Wall clock time and date at job start Mon Mar 30 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47401 * 119.99575 * 2 1 3 5 5 H 1.09003 * 109.46817 * 54.69447 * 4 2 1 6 6 C 1.50691 * 109.47581 * 294.69575 * 4 2 1 7 7 H 1.08004 * 120.00231 * 294.74918 * 6 4 2 8 8 C 1.37880 * 120.00098 * 114.74031 * 6 4 2 9 9 N 1.31518 * 120.00085 * 186.81296 * 8 6 4 10 10 Si 1.86801 * 120.00015 * 6.81424 * 8 6 4 11 11 H 1.48495 * 109.46985 * 271.95062 * 10 8 6 12 12 H 1.48499 * 109.46943 * 151.95208 * 10 8 6 13 13 H 1.48502 * 109.46873 * 31.94863 * 10 8 6 14 14 C 1.53005 * 109.47290 * 174.68919 * 4 2 1 15 15 H 1.09001 * 110.42699 * 67.64704 * 14 4 2 16 16 C 1.54626 * 110.48663 * 305.10504 * 14 4 2 17 17 C 1.54474 * 101.76049 * 216.52072 * 16 14 4 18 18 N 1.46759 * 105.47729 * 25.41708 * 17 16 14 19 19 C 1.46504 * 124.35271 * 162.98236 * 18 17 16 20 20 C 1.34420 * 111.29991 * 342.98119 * 18 17 16 21 21 O 1.21283 * 124.94374 * 180.43773 * 20 18 17 22 22 H 1.08999 * 109.47147 * 305.46457 * 1 2 3 23 23 H 1.08996 * 109.47364 * 65.46784 * 1 2 3 24 24 H 1.09000 * 109.47197 * 185.46760 * 1 2 3 25 25 H 1.08995 * 109.47568 * 240.00212 * 2 1 3 26 26 H 1.09008 * 109.47210 * 180.93927 * 3 2 1 27 27 H 1.08999 * 109.47348 * 300.94019 * 3 2 1 28 28 H 1.08999 * 109.47131 * 60.93901 * 3 2 1 29 29 H 0.97000 * 120.00146 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.97256 * 334.64169 * 16 14 4 31 31 H 1.09005 * 110.96900 * 98.36804 * 16 14 4 32 32 H 1.09001 * 110.24621 * 144.42102 * 17 16 14 33 33 H 1.09001 * 110.24752 * 266.41650 * 17 16 14 34 34 H 1.08995 * 109.47262 * 89.99795 * 19 18 17 35 35 H 1.08993 * 109.47063 * 210.00446 * 19 18 17 36 36 H 1.09000 * 109.46850 * 330.00058 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6012 -1.7177 1.2981 6 6 1.6479 0.0610 2.4762 7 1 2.0605 1.0449 2.6441 8 6 0.7623 -0.4794 3.3844 9 7 0.3164 0.2515 4.3828 10 14 0.1958 -2.2495 3.1968 11 1 -0.9993 -2.2961 2.3167 12 1 -0.1500 -2.8025 4.5309 13 1 1.2865 -3.0569 2.5937 14 6 3.5642 -0.8378 1.1843 15 1 4.0251 0.1462 1.2709 16 6 3.9988 -1.5252 -0.1308 17 6 5.2080 -2.3648 0.3374 18 7 4.9858 -2.6077 1.7676 19 6 5.6724 -3.6408 2.5471 20 6 4.0714 -1.7605 2.2705 21 8 3.7065 -1.7386 3.4270 22 1 -0.3633 0.5962 0.8370 23 1 -0.3634 0.4267 -0.9348 24 1 -0.3633 -1.0230 0.0979 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0168 27 1 1.6629 1.9612 -0.8814 28 1 1.6904 1.9515 0.8983 29 1 -0.3064 -0.1288 5.0219 30 1 3.2056 -2.1653 -0.5170 31 1 4.2998 -0.7881 -0.8753 32 1 5.2436 -3.3098 -0.2046 33 1 6.1336 -1.8087 0.1886 34 1 6.5885 -3.2284 2.9698 35 1 5.0215 -3.9810 3.3525 36 1 5.9181 -4.4819 1.8988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:01 Heat of formation + Delta-G solvation = -65.247666 kcal Electronic energy + Delta-G solvation = -16830.916607 eV Core-core repulsion = 14313.829528 eV Total energy + Delta-G solvation = -2517.087079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36732 -38.01195 -37.05579 -34.09904 -33.27570 -30.10126 -27.91932 -27.75315 -27.05484 -24.18712 -22.66982 -20.19936 -19.86558 -19.02199 -17.37251 -17.25956 -16.36383 -15.93843 -15.47338 -14.94176 -14.65984 -14.52347 -14.36346 -13.83895 -13.79966 -13.27543 -13.25134 -13.12825 -12.87900 -12.83068 -12.58575 -12.11139 -11.85707 -11.74450 -11.55113 -11.36480 -11.03443 -10.69344 -10.49228 -10.24763 -9.52643 -8.16440 -6.08541 1.22453 1.31483 1.36201 1.86045 2.29974 2.41280 3.25830 3.72555 3.82664 4.09951 4.35982 4.39313 4.44463 4.45949 4.53512 4.59633 4.76488 4.80224 4.84610 4.99073 5.02737 5.15329 5.16515 5.17798 5.32549 5.38900 5.50307 5.60287 5.69393 5.73665 5.85155 5.98139 6.30243 6.44821 6.91949 7.50158 7.54315 9.02569 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.014118 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.513780 B = 1982.872938 C = 2680.357846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.028 3.972 5 H 0.021 0.979 6 C -0.456 4.456 7 H 0.035 0.965 8 C 0.027 3.973 9 N -0.959 5.959 10 Si 0.924 3.076 11 H -0.263 1.263 12 H -0.310 1.310 13 H -0.267 1.267 14 C -0.111 4.111 15 H 0.094 0.906 16 C -0.124 4.124 17 C 0.104 3.896 18 N -0.641 5.641 19 C 0.094 3.906 20 C 0.498 3.502 21 O -0.563 6.563 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.254 0.746 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -6.638 -15.064 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.187 4.187 4 C 0.008 3.992 5 H 0.039 0.961 6 C -0.494 4.494 7 H 0.053 0.947 8 C -0.168 4.168 9 N -0.602 5.602 10 Si 0.753 3.247 11 H -0.188 1.188 12 H -0.238 1.238 13 H -0.193 1.193 14 C -0.133 4.133 15 H 0.112 0.888 16 C -0.161 4.161 17 C -0.017 4.017 18 N -0.377 5.377 19 C -0.047 4.047 20 C 0.287 3.713 21 O -0.440 6.440 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.891 -6.707 -14.273 18.616 hybrid contribution -0.597 -0.657 1.268 1.548 sum 9.294 -7.364 -13.006 17.600 Atomic orbital electron populations 1.21724 0.96844 1.00045 1.00776 1.21151 0.94819 0.96800 0.97012 1.21693 1.00485 0.96092 1.00415 1.19212 0.90300 0.95113 0.94550 0.96125 1.20954 1.22507 1.01438 1.04509 0.94677 1.25533 0.96745 0.99362 0.95121 1.70034 1.35001 1.37792 1.17378 0.86117 0.78386 0.83938 0.76239 1.18845 1.23753 1.19280 1.22076 0.99148 0.98191 0.93868 0.88831 1.22817 0.97560 0.99776 0.95991 1.22322 0.99080 1.01721 0.78567 1.48530 1.41708 1.34930 1.12536 1.21582 0.96240 0.90752 0.96146 1.21646 0.78513 0.81976 0.89166 1.90688 1.60641 1.71657 1.20998 0.95029 0.91273 0.94869 0.89631 0.92449 0.92105 0.95220 0.93676 0.89927 0.86285 0.88018 0.89275 0.92124 0.93926 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.92 71.98 0.64 -4.50 16 2 C -0.08 -2.82 2.49 -10.79 -0.03 -2.85 16 3 C -0.13 -4.40 8.61 71.98 0.62 -3.78 16 4 C 0.03 1.23 1.01 -11.54 -0.01 1.21 16 5 H 0.02 0.98 4.58 -2.39 -0.01 0.97 16 6 C -0.46 -26.09 5.75 25.60 0.15 -25.95 16 7 H 0.04 2.24 7.13 -2.91 -0.02 2.22 16 8 C 0.03 1.70 5.44 84.65 0.46 2.16 16 9 N -0.96 -64.42 13.96 21.45 0.30 -64.12 16 10 Si 0.92 50.22 26.79 68.60 1.84 52.06 16 11 H -0.26 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.31 -17.38 7.11 99.48 0.71 -16.67 16 13 H -0.27 -14.21 6.52 99.48 0.65 -13.56 16 14 C -0.11 -4.16 2.03 -10.80 -0.02 -4.19 16 15 H 0.09 3.56 7.04 -2.39 -0.02 3.54 16 16 C -0.12 -2.92 5.41 31.65 0.17 -2.75 16 17 C 0.10 2.14 7.35 86.83 0.64 2.78 16 18 N -0.64 -20.13 3.33 -842.93 -2.81 -22.94 16 19 C 0.09 2.43 10.96 127.77 1.40 3.83 16 20 C 0.50 21.64 7.41 87.90 0.65 22.29 16 21 O -0.56 -31.34 16.02 -3.04 -0.05 -31.39 16 22 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 2.37 6.66 -2.39 -0.02 2.35 16 26 H 0.06 1.73 6.81 -2.38 -0.02 1.71 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.24 6.53 -2.39 -0.02 1.22 16 29 H 0.25 16.41 8.31 -92.71 -0.77 15.63 16 30 H 0.08 1.90 7.49 -2.39 -0.02 1.88 16 31 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.04 1.33 7.93 -2.39 -0.02 1.31 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -80.58 281.42 4.93 -75.65 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 0.99 Total: 2.49 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 4.67 Total: -11.74 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.51 Total: -87.06 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.84 Total: 52.06 kcal Total: -80.58 4.93 -75.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.399 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds