * 303.23484 * 15 13 12 29 29 H 1.08997 * 110.47708 * 37.63897 * 16 15 13 30 30 H 1.09002 * 110.53308 * 274.97289 * 16 15 13 31 31 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 32 32 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 33 33 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 34 34 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 35 35 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 36 36 H 1.09001 * 110.48482 * 264.93365 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1482 -2.2857 -3.6038 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6928 -0.2301 2.4203 14 8 0.9953 0.7557 2.5316 15 6 2.1956 -0.9403 3.6507 16 6 3.7358 -0.8182 3.7696 17 6 4.0150 -1.0146 5.2740 18 6 2.7185 -0.6435 6.0149 19 6 1.6958 -0.2335 4.9351 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 0.7086 1.1613 -3.4843 27 1 2.5761 -1.4793 1.1071 28 1 1.8913 -1.9869 3.6424 29 1 4.0662 0.1689 3.4460 30 1 4.2273 -1.5964 3.1856 31 1 4.8270 -0.3604 5.5917 32 1 4.2742 -2.0545 5.4729 33 1 2.3480 -1.5035 6.5727 34 1 2.9013 0.1903 6.6928 35 1 0.6989 -0.5852 5.2008 36 1 1.6964 0.8481 4.8003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259549430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:21 Heat of formation + Delta-G solvation = -77.814529 kcal Electronic energy + Delta-G solvation = -16244.540974 eV Core-core repulsion = 13726.908954 eV Total energy + Delta-G solvation = -2517.632019 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00091 -38.38965 -36.90195 -34.26155 -31.92140 -29.60491 -29.42741 -27.64033 -27.32619 -23.65889 -21.53689 -20.93568 -20.19459 -18.88085 -17.55220 -17.04177 -16.55473 -15.99818 -15.48655 -15.25905 -14.41788 -14.23964 -14.17023 -13.89492 -13.44274 -13.03667 -12.96854 -12.81205 -12.40651 -12.36575 -12.10553 -12.05460 -11.96201 -11.90393 -11.75907 -11.63162 -11.20760 -10.95864 -10.52954 -10.19046 -9.61380 -8.07669 -6.27403 1.44899 1.47007 1.57578 1.94237 2.38770 2.75631 3.17758 3.62582 3.74978 3.93694 4.38811 4.52400 4.56800 4.64840 4.67538 4.71314 4.85116 4.89076 4.99144 5.03690 5.14641 5.22103 5.23516 5.29949 5.33535 5.43179 5.53994 5.54754 5.56798 5.77445 5.94391 5.96720 6.27480 6.76804 7.14446 7.40105 7.69333 8.93302 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048290 B = 0.006853 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.696276 B = 4084.579573 C = 4393.987215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.287 3.713 3 C -0.132 4.132 4 C -0.538 4.538 5 H 0.068 0.932 6 C 0.021 3.979 7 N -0.907 5.907 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.503 3.497 14 O -0.590 6.590 15 C -0.112 4.112 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.106 4.106 20 H 0.026 0.974 21 H 0.065 0.935 22 H 0.022 0.978 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.263 0.737 27 H 0.400 0.600 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.889 -6.346 12.282 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.202 3.798 3 C -0.191 4.191 4 C -0.576 4.576 5 H 0.086 0.914 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.290 3.710 14 O -0.472 6.472 15 C -0.134 4.134 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.144 4.144 20 H 0.045 0.955 21 H 0.083 0.917 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.235 0.765 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.323 -5.540 12.196 14.414 hybrid contribution 0.143 -0.279 -1.238 1.277 sum 5.465 -5.819 10.958 13.558 Atomic orbital electron populations 1.21921 0.98524 0.98483 1.00297 1.17915 0.90507 0.89452 0.81924 1.21906 0.97694 0.99235 1.00233 1.21470 1.32542 1.12882 0.90711 0.91354 1.25634 0.94886 0.95553 1.01807 1.69990 1.36848 1.23658 1.24026 0.85390 0.77956 0.78581 0.78925 1.18683 1.20918 1.20932 1.46440 1.51960 1.31285 1.05782 1.21209 0.79705 0.84406 0.85649 1.90568 1.40470 1.28753 1.87430 1.22398 0.98165 1.01045 0.91746 1.22339 0.92067 1.01905 0.98544 1.22117 0.97703 1.02774 0.92812 1.22137 0.94493 1.01867 0.97078 1.22194 0.99289 0.99821 0.93121 0.95525 0.91673 0.95899 0.95975 0.91707 0.95592 0.92784 0.76539 0.86595 0.93254 0.89612 0.91018 0.89715 0.90097 0.91218 0.91602 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 8.18 71.98 0.59 -6.47 16 2 C 0.29 14.50 0.78 2.86 0.00 14.50 16 3 C -0.13 -6.98 8.18 71.98 0.59 -6.39 16 4 C -0.54 -27.98 8.18 25.60 0.21 -27.77 16 5 H 0.07 3.36 7.60 -2.91 -0.02 3.34 16 6 C 0.02 1.13 5.15 84.66 0.44 1.56 16 7 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.71 -29.46 5.10 -426.32 -2.17 -31.64 16 13 C 0.50 20.05 6.57 87.66 0.58 20.63 16 14 O -0.59 -28.50 11.94 -3.03 -0.04 -28.54 16 15 C -0.11 -3.15 3.28 -10.22 -0.03 -3.19 16 16 C -0.11 -2.59 6.28 31.70 0.20 -2.39 16 17 C -0.12 -2.05 6.80 31.32 0.21 -1.84 16 18 C -0.12 -2.21 6.80 31.32 0.21 -2.00 16 19 C -0.11 -2.82 5.90 31.67 0.19 -2.64 16 20 H 0.03 1.40 6.17 -2.38 -0.01 1.39 16 21 H 0.06 3.71 6.07 -2.39 -0.01 3.69 16 22 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 3.69 6.07 -2.38 -0.01 3.67 16 25 H 0.03 1.37 6.17 -2.39 -0.01 1.35 16 26 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.40 14.36 8.32 -92.71 -0.77 13.58 16 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.05 1.36 8.05 -2.39 -0.02 1.34 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.64 7.44 -2.39 -0.02 1.62 16 Total: -1.00 -63.09 280.80 3.48 -59.61 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.29 Total: 23.20 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.18 Total: -16.00 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -1.97 Total: -81.96 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -63.09 3.48 -59.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259549430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.209 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds