Wall clock time and date at job start Mon Mar 30 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47401 * 119.99575 * 2 1 3 5 5 H 1.09003 * 109.46817 * 54.69447 * 4 2 1 6 6 C 1.50691 * 109.47581 * 294.69575 * 4 2 1 7 7 H 1.08004 * 120.00231 * 294.74918 * 6 4 2 8 8 C 1.37880 * 120.00098 * 114.74031 * 6 4 2 9 9 N 1.31518 * 120.00085 * 186.81296 * 8 6 4 10 10 Si 1.86801 * 120.00015 * 6.81424 * 8 6 4 11 11 H 1.48495 * 109.46985 * 271.95062 * 10 8 6 12 12 H 1.48499 * 109.46943 * 151.95208 * 10 8 6 13 13 H 1.48502 * 109.46873 * 31.94863 * 10 8 6 14 14 C 1.53005 * 109.47290 * 174.68919 * 4 2 1 15 15 H 1.09001 * 110.42699 * 67.64704 * 14 4 2 16 16 C 1.54626 * 110.48663 * 305.10504 * 14 4 2 17 17 C 1.54474 * 101.76049 * 216.52072 * 16 14 4 18 18 N 1.46759 * 105.47729 * 25.41708 * 17 16 14 19 19 C 1.46504 * 124.35271 * 162.98236 * 18 17 16 20 20 C 1.34420 * 111.29991 * 342.98119 * 18 17 16 21 21 O 1.21283 * 124.94374 * 180.43773 * 20 18 17 22 22 H 1.08999 * 109.47147 * 305.46457 * 1 2 3 23 23 H 1.08996 * 109.47364 * 65.46784 * 1 2 3 24 24 H 1.09000 * 109.47197 * 185.46760 * 1 2 3 25 25 H 1.08995 * 109.47568 * 240.00212 * 2 1 3 26 26 H 1.09008 * 109.47210 * 180.93927 * 3 2 1 27 27 H 1.08999 * 109.47348 * 300.94019 * 3 2 1 28 28 H 1.08999 * 109.47131 * 60.93901 * 3 2 1 29 29 H 0.97000 * 120.00146 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.97256 * 334.64169 * 16 14 4 31 31 H 1.09005 * 110.96900 * 98.36804 * 16 14 4 32 32 H 1.09001 * 110.24621 * 144.42102 * 17 16 14 33 33 H 1.09001 * 110.24752 * 266.41650 * 17 16 14 34 34 H 1.08995 * 109.47262 * 89.99795 * 19 18 17 35 35 H 1.08993 * 109.47063 * 210.00446 * 19 18 17 36 36 H 1.09000 * 109.46850 * 330.00058 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6012 -1.7177 1.2981 6 6 1.6479 0.0610 2.4762 7 1 2.0605 1.0449 2.6441 8 6 0.7623 -0.4794 3.3844 9 7 0.3164 0.2515 4.3828 10 14 0.1958 -2.2495 3.1968 11 1 -0.9993 -2.2961 2.3167 12 1 -0.1500 -2.8025 4.5309 13 1 1.2865 -3.0569 2.5937 14 6 3.5642 -0.8378 1.1843 15 1 4.0251 0.1462 1.2709 16 6 3.9988 -1.5252 -0.1308 17 6 5.2080 -2.3648 0.3374 18 7 4.9858 -2.6077 1.7676 19 6 5.6724 -3.6408 2.5471 20 6 4.0714 -1.7605 2.2705 21 8 3.7065 -1.7386 3.4270 22 1 -0.3633 0.5962 0.8370 23 1 -0.3634 0.4267 -0.9348 24 1 -0.3633 -1.0230 0.0979 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0168 27 1 1.6629 1.9612 -0.8814 28 1 1.6904 1.9515 0.8983 29 1 -0.3064 -0.1288 5.0219 30 1 3.2056 -2.1653 -0.5170 31 1 4.2998 -0.7881 -0.8753 32 1 5.2436 -3.3098 -0.2046 33 1 6.1336 -1.8087 0.1886 34 1 6.5885 -3.2284 2.9698 35 1 5.0215 -3.9810 3.3525 36 1 5.9181 -4.4819 1.8988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:01 Heat of formation + Delta-G solvation = -41.680984 kcal Electronic energy + Delta-G solvation = -16829.894679 eV Core-core repulsion = 14313.829528 eV Total energy + Delta-G solvation = -2516.065151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87408 -36.33056 -35.48565 -31.98521 -31.87440 -28.50411 -26.43129 -26.34385 -25.42253 -22.42119 -21.35027 -18.71380 -18.13677 -17.03864 -15.92520 -15.78282 -14.74499 -14.08147 -13.83456 -13.35606 -13.28944 -12.90047 -12.58961 -12.25897 -12.23646 -12.05002 -11.76158 -11.63579 -11.38930 -11.10218 -10.71183 -10.61137 -10.28948 -10.11704 -9.75891 -9.50678 -9.28209 -8.75793 -8.60941 -8.26699 -8.18516 -5.87346 -3.81702 3.38705 3.47943 3.53127 3.55166 3.58596 4.63211 4.99858 5.01380 5.20090 5.44877 5.55078 5.60492 5.69742 5.79612 5.93081 5.96486 5.99138 6.02493 6.14366 6.28593 6.45776 6.51602 6.62197 6.68359 6.80465 6.95562 7.06806 7.17962 7.24713 7.33812 7.42265 7.74534 7.94530 8.68267 9.08195 9.16320 9.79936 11.26846 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.014118 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.513780 B = 1982.872938 C = 2680.357846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.135 4.135 4 C 0.031 3.969 5 H 0.036 0.964 6 C -0.484 4.484 7 H 0.074 0.926 8 C 0.088 3.912 9 N -0.903 5.903 10 Si 0.876 3.124 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.271 1.271 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.135 4.135 17 C 0.108 3.892 18 N -0.645 5.645 19 C 0.101 3.899 20 C 0.518 3.482 21 O -0.492 6.492 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.259 0.741 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 -5.123 -10.841 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.192 4.192 4 C 0.012 3.988 5 H 0.054 0.946 6 C -0.522 4.522 7 H 0.092 0.908 8 C -0.113 4.113 9 N -0.542 5.542 10 Si 0.705 3.295 11 H -0.211 1.211 12 H -0.222 1.222 13 H -0.196 1.196 14 C -0.128 4.128 15 H 0.116 0.884 16 C -0.173 4.173 17 C -0.015 4.015 18 N -0.384 5.384 19 C -0.041 4.041 20 C 0.306 3.694 21 O -0.364 6.364 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.971 -5.158 -9.961 13.761 hybrid contribution -0.152 -1.172 0.014 1.182 sum 7.819 -6.330 -9.947 14.148 Atomic orbital electron populations 1.21720 0.96232 1.00820 1.00516 1.21168 0.95292 0.96255 0.97435 1.21767 0.99376 0.96957 1.01081 1.19194 0.87797 0.96573 0.95271 0.94603 1.20675 1.25153 1.02988 1.03350 0.90808 1.24877 0.95422 0.96220 0.94771 1.69885 1.32656 1.36144 1.15484 0.86912 0.78125 0.87624 0.76795 1.21055 1.22165 1.19607 1.22190 1.01774 0.97914 0.90921 0.88370 1.22772 0.96826 0.99188 0.98533 1.21951 0.98661 0.99660 0.81268 1.48377 1.43472 1.36035 1.10515 1.21363 0.96776 0.90043 0.95962 1.21101 0.77777 0.80906 0.89619 1.90726 1.57896 1.69449 1.18283 0.91066 0.94906 0.94404 0.94118 0.94142 0.95171 0.90981 0.93081 0.90519 0.90017 0.91638 0.92112 0.93465 0.91219 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.92 37.16 0.33 -2.35 16 2 C -0.08 -1.59 2.49 -90.62 -0.23 -1.82 16 3 C -0.13 -2.44 8.61 37.16 0.32 -2.12 16 4 C 0.03 0.70 1.01 -91.77 -0.09 0.61 16 5 H 0.04 0.88 4.58 -51.93 -0.24 0.64 16 6 C -0.48 -13.32 5.75 -34.44 -0.20 -13.52 16 7 H 0.07 2.21 7.13 -52.48 -0.37 1.84 16 8 C 0.09 2.62 5.44 -17.82 -0.10 2.52 16 9 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 10 Si 0.88 23.53 26.79 -169.99 -4.55 18.98 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 13 H -0.27 -7.23 6.52 56.52 0.37 -6.86 16 14 C -0.11 -2.10 2.03 -90.63 -0.18 -2.28 16 15 H 0.10 1.94 7.04 -51.93 -0.37 1.57 16 16 C -0.14 -1.97 5.41 -25.10 -0.14 -2.11 16 17 C 0.11 1.42 7.35 -3.13 -0.02 1.40 16 18 N -0.65 -11.10 3.33 -180.30 -0.60 -11.70 16 19 C 0.10 1.43 10.96 59.85 0.66 2.09 16 20 C 0.52 11.41 7.41 -10.86 -0.08 11.33 16 21 O -0.49 -13.24 16.02 5.56 0.09 -13.15 16 22 H 0.07 1.59 7.57 -51.93 -0.39 1.20 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.68 6.66 -51.93 -0.35 0.34 16 26 H 0.04 0.67 6.81 -51.92 -0.35 0.32 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 1.51 6.53 -51.93 -0.34 1.17 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -33.49 281.42 -5.54 -39.03 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.76 Total: -3.38 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.27 Total: -6.25 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.17 Total: -39.47 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.55 Total: 18.98 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.49 -5.54 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.654 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds