Wall clock time and date at job start Mon Mar 30 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 C 1.53001 * 109.47126 * 240.00165 * 2 1 3 5 5 C 1.50700 * 109.47371 * 120.00227 * 2 1 3 6 6 O 1.21286 * 119.99835 * 6.19725 * 5 2 1 7 7 N 1.34767 * 120.00095 * 186.19570 * 5 2 1 8 8 C 1.47428 * 125.65293 * 5.38667 * 7 5 2 9 9 C 1.54905 * 104.83270 * 204.09178 * 8 7 5 10 10 C 1.55151 * 101.58367 * 322.98528 * 9 8 7 11 11 H 1.09002 * 110.72252 * 277.14462 * 10 9 8 12 12 C 1.50701 * 110.72270 * 153.86650 * 10 9 8 13 13 H 1.08000 * 120.00134 * 271.48475 * 12 10 9 14 14 C 1.37877 * 119.99735 * 91.48523 * 12 10 9 15 15 N 1.31520 * 119.99708 * 184.95200 * 14 12 10 16 16 Si 1.86796 * 120.00204 * 4.94673 * 14 12 10 17 17 H 1.48505 * 109.47153 * 94.90343 * 16 14 12 18 18 H 1.48503 * 109.47072 * 214.90348 * 16 14 12 19 19 H 1.48504 * 109.47424 * 334.90062 * 16 14 12 20 20 C 1.47022 * 125.64699 * 185.33805 * 7 5 2 21 21 H 1.08994 * 109.47137 * 299.99755 * 1 2 3 22 22 H 1.09000 * 109.47032 * 59.99861 * 1 2 3 23 23 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47336 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46881 * 300.00491 * 3 2 1 26 26 H 1.09004 * 109.46850 * 59.99495 * 3 2 1 27 27 H 1.08997 * 109.47065 * 294.87255 * 4 2 1 28 28 H 1.09002 * 109.46795 * 54.87098 * 4 2 1 29 29 H 1.09003 * 109.47462 * 174.87026 * 4 2 1 30 30 H 1.09008 * 110.35669 * 322.92488 * 8 7 5 31 31 H 1.08995 * 110.36888 * 85.13756 * 8 7 5 32 32 H 1.09006 * 111.00196 * 204.90874 * 9 8 7 33 33 H 1.09008 * 111.00608 * 81.06156 * 9 8 7 34 34 H 0.96995 * 119.99617 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.88307 * 59.56074 * 20 7 5 36 36 H 1.08997 * 110.01487 * 298.46383 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2501 -1.2686 1.9703 7 7 3.3510 -0.7256 1.5086 8 6 4.3949 0.0010 0.7631 9 6 5.6996 -0.7879 1.0370 10 6 5.5050 -1.2074 2.5179 11 1 5.7970 -0.3997 3.1892 12 6 6.2808 -2.4629 2.8229 13 1 5.8265 -3.4300 2.6657 14 6 7.5705 -2.3768 3.3026 15 7 8.2817 -3.4694 3.4765 16 14 8.3079 -0.7084 3.7054 17 1 8.1264 -0.4231 5.1515 18 1 9.7569 -0.7162 3.3804 19 1 7.6266 0.3403 2.9046 20 6 3.9865 -1.4688 2.6065 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.7536 -1.7719 -1.2046 28 1 1.6036 -0.2631 -2.1368 29 1 3.1262 -0.6424 -1.2965 30 1 4.1686 0.0015 -0.3032 31 1 4.4829 1.0228 1.1320 32 1 6.5744 -0.1475 0.9239 33 1 5.7710 -1.6619 0.3894 34 1 9.1892 -3.4088 3.8137 35 1 3.7869 -2.5347 2.4969 36 1 3.6052 -1.1169 3.5650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:30 Heat of formation + Delta-G solvation = -64.097348 kcal Electronic energy + Delta-G solvation = -16315.725902 eV Core-core repulsion = 13798.688704 eV Total energy + Delta-G solvation = -2517.037198 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47170 -38.62864 -36.70107 -34.88688 -32.55066 -30.27885 -28.24322 -28.15875 -27.07601 -24.66675 -22.41078 -21.26443 -19.88281 -19.24174 -17.61416 -17.00956 -16.47664 -16.21405 -15.69082 -14.99090 -14.70540 -14.58083 -14.40855 -13.82854 -13.65806 -13.37486 -13.11986 -13.03564 -12.87419 -12.73015 -12.62336 -12.41234 -11.96305 -11.88356 -11.80873 -11.65460 -11.34017 -11.09114 -10.69313 -10.64622 -9.60439 -8.29291 -6.35279 1.38931 1.40996 1.52435 1.62444 2.08208 2.36813 3.04226 3.45214 3.83197 3.90604 3.95031 4.09759 4.27046 4.33980 4.41788 4.52015 4.68803 4.71754 4.76560 4.83588 4.93636 4.95987 5.00306 5.04969 5.10473 5.24035 5.25732 5.31108 5.37148 5.41397 5.56788 5.65778 6.28330 6.64567 6.69796 7.15688 7.29832 8.87533 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047799 B = 0.007182 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.641256 B = 3897.793850 C = 4066.310422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.599 6.599 7 N -0.613 5.613 8 C 0.094 3.906 9 C -0.131 4.131 10 C 0.007 3.993 11 H 0.054 0.946 12 C -0.517 4.517 13 H 0.024 0.976 14 C 0.012 3.988 15 N -0.950 5.950 16 Si 0.947 3.053 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.224 1.224 20 C 0.121 3.879 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.032 0.968 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 14.141 -11.159 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.082 4.082 3 C -0.210 4.210 4 C -0.199 4.199 5 C 0.311 3.689 6 O -0.481 6.481 7 N -0.345 5.345 8 C -0.027 4.027 9 C -0.170 4.170 10 C -0.013 4.013 11 H 0.072 0.928 12 C -0.555 4.555 13 H 0.042 0.958 14 C -0.186 4.186 15 N -0.589 5.589 16 Si 0.770 3.230 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.146 1.146 20 C -0.002 4.002 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.478 13.781 -10.739 19.877 hybrid contribution 0.579 -0.533 0.953 1.236 sum -8.899 13.248 -9.786 18.721 Atomic orbital electron populations 1.21654 0.91723 1.01918 1.02734 1.20840 0.98005 0.97556 0.91768 1.22210 1.03131 0.91940 1.03687 1.21978 1.02225 0.99679 0.95987 1.21318 0.80125 0.79963 0.87537 1.90626 1.55861 1.48880 1.52706 1.48724 1.06426 1.47907 1.31418 1.22966 0.86126 0.95747 0.97877 1.23064 0.96858 0.99431 0.97610 1.20145 0.90055 0.95850 0.95211 0.92784 1.21086 0.98633 0.91995 1.43761 0.95757 1.26006 0.97179 1.00964 0.94413 1.70075 1.10807 1.30842 1.47189 0.85742 0.77585 0.80361 0.79357 1.20213 1.21138 1.14618 1.21888 0.94494 0.94613 0.89188 0.93430 0.88702 0.93808 0.90122 0.88516 0.93011 0.93920 0.88144 0.91024 0.87287 0.89177 0.89546 0.92250 0.92404 0.94963 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 7.79 71.98 0.56 -2.15 16 2 C -0.08 -1.85 0.75 -52.93 -0.04 -1.89 16 3 C -0.15 -2.63 8.13 71.98 0.59 -2.04 16 4 C -0.14 -2.76 8.31 71.98 0.60 -2.16 16 5 C 0.52 18.30 6.58 87.66 0.58 18.87 16 6 O -0.60 -26.49 16.32 -3.05 -0.05 -26.54 16 7 N -0.61 -21.77 3.32 -811.79 -2.70 -24.47 16 8 C 0.09 2.58 4.88 86.85 0.42 3.00 16 9 C -0.13 -4.64 6.49 31.98 0.21 -4.43 16 10 C 0.01 0.30 2.28 -10.35 -0.02 0.28 16 11 H 0.05 2.28 5.60 -2.39 -0.01 2.27 16 12 C -0.52 -28.85 8.90 25.60 0.23 -28.62 16 13 H 0.02 1.55 7.82 -2.91 -0.02 1.53 16 14 C 0.01 0.66 5.47 84.65 0.46 1.12 16 15 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 16 Si 0.95 41.31 27.27 68.60 1.87 43.18 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.22 -8.34 6.09 99.48 0.61 -7.74 16 20 C 0.12 5.28 6.46 86.73 0.56 5.84 16 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.12 8.03 -2.39 -0.02 1.10 16 24 H 0.08 1.30 4.09 -2.39 -0.01 1.29 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.34 5.31 -2.39 -0.01 1.33 16 30 H 0.11 2.30 4.18 -2.38 -0.01 2.29 16 31 H 0.09 2.06 7.34 -2.39 -0.02 2.05 16 32 H 0.09 2.74 7.75 -2.38 -0.02 2.72 16 33 H 0.06 2.26 8.04 -2.38 -0.02 2.25 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.03 1.58 7.66 -2.39 -0.02 1.57 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -71.58 278.34 4.51 -67.06 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.95 Total: 11.03 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.14 Total: -12.18 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.40 Total: -82.55 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.87 Total: 43.18 kcal Total: -71.58 4.51 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.967 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds