Wall clock time and date at job start Mon Mar 30 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46768 * 2 1 4 4 C 1.52994 * 109.46929 * 120.00013 * 2 1 3 5 5 H 1.08999 * 109.47658 * 54.31118 * 4 2 1 6 6 C 1.50706 * 109.47031 * 174.31148 * 4 2 1 7 7 H 1.08004 * 119.99939 * 114.37290 * 6 4 2 8 8 C 1.37875 * 119.99800 * 294.38163 * 6 4 2 9 9 N 1.31515 * 120.00322 * 1.49061 * 8 6 4 10 10 Si 1.86798 * 120.00087 * 181.49071 * 8 6 4 11 11 H 1.48499 * 109.47065 * 59.99566 * 10 8 6 12 12 H 1.48495 * 109.47479 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47060 * 299.99815 * 10 8 6 14 14 C 1.53003 * 109.47325 * 294.30711 * 4 2 1 15 15 H 1.09000 * 110.43235 * 303.16088 * 14 4 2 16 16 C 1.54633 * 110.48151 * 65.69664 * 14 4 2 17 17 C 1.54481 * 101.75980 * 143.61135 * 16 14 4 18 18 N 1.46763 * 105.47676 * 334.58428 * 17 16 14 19 19 C 1.46495 * 124.35045 * 197.02228 * 18 17 16 20 20 C 1.34420 * 111.30052 * 17.28035 * 18 17 16 21 21 O 1.21278 * 124.94487 * 179.30546 * 20 18 17 22 22 H 1.08998 * 109.47060 * 311.91036 * 1 2 3 23 23 H 1.09002 * 109.46774 * 71.90823 * 1 2 3 24 24 H 1.09003 * 109.46830 * 191.90605 * 1 2 3 25 25 H 1.08999 * 109.47100 * 239.99973 * 2 1 3 26 26 H 1.09003 * 109.46666 * 182.42996 * 3 2 1 27 27 H 1.09000 * 109.47236 * 302.41875 * 3 2 1 28 28 H 1.08999 * 109.47333 * 62.42413 * 3 2 1 29 29 H 0.97001 * 120.00349 * 180.02562 * 9 8 6 30 30 H 1.08995 * 110.97042 * 25.49318 * 16 14 4 31 31 H 1.09000 * 111.00044 * 261.74030 * 16 14 4 32 32 H 1.09005 * 110.24434 * 215.58534 * 17 16 14 33 33 H 1.09002 * 110.24947 * 93.58658 * 17 16 14 34 34 H 1.08998 * 109.47451 * 89.99776 * 19 18 17 35 35 H 1.08998 * 109.46988 * 329.99401 * 19 18 17 36 36 H 1.08997 * 109.47132 * 209.99512 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5959 -1.7153 1.3017 6 6 3.5405 -0.8444 1.1808 7 1 4.1583 -0.3221 1.8963 8 6 4.1244 -1.6237 0.2048 9 7 3.3735 -2.2360 -0.6845 10 14 5.9821 -1.8098 0.1454 11 1 6.4604 -2.4093 1.4170 12 1 6.3552 -2.6928 -0.9887 13 1 6.6077 -0.4756 -0.0389 14 6 1.6502 0.0779 2.4944 15 1 2.0401 1.0938 2.4320 16 6 0.1135 0.0975 2.6655 17 6 -0.0332 0.0269 4.2017 18 7 1.1902 -0.6260 4.6823 19 6 1.3414 -1.2221 6.0120 20 6 2.1561 -0.6018 3.7477 21 8 3.2700 -1.0604 3.8879 22 1 -0.3633 0.6864 0.7648 23 1 -0.3633 0.3191 -0.9769 24 1 -0.3633 -1.0056 0.2120 25 1 1.8934 -0.5138 -0.8900 26 1 3.1291 1.4428 -0.0436 27 1 1.6416 1.9687 -0.8675 28 1 1.7126 1.9436 0.9109 29 1 3.7843 -2.7846 -1.3710 30 1 -0.3431 -0.7703 2.1898 31 1 -0.3112 1.0224 2.2753 32 1 -0.9075 -0.5660 4.4703 33 1 -0.1142 1.0304 4.6195 34 1 1.0422 -2.2696 5.9767 35 1 0.7116 -0.6879 6.7233 36 1 2.3831 -1.1522 6.3251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:58 Heat of formation + Delta-G solvation = -33.833804 kcal Electronic energy + Delta-G solvation = -16768.470192 eV Core-core repulsion = 14252.745319 eV Total energy + Delta-G solvation = -2515.724872 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91448 -36.36444 -35.42749 -32.10825 -31.35814 -28.44694 -26.58990 -26.07503 -25.31110 -22.69852 -20.78315 -19.11228 -18.03355 -16.34306 -15.96467 -15.60671 -14.70812 -14.29363 -13.80208 -13.31780 -13.17597 -12.78923 -12.47624 -12.32835 -12.09651 -11.94294 -11.70669 -11.39012 -11.26601 -10.78778 -10.74572 -10.44706 -10.29026 -9.90931 -9.61862 -9.45449 -9.08761 -8.88223 -8.35032 -8.16229 -8.10742 -5.81534 -3.80034 3.47028 3.48677 3.50156 3.57690 3.60881 4.63059 5.06847 5.08995 5.26915 5.50064 5.53873 5.67904 5.71400 5.85960 5.96308 6.05061 6.15878 6.30122 6.31883 6.40110 6.47219 6.61014 6.72221 6.79000 6.97197 6.97603 7.09857 7.43548 7.55532 7.72573 7.88157 7.99535 8.23824 8.58915 9.07541 9.23268 9.81380 11.26624 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.011871 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.454340 B = 2358.042545 C = 3164.059691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.074 3.926 5 H 0.029 0.971 6 C -0.485 4.485 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.900 5.900 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.280 1.280 14 C -0.110 4.110 15 H 0.096 0.904 16 C -0.134 4.134 17 C 0.104 3.896 18 N -0.643 5.643 19 C 0.101 3.899 20 C 0.522 3.478 21 O -0.503 6.503 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 5.527 7.159 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.108 4.108 3 C -0.188 4.188 4 C 0.056 3.944 5 H 0.047 0.953 6 C -0.523 4.523 7 H 0.081 0.919 8 C -0.141 4.141 9 N -0.540 5.540 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.205 1.205 14 C -0.132 4.132 15 H 0.114 0.886 16 C -0.171 4.171 17 C -0.020 4.020 18 N -0.381 5.381 19 C -0.042 4.042 20 C 0.310 3.690 21 O -0.376 6.376 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.226 5.114 7.159 12.045 hybrid contribution 0.891 -0.230 0.035 0.921 sum -7.335 4.884 7.194 11.376 Atomic orbital electron populations 1.22399 0.99003 1.00407 0.99606 1.21140 0.91433 0.95102 1.03141 1.21763 1.01861 0.97023 0.98172 1.18606 0.96389 0.93032 0.86412 0.95269 1.21138 0.90996 1.27717 1.12433 0.91920 1.24867 0.97477 0.95914 0.95885 1.69892 1.34548 1.32658 1.16947 0.86729 0.86742 0.77788 0.77167 1.20372 1.21763 1.20547 1.22178 0.93259 1.01674 0.96060 0.88578 1.23143 0.97876 1.03234 0.92863 1.22067 0.87122 0.96633 0.96161 1.48359 1.15213 1.59804 1.14768 1.21357 1.02325 0.97283 0.83224 1.21168 0.84104 0.78530 0.85186 1.90688 1.20093 1.46204 1.80580 0.92807 0.95136 0.93686 0.88600 0.92229 0.95539 0.94599 0.93376 0.89754 0.89595 0.91612 0.92304 0.93451 0.92072 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 7.69 37.16 0.29 -2.53 16 2 C -0.09 -1.96 2.58 -90.62 -0.23 -2.19 16 3 C -0.13 -2.60 8.53 37.16 0.32 -2.28 16 4 C 0.07 1.80 1.16 -91.77 -0.11 1.69 16 5 H 0.03 0.80 8.03 -51.93 -0.42 0.38 16 6 C -0.48 -13.55 6.24 -34.44 -0.22 -13.77 16 7 H 0.06 1.84 6.71 -52.48 -0.35 1.49 16 8 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 9 N -0.90 -26.28 11.67 55.43 0.65 -25.63 16 10 Si 0.89 22.82 29.54 -169.99 -5.02 17.80 16 11 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C -0.11 -2.21 2.00 -90.62 -0.18 -2.40 16 15 H 0.10 1.90 6.17 -51.93 -0.32 1.58 16 16 C -0.13 -2.03 4.60 -25.10 -0.12 -2.15 16 17 C 0.10 1.38 7.35 -3.12 -0.02 1.36 16 18 N -0.64 -10.90 3.33 -180.29 -0.60 -11.50 16 19 C 0.10 1.39 10.97 59.84 0.66 2.05 16 20 C 0.52 11.32 7.41 -10.86 -0.08 11.24 16 21 O -0.50 -13.17 15.25 5.56 0.08 -13.09 16 22 H 0.05 0.82 4.52 -51.93 -0.23 0.59 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.82 7.32 -51.93 -0.38 0.44 16 25 H 0.10 2.48 6.36 -51.93 -0.33 2.15 16 26 H 0.06 1.31 7.48 -51.93 -0.39 0.92 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.63 6.13 -51.93 -0.32 0.31 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.08 1.33 6.28 -51.93 -0.33 1.01 16 31 H 0.09 1.11 6.39 -51.93 -0.33 0.78 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 LS Contribution 275.43 15.07 4.15 4.15 Total: -1.00 -31.95 275.43 -6.01 -37.96 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.48 Total: -2.28 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 0.21 Total: -7.41 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.05 Total: -37.13 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.95 -6.01 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.125 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds