Wall clock time and date at job start Mon Mar 30 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46768 * 2 1 4 4 C 1.52994 * 109.46929 * 120.00013 * 2 1 3 5 5 H 1.08999 * 109.47658 * 54.31118 * 4 2 1 6 6 C 1.50706 * 109.47031 * 174.31148 * 4 2 1 7 7 H 1.08004 * 119.99939 * 114.37290 * 6 4 2 8 8 C 1.37875 * 119.99800 * 294.38163 * 6 4 2 9 9 N 1.31515 * 120.00322 * 1.49061 * 8 6 4 10 10 Si 1.86798 * 120.00087 * 181.49071 * 8 6 4 11 11 H 1.48499 * 109.47065 * 59.99566 * 10 8 6 12 12 H 1.48495 * 109.47479 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47060 * 299.99815 * 10 8 6 14 14 C 1.53003 * 109.47325 * 294.30711 * 4 2 1 15 15 H 1.09000 * 110.43235 * 303.16088 * 14 4 2 16 16 C 1.54633 * 110.48151 * 65.69664 * 14 4 2 17 17 C 1.54481 * 101.75980 * 143.61135 * 16 14 4 18 18 N 1.46763 * 105.47676 * 334.58428 * 17 16 14 19 19 C 1.46495 * 124.35045 * 197.02228 * 18 17 16 20 20 C 1.34420 * 111.30052 * 17.28035 * 18 17 16 21 21 O 1.21278 * 124.94487 * 179.30546 * 20 18 17 22 22 H 1.08998 * 109.47060 * 311.91036 * 1 2 3 23 23 H 1.09002 * 109.46774 * 71.90823 * 1 2 3 24 24 H 1.09003 * 109.46830 * 191.90605 * 1 2 3 25 25 H 1.08999 * 109.47100 * 239.99973 * 2 1 3 26 26 H 1.09003 * 109.46666 * 182.42996 * 3 2 1 27 27 H 1.09000 * 109.47236 * 302.41875 * 3 2 1 28 28 H 1.08999 * 109.47333 * 62.42413 * 3 2 1 29 29 H 0.97001 * 120.00349 * 180.02562 * 9 8 6 30 30 H 1.08995 * 110.97042 * 25.49318 * 16 14 4 31 31 H 1.09000 * 111.00044 * 261.74030 * 16 14 4 32 32 H 1.09005 * 110.24434 * 215.58534 * 17 16 14 33 33 H 1.09002 * 110.24947 * 93.58658 * 17 16 14 34 34 H 1.08998 * 109.47451 * 89.99776 * 19 18 17 35 35 H 1.08998 * 109.46988 * 329.99401 * 19 18 17 36 36 H 1.08997 * 109.47132 * 209.99512 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5959 -1.7153 1.3017 6 6 3.5405 -0.8444 1.1808 7 1 4.1583 -0.3221 1.8963 8 6 4.1244 -1.6237 0.2048 9 7 3.3735 -2.2360 -0.6845 10 14 5.9821 -1.8098 0.1454 11 1 6.4604 -2.4093 1.4170 12 1 6.3552 -2.6928 -0.9887 13 1 6.6077 -0.4756 -0.0389 14 6 1.6502 0.0779 2.4944 15 1 2.0401 1.0938 2.4320 16 6 0.1135 0.0975 2.6655 17 6 -0.0332 0.0269 4.2017 18 7 1.1902 -0.6260 4.6823 19 6 1.3414 -1.2221 6.0120 20 6 2.1561 -0.6018 3.7477 21 8 3.2700 -1.0604 3.8879 22 1 -0.3633 0.6864 0.7648 23 1 -0.3633 0.3191 -0.9769 24 1 -0.3633 -1.0056 0.2120 25 1 1.8934 -0.5138 -0.8900 26 1 3.1291 1.4428 -0.0436 27 1 1.6416 1.9687 -0.8675 28 1 1.7126 1.9436 0.9109 29 1 3.7843 -2.7846 -1.3710 30 1 -0.3431 -0.7703 2.1898 31 1 -0.3112 1.0224 2.2753 32 1 -0.9075 -0.5660 4.4703 33 1 -0.1142 1.0304 4.6195 34 1 1.0422 -2.2696 5.9767 35 1 0.7116 -0.6879 6.7233 36 1 2.3831 -1.1522 6.3251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:58 Heat of formation + Delta-G solvation = -55.037303 kcal Electronic energy + Delta-G solvation = -16769.389644 eV Core-core repulsion = 14252.745319 eV Total energy + Delta-G solvation = -2516.644325 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42622 -38.08288 -37.00102 -34.14664 -32.78846 -30.11867 -28.01734 -27.57154 -26.90313 -24.54809 -22.15877 -20.66021 -19.76162 -18.14661 -17.61014 -17.12403 -16.56475 -15.93319 -15.27186 -14.88427 -14.68765 -14.46066 -14.01428 -13.92458 -13.56564 -13.36985 -13.11934 -12.94593 -12.85990 -12.82902 -12.43217 -12.16886 -12.00205 -11.46816 -11.33781 -11.28576 -10.86324 -10.72044 -10.31647 -10.07403 -9.49503 -8.01159 -6.03391 1.34746 1.38172 1.45930 1.86448 2.32845 2.48364 3.28580 3.75290 3.85925 4.10192 4.39235 4.49153 4.53504 4.63697 4.67627 4.70417 4.78503 4.84526 4.87045 5.03829 5.07529 5.16616 5.21137 5.23250 5.43948 5.47494 5.68086 5.78789 5.84104 5.87483 6.04021 6.21256 6.36883 6.52860 7.03146 7.49672 7.59616 9.04827 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.011871 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.454340 B = 2358.042545 C = 3164.059691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.124 4.124 4 C 0.077 3.923 5 H -0.014 1.014 6 C -0.487 4.487 7 H 0.041 0.959 8 C 0.009 3.991 9 N -0.921 5.921 10 Si 0.932 3.068 11 H -0.291 1.291 12 H -0.282 1.282 13 H -0.270 1.270 14 C -0.112 4.112 15 H 0.100 0.900 16 C -0.126 4.126 17 C 0.103 3.897 18 N -0.638 5.638 19 C 0.094 3.906 20 C 0.504 3.496 21 O -0.568 6.568 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.255 0.745 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 7.372 8.274 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.181 4.181 4 C 0.058 3.942 5 H 0.005 0.995 6 C -0.526 4.526 7 H 0.059 0.941 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.760 3.240 11 H -0.217 1.217 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.133 4.133 15 H 0.118 0.882 16 C -0.163 4.163 17 C -0.019 4.019 18 N -0.373 5.373 19 C -0.047 4.047 20 C 0.293 3.707 21 O -0.446 6.446 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.838 6.980 8.292 15.328 hybrid contribution 1.658 -0.818 -0.231 1.863 sum -9.180 6.162 8.061 13.683 Atomic orbital electron populations 1.22288 0.95357 1.01002 1.01693 1.20970 0.94558 0.95542 0.99697 1.21673 0.99816 0.96003 1.00607 1.18455 0.93706 0.92075 0.89923 0.99547 1.21395 0.93393 1.26769 1.11051 0.94093 1.25475 1.00663 0.96402 0.96170 1.70005 1.35451 1.33420 1.17423 0.86016 0.83320 0.78114 0.76582 1.21732 1.20783 1.19531 1.22056 0.97221 1.00585 0.93452 0.88208 1.23145 0.93484 1.04747 0.94898 1.22391 0.86272 0.98803 0.94420 1.48487 1.15278 1.58616 1.14959 1.21588 1.02372 0.98220 0.82538 1.21570 0.84073 0.78330 0.86725 1.90640 1.22867 1.49193 1.81926 0.89265 0.93781 0.94565 0.93159 0.95432 0.93190 0.91915 0.93646 0.90454 0.86043 0.88364 0.88835 0.92990 0.87500 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 7.69 71.98 0.55 -4.34 16 2 C -0.09 -3.87 2.58 -10.79 -0.03 -3.90 16 3 C -0.12 -4.74 8.53 71.98 0.61 -4.13 16 4 C 0.08 3.82 1.16 -11.54 -0.01 3.81 16 5 H -0.01 -0.78 8.03 -2.39 -0.02 -0.80 16 6 C -0.49 -28.45 6.24 25.60 0.16 -28.29 16 7 H 0.04 2.52 6.71 -2.91 -0.02 2.50 16 8 C 0.01 0.56 5.31 84.65 0.45 1.01 16 9 N -0.92 -55.98 11.67 21.45 0.25 -55.73 16 10 Si 0.93 48.49 29.54 68.60 2.03 50.52 16 11 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 12 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 13 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 14 C -0.11 -4.37 2.00 -10.80 -0.02 -4.40 16 15 H 0.10 3.79 6.17 -2.39 -0.01 3.78 16 16 C -0.13 -3.32 4.60 31.65 0.15 -3.17 16 17 C 0.10 2.21 7.35 86.83 0.64 2.85 16 18 N -0.64 -20.07 3.33 -842.91 -2.81 -22.88 16 19 C 0.09 2.38 10.97 127.77 1.40 3.78 16 20 C 0.50 21.91 7.41 87.90 0.65 22.56 16 21 O -0.57 -31.04 15.25 -3.02 -0.05 -31.09 16 22 H 0.09 2.31 4.52 -2.39 -0.01 2.30 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.26 7.32 -2.39 -0.02 1.24 16 25 H 0.05 2.67 6.36 -2.39 -0.02 2.65 16 26 H 0.03 1.19 7.48 -2.39 -0.02 1.18 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.03 6.13 -2.39 -0.01 2.02 16 29 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.08 2.20 6.28 -2.39 -0.01 2.18 16 31 H 0.12 2.37 6.39 -2.39 -0.02 2.36 16 32 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16 Total: -1.00 -75.54 275.43 5.03 -70.52 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.06 Total: 2.86 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.55 Total: -14.20 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -2.56 Total: -78.61 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.09 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -75.54 5.03 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.479 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds