Wall clock time and date at job start Mon Mar 30 2020 03:51:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 109.46957 * 2 1
4 4 C 1.53002 * 109.47401 * 119.99575 * 2 1 3
5 5 H 1.09003 * 109.46817 * 54.69447 * 4 2 1
6 6 C 1.50691 * 109.47581 * 294.69575 * 4 2 1
7 7 H 1.08004 * 120.00231 * 294.74918 * 6 4 2
8 8 C 1.37880 * 120.00098 * 114.74031 * 6 4 2
9 9 N 1.31518 * 120.00085 * 186.81296 * 8 6 4
10 10 Si 1.86801 * 120.00015 * 6.81424 * 8 6 4
11 11 H 1.48495 * 109.46985 * 271.95062 * 10 8 6
12 12 H 1.48499 * 109.46943 * 151.95208 * 10 8 6
13 13 H 1.48502 * 109.46873 * 31.94863 * 10 8 6
14 14 C 1.53005 * 109.47290 * 174.68919 * 4 2 1
15 15 H 1.09001 * 110.42699 * 67.64704 * 14 4 2
16 16 C 1.54626 * 110.48663 * 305.10504 * 14 4 2
17 17 C 1.54474 * 101.76049 * 216.52072 * 16 14 4
18 18 N 1.46759 * 105.47729 * 25.41708 * 17 16 14
19 19 C 1.46504 * 124.35271 * 162.98236 * 18 17 16
20 20 C 1.34420 * 111.29991 * 342.98119 * 18 17 16
21 21 O 1.21283 * 124.94374 * 180.43773 * 20 18 17
22 22 H 1.08999 * 109.47147 * 305.46457 * 1 2 3
23 23 H 1.08996 * 109.47364 * 65.46784 * 1 2 3
24 24 H 1.09000 * 109.47197 * 185.46760 * 1 2 3
25 25 H 1.08995 * 109.47568 * 240.00212 * 2 1 3
26 26 H 1.09008 * 109.47210 * 180.93927 * 3 2 1
27 27 H 1.08999 * 109.47348 * 300.94019 * 3 2 1
28 28 H 1.08999 * 109.47131 * 60.93901 * 3 2 1
29 29 H 0.97000 * 120.00146 * 180.02562 * 9 8 6
30 30 H 1.08997 * 110.97256 * 334.64169 * 16 14 4
31 31 H 1.09005 * 110.96900 * 98.36804 * 16 14 4
32 32 H 1.09001 * 110.24621 * 144.42102 * 17 16 14
33 33 H 1.09001 * 110.24752 * 266.41650 * 17 16 14
34 34 H 1.08995 * 109.47262 * 89.99795 * 19 18 17
35 35 H 1.08993 * 109.47063 * 210.00446 * 19 18 17
36 36 H 1.09000 * 109.46850 * 330.00058 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.6012 -1.7177 1.2981
6 6 1.6479 0.0610 2.4762
7 1 2.0605 1.0449 2.6441
8 6 0.7623 -0.4794 3.3844
9 7 0.3164 0.2515 4.3828
10 14 0.1958 -2.2495 3.1968
11 1 -0.9993 -2.2961 2.3167
12 1 -0.1500 -2.8025 4.5309
13 1 1.2865 -3.0569 2.5937
14 6 3.5642 -0.8378 1.1843
15 1 4.0251 0.1462 1.2709
16 6 3.9988 -1.5252 -0.1308
17 6 5.2080 -2.3648 0.3374
18 7 4.9858 -2.6077 1.7676
19 6 5.6724 -3.6408 2.5471
20 6 4.0714 -1.7605 2.2705
21 8 3.7065 -1.7386 3.4270
22 1 -0.3633 0.5962 0.8370
23 1 -0.3634 0.4267 -0.9348
24 1 -0.3633 -1.0230 0.0979
25 1 1.8934 -0.5138 -0.8899
26 1 3.1299 1.4426 -0.0168
27 1 1.6629 1.9612 -0.8814
28 1 1.6904 1.9515 0.8983
29 1 -0.3064 -0.1288 5.0219
30 1 3.2056 -2.1653 -0.5170
31 1 4.2998 -0.7881 -0.8753
32 1 5.2436 -3.3098 -0.2046
33 1 6.1336 -1.8087 0.1886
34 1 6.5885 -3.2284 2.9698
35 1 5.0215 -3.9810 3.3525
36 1 5.9181 -4.4819 1.8988
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259869381.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:01
Heat of formation + Delta-G solvation = -65.247666 kcal
Electronic energy + Delta-G solvation = -16830.916607 eV
Core-core repulsion = 14313.829528 eV
Total energy + Delta-G solvation = -2517.087079 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.36732 -38.01195 -37.05579 -34.09904 -33.27570 -30.10126 -27.91932 -27.75315
-27.05484 -24.18712 -22.66982 -20.19936 -19.86558 -19.02199 -17.37251 -17.25956
-16.36383 -15.93843 -15.47338 -14.94176 -14.65984 -14.52347 -14.36346 -13.83895
-13.79966 -13.27543 -13.25134 -13.12825 -12.87900 -12.83068 -12.58575 -12.11139
-11.85707 -11.74450 -11.55113 -11.36480 -11.03443 -10.69344 -10.49228 -10.24763
-9.52643 -8.16440 -6.08541 1.22453 1.31483 1.36201 1.86045 2.29974
2.41280 3.25830 3.72555 3.82664 4.09951 4.35982 4.39313 4.44463
4.45949 4.53512 4.59633 4.76488 4.80224 4.84610 4.99073 5.02737
5.15329 5.16515 5.17798 5.32549 5.38900 5.50307 5.60287 5.69393
5.73665 5.85155 5.98139 6.30243 6.44821 6.91949 7.50158 7.54315
9.02569
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.022805 B = 0.014118 C = 0.010444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1227.513780 B = 1982.872938 C = 2680.357846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.079 4.079
3 C -0.130 4.130
4 C 0.028 3.972
5 H 0.021 0.979
6 C -0.456 4.456
7 H 0.035 0.965
8 C 0.027 3.973
9 N -0.959 5.959
10 Si 0.924 3.076
11 H -0.263 1.263
12 H -0.310 1.310
13 H -0.267 1.267
14 C -0.111 4.111
15 H 0.094 0.906
16 C -0.124 4.124
17 C 0.104 3.896
18 N -0.641 5.641
19 C 0.094 3.906
20 C 0.498 3.502
21 O -0.563 6.563
22 H 0.030 0.970
23 H 0.068 0.932
24 H 0.032 0.968
25 H 0.086 0.914
26 H 0.057 0.943
27 H 0.060 0.940
28 H 0.029 0.971
29 H 0.254 0.746
30 H 0.082 0.918
31 H 0.119 0.881
32 H 0.102 0.898
33 H 0.089 0.911
34 H 0.060 0.940
35 H 0.042 0.958
36 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.142 -6.638 -15.064 19.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.098 4.098
3 C -0.187 4.187
4 C 0.008 3.992
5 H 0.039 0.961
6 C -0.494 4.494
7 H 0.053 0.947
8 C -0.168 4.168
9 N -0.602 5.602
10 Si 0.753 3.247
11 H -0.188 1.188
12 H -0.238 1.238
13 H -0.193 1.193
14 C -0.133 4.133
15 H 0.112 0.888
16 C -0.161 4.161
17 C -0.017 4.017
18 N -0.377 5.377
19 C -0.047 4.047
20 C 0.287 3.713
21 O -0.440 6.440
22 H 0.050 0.950
23 H 0.087 0.913
24 H 0.051 0.949
25 H 0.104 0.896
26 H 0.076 0.924
27 H 0.079 0.921
28 H 0.048 0.952
29 H 0.063 0.937
30 H 0.101 0.899
31 H 0.137 0.863
32 H 0.120 0.880
33 H 0.107 0.893
34 H 0.079 0.921
35 H 0.061 0.939
36 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 9.891 -6.707 -14.273 18.616
hybrid contribution -0.597 -0.657 1.268 1.548
sum 9.294 -7.364 -13.006 17.600
Atomic orbital electron populations
1.21724 0.96844 1.00045 1.00776 1.21151 0.94819 0.96800 0.97012
1.21693 1.00485 0.96092 1.00415 1.19212 0.90300 0.95113 0.94550
0.96125 1.20954 1.22507 1.01438 1.04509 0.94677 1.25533 0.96745
0.99362 0.95121 1.70034 1.35001 1.37792 1.17378 0.86117 0.78386
0.83938 0.76239 1.18845 1.23753 1.19280 1.22076 0.99148 0.98191
0.93868 0.88831 1.22817 0.97560 0.99776 0.95991 1.22322 0.99080
1.01721 0.78567 1.48530 1.41708 1.34930 1.12536 1.21582 0.96240
0.90752 0.96146 1.21646 0.78513 0.81976 0.89166 1.90688 1.60641
1.71657 1.20998 0.95029 0.91273 0.94869 0.89631 0.92449 0.92105
0.95220 0.93676 0.89927 0.86285 0.88018 0.89275 0.92124 0.93926
0.87768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.14 8.92 71.98 0.64 -4.50 16
2 C -0.08 -2.82 2.49 -10.79 -0.03 -2.85 16
3 C -0.13 -4.40 8.61 71.98 0.62 -3.78 16
4 C 0.03 1.23 1.01 -11.54 -0.01 1.21 16
5 H 0.02 0.98 4.58 -2.39 -0.01 0.97 16
6 C -0.46 -26.09 5.75 25.60 0.15 -25.95 16
7 H 0.04 2.24 7.13 -2.91 -0.02 2.22 16
8 C 0.03 1.70 5.44 84.65 0.46 2.16 16
9 N -0.96 -64.42 13.96 21.45 0.30 -64.12 16
10 Si 0.92 50.22 26.79 68.60 1.84 52.06 16
11 H -0.26 -13.16 7.11 99.48 0.71 -12.45 16
12 H -0.31 -17.38 7.11 99.48 0.71 -16.67 16
13 H -0.27 -14.21 6.52 99.48 0.65 -13.56 16
14 C -0.11 -4.16 2.03 -10.80 -0.02 -4.19 16
15 H 0.09 3.56 7.04 -2.39 -0.02 3.54 16
16 C -0.12 -2.92 5.41 31.65 0.17 -2.75 16
17 C 0.10 2.14 7.35 86.83 0.64 2.78 16
18 N -0.64 -20.13 3.33 -842.93 -2.81 -22.94 16
19 C 0.09 2.43 10.96 127.77 1.40 3.83 16
20 C 0.50 21.64 7.41 87.90 0.65 22.29 16
21 O -0.56 -31.34 16.02 -3.04 -0.05 -31.39 16
22 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16
23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16
25 H 0.09 2.37 6.66 -2.39 -0.02 2.35 16
26 H 0.06 1.73 6.81 -2.38 -0.02 1.71 16
27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
28 H 0.03 1.24 6.53 -2.39 -0.02 1.22 16
29 H 0.25 16.41 8.31 -92.71 -0.77 15.63 16
30 H 0.08 1.90 7.49 -2.39 -0.02 1.88 16
31 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16
32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.04 1.33 7.93 -2.39 -0.02 1.31 16
36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
Total: -1.00 -80.58 281.42 4.93 -75.65
By element:
Atomic # 1 Polarization: 1.50 SS G_CDS: 0.99 Total: 2.49 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: 4.67 Total: -11.74 kcal
Atomic # 7 Polarization: -84.55 SS G_CDS: -2.51 Total: -87.06 kcal
Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal
Atomic # 14 Polarization: 50.22 SS G_CDS: 1.84 Total: 52.06 kcal
Total: -80.58 4.93 -75.65 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259869381.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.399 kcal
(2) G-P(sol) polarization free energy of solvation -80.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds