Wall clock time and date at job start Mon Mar 30 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 C 1.53001 * 109.47126 * 240.00165 * 2 1 3 5 5 C 1.50700 * 109.47371 * 120.00227 * 2 1 3 6 6 O 1.21286 * 119.99835 * 6.19725 * 5 2 1 7 7 N 1.34767 * 120.00095 * 186.19570 * 5 2 1 8 8 C 1.47428 * 125.65293 * 5.38667 * 7 5 2 9 9 C 1.54905 * 104.83270 * 204.09178 * 8 7 5 10 10 C 1.55151 * 101.58367 * 322.98528 * 9 8 7 11 11 H 1.09002 * 110.72252 * 277.14462 * 10 9 8 12 12 C 1.50701 * 110.72270 * 153.86650 * 10 9 8 13 13 H 1.08000 * 120.00134 * 271.48475 * 12 10 9 14 14 C 1.37877 * 119.99735 * 91.48523 * 12 10 9 15 15 N 1.31520 * 119.99708 * 184.95200 * 14 12 10 16 16 Si 1.86796 * 120.00204 * 4.94673 * 14 12 10 17 17 H 1.48505 * 109.47153 * 94.90343 * 16 14 12 18 18 H 1.48503 * 109.47072 * 214.90348 * 16 14 12 19 19 H 1.48504 * 109.47424 * 334.90062 * 16 14 12 20 20 C 1.47022 * 125.64699 * 185.33805 * 7 5 2 21 21 H 1.08994 * 109.47137 * 299.99755 * 1 2 3 22 22 H 1.09000 * 109.47032 * 59.99861 * 1 2 3 23 23 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47336 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46881 * 300.00491 * 3 2 1 26 26 H 1.09004 * 109.46850 * 59.99495 * 3 2 1 27 27 H 1.08997 * 109.47065 * 294.87255 * 4 2 1 28 28 H 1.09002 * 109.46795 * 54.87098 * 4 2 1 29 29 H 1.09003 * 109.47462 * 174.87026 * 4 2 1 30 30 H 1.09008 * 110.35669 * 322.92488 * 8 7 5 31 31 H 1.08995 * 110.36888 * 85.13756 * 8 7 5 32 32 H 1.09006 * 111.00196 * 204.90874 * 9 8 7 33 33 H 1.09008 * 111.00608 * 81.06156 * 9 8 7 34 34 H 0.96995 * 119.99617 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.88307 * 59.56074 * 20 7 5 36 36 H 1.08997 * 110.01487 * 298.46383 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2501 -1.2686 1.9703 7 7 3.3510 -0.7256 1.5086 8 6 4.3949 0.0010 0.7631 9 6 5.6996 -0.7879 1.0370 10 6 5.5050 -1.2074 2.5179 11 1 5.7970 -0.3997 3.1892 12 6 6.2808 -2.4629 2.8229 13 1 5.8265 -3.4300 2.6657 14 6 7.5705 -2.3768 3.3026 15 7 8.2817 -3.4694 3.4765 16 14 8.3079 -0.7084 3.7054 17 1 8.1264 -0.4231 5.1515 18 1 9.7569 -0.7162 3.3804 19 1 7.6266 0.3403 2.9046 20 6 3.9865 -1.4688 2.6065 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.7536 -1.7719 -1.2046 28 1 1.6036 -0.2631 -2.1368 29 1 3.1262 -0.6424 -1.2965 30 1 4.1686 0.0015 -0.3032 31 1 4.4829 1.0228 1.1320 32 1 6.5744 -0.1475 0.9239 33 1 5.7710 -1.6619 0.3894 34 1 9.1892 -3.4088 3.8137 35 1 3.7869 -2.5347 2.4969 36 1 3.6052 -1.1169 3.5650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:30 Heat of formation + Delta-G solvation = -43.775328 kcal Electronic energy + Delta-G solvation = -16314.844673 eV Core-core repulsion = 13798.688704 eV Total energy + Delta-G solvation = -2516.155969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09297 -37.08089 -35.50484 -32.91650 -30.80875 -28.76696 -27.38199 -27.08241 -25.33436 -23.11936 -21.11524 -19.51065 -18.52981 -17.28037 -16.28033 -15.55838 -15.08469 -14.45804 -14.30327 -13.74621 -13.42755 -13.04112 -12.72652 -12.50002 -12.30021 -12.17334 -12.01827 -11.78479 -11.61530 -11.43088 -11.04205 -10.92151 -10.74962 -10.68934 -10.21830 -9.81842 -9.74702 -9.23333 -9.18127 -8.61662 -8.08182 -6.16355 -4.16485 3.01311 3.21737 3.30678 3.31555 3.48574 4.33483 4.59673 4.80232 4.91073 5.08318 5.23288 5.31342 5.53115 5.55886 5.61318 5.69329 5.75345 5.78809 5.85139 5.87379 6.01155 6.12331 6.16653 6.23610 6.34001 6.45869 6.62898 6.68993 6.80782 7.00697 7.25704 7.63457 8.05552 8.42608 8.58757 8.88432 9.45060 10.96353 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047799 B = 0.007182 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.641256 B = 3897.793850 C = 4066.310422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 C -0.156 4.156 4 C -0.144 4.144 5 C 0.530 3.470 6 O -0.552 6.552 7 N -0.610 5.610 8 C 0.088 3.912 9 C -0.135 4.135 10 C 0.009 3.991 11 H 0.044 0.956 12 C -0.510 4.510 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.261 1.261 20 C 0.116 3.884 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.066 0.934 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 10.287 -9.070 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.213 4.213 4 C -0.201 4.201 5 C 0.318 3.682 6 O -0.431 6.431 7 N -0.342 5.342 8 C -0.035 4.035 9 C -0.174 4.174 10 C -0.010 4.010 11 H 0.062 0.938 12 C -0.548 4.548 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.532 5.532 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.006 4.006 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.262 9.903 -8.615 16.064 hybrid contribution 0.601 0.814 0.292 1.053 sum -8.661 10.716 -8.323 16.098 Atomic orbital electron populations 1.21631 0.92321 1.02703 1.01516 1.20734 0.97545 0.96387 0.94046 1.22197 1.02878 0.93964 1.02302 1.21951 1.01917 1.00587 0.95640 1.20182 0.80869 0.80590 0.86529 1.90653 1.54750 1.46866 1.50786 1.48635 1.05524 1.48035 1.32055 1.22764 0.89168 0.95607 0.95951 1.23193 0.94025 0.99051 1.01091 1.20211 0.90486 0.97939 0.92376 0.93795 1.20888 0.98053 0.91924 1.43923 0.90596 1.25046 0.96799 0.96415 0.94697 1.69909 1.10176 1.27794 1.45370 0.86855 0.78422 0.85106 0.79226 1.20324 1.21330 1.18574 1.22232 0.94420 0.95981 0.87942 0.92271 0.92375 0.91927 0.90617 0.91822 0.92376 0.92122 0.91679 0.91314 0.90791 0.92049 0.91500 0.90737 0.92509 0.91555 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.79 37.16 0.29 -1.23 16 2 C -0.08 -1.11 0.75 -155.66 -0.12 -1.23 16 3 C -0.16 -1.73 8.13 37.16 0.30 -1.43 16 4 C -0.14 -1.66 8.31 37.16 0.31 -1.35 16 5 C 0.53 9.55 6.58 -10.99 -0.07 9.48 16 6 O -0.55 -11.93 16.32 5.55 0.09 -11.84 16 7 N -0.61 -11.20 3.32 -170.52 -0.57 -11.77 16 8 C 0.09 1.37 4.88 -2.53 -0.01 1.36 16 9 C -0.14 -2.55 6.49 -24.59 -0.16 -2.71 16 10 C 0.01 0.21 2.28 -89.94 -0.21 0.01 16 11 H 0.04 0.98 5.60 -51.93 -0.29 0.69 16 12 C -0.51 -13.70 8.90 -34.44 -0.31 -14.01 16 13 H 0.08 2.25 7.82 -52.49 -0.41 1.84 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 16 Si 0.88 20.41 27.27 -169.99 -4.64 15.77 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.26 -5.63 6.09 56.52 0.34 -5.29 16 20 C 0.12 2.46 6.46 -3.06 -0.02 2.44 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 24 H 0.08 0.83 4.09 -51.93 -0.21 0.62 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.79 5.31 -51.93 -0.28 0.52 16 30 H 0.07 0.97 4.18 -51.92 -0.22 0.75 16 31 H 0.06 0.88 7.34 -51.93 -0.38 0.50 16 32 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 33 H 0.07 1.46 8.04 -51.92 -0.42 1.04 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.52 7.66 -51.93 -0.40 1.12 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -30.62 278.34 -5.81 -36.43 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.57 Total: -0.29 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.09 Total: -6.76 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.21 Total: -37.51 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.64 Total: 15.77 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.62 -5.81 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.348 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds