Wall clock time and date at job start Mon Mar 30 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.52999 * 109.47069 * 119.99678 * 2 1 3 5 5 H 1.09007 * 109.46882 * 60.24643 * 4 2 1 6 6 C 1.50707 * 109.47155 * 300.24953 * 4 2 1 7 7 H 1.07989 * 119.99757 * 275.65778 * 6 4 2 8 8 C 1.37881 * 119.99899 * 95.65979 * 6 4 2 9 9 N 1.31521 * 119.99862 * 9.03829 * 8 6 4 10 10 Si 1.86792 * 120.00004 * 189.03978 * 8 6 4 11 11 H 1.48497 * 109.47316 * 89.99651 * 10 8 6 12 12 H 1.48502 * 109.47390 * 210.00078 * 10 8 6 13 13 H 1.48507 * 109.47105 * 329.99979 * 10 8 6 14 14 C 1.52993 * 109.47464 * 180.24726 * 4 2 1 15 15 H 1.09001 * 110.43383 * 56.30143 * 14 4 2 16 16 C 1.54631 * 110.48898 * 178.98098 * 14 4 2 17 17 C 1.54472 * 101.76785 * 143.47741 * 16 14 4 18 18 N 1.46764 * 105.47428 * 334.58616 * 17 16 14 19 19 C 1.46500 * 124.35288 * 196.99566 * 18 17 16 20 20 C 1.34425 * 111.29836 * 17.01303 * 18 17 16 21 21 O 1.21285 * 124.93972 * 179.55800 * 20 18 17 22 22 H 1.09000 * 109.47615 * 307.53625 * 1 2 3 23 23 H 1.09008 * 109.47103 * 67.53567 * 1 2 3 24 24 H 1.09002 * 109.47276 * 187.53070 * 1 2 3 25 25 H 1.08999 * 109.47307 * 239.99527 * 2 1 3 26 26 H 1.09008 * 109.46941 * 185.44518 * 3 2 1 27 27 H 1.08996 * 109.46914 * 305.44078 * 3 2 1 28 28 H 1.08997 * 109.47303 * 65.45245 * 3 2 1 29 29 H 0.97000 * 119.99642 * 180.02562 * 9 8 6 30 30 H 1.09004 * 110.96850 * 261.59575 * 16 14 4 31 31 H 1.09000 * 110.96632 * 25.35555 * 16 14 4 32 32 H 1.08999 * 110.25042 * 215.58147 * 17 16 14 33 33 H 1.08999 * 110.24927 * 93.58217 * 17 16 14 34 34 H 1.09001 * 109.47588 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47107 * 299.99917 * 19 18 17 36 36 H 1.09005 * 109.46916 * 59.99349 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6801 -1.7502 1.2471 6 6 1.5325 -0.0143 2.4797 7 1 2.0651 0.8404 2.8696 8 6 0.3883 -0.4588 3.1076 9 7 -0.1605 -1.5977 2.7452 10 14 -0.3824 0.5566 4.4730 11 1 -1.3677 1.5026 3.8905 12 1 -1.0691 -0.3446 5.4329 13 1 0.6771 1.3192 5.1811 14 6 3.5698 -0.7158 1.2525 15 1 3.9470 0.3049 1.1888 16 6 4.1109 -1.4175 2.5198 17 6 5.3632 -2.1366 1.9714 18 7 5.1034 -2.3396 0.5412 19 6 5.8384 -3.2811 -0.3070 20 6 4.1046 -1.5502 0.1096 21 8 3.6927 -1.5120 -1.0305 22 1 -0.3634 0.6261 0.8149 23 1 -0.3634 0.3927 -0.9498 24 1 -0.3634 -1.0188 0.1347 25 1 1.8933 -0.5139 -0.8899 26 1 3.1256 1.4440 -0.0975 27 1 1.5992 1.9836 -0.8372 28 1 1.7585 1.9274 0.9347 29 1 -0.9657 -1.9102 3.1867 30 1 4.3826 -0.6886 3.2833 31 1 3.3875 -2.1349 2.9073 32 1 5.4961 -3.0964 2.4706 33 1 6.2468 -1.5134 2.1094 34 1 5.4476 -3.2358 -1.3236 35 1 6.8958 -3.0168 -0.3117 36 1 5.7183 -4.2918 0.0833 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:04 Heat of formation + Delta-G solvation = -49.220128 kcal Electronic energy + Delta-G solvation = -16695.285603 eV Core-core repulsion = 14178.893530 eV Total energy + Delta-G solvation = -2516.392073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90003 -35.94100 -35.71150 -32.00034 -31.82405 -28.08465 -26.50954 -25.90775 -25.10185 -22.98969 -20.54306 -19.15405 -18.09345 -16.54858 -15.96560 -15.47660 -14.76796 -14.29865 -13.77590 -13.20794 -13.13207 -12.86236 -12.64077 -12.10581 -12.03848 -11.98381 -11.46983 -11.24841 -11.19804 -10.86765 -10.72321 -10.50581 -10.25950 -9.84874 -9.73835 -9.38411 -9.19662 -8.87134 -8.39376 -8.28139 -8.16493 -5.97909 -3.96990 3.29069 3.32803 3.39246 3.41376 3.54374 4.45680 5.09943 5.22418 5.34339 5.42395 5.58955 5.66123 5.77089 5.90949 5.98266 6.15161 6.38439 6.43773 6.51664 6.67076 6.76019 6.87686 7.00053 7.02094 7.14984 7.22887 7.35367 7.56771 7.62052 7.74320 7.86476 7.89052 7.99980 8.47548 8.88511 9.09995 9.63245 11.10892 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.010134 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.268365 B = 2762.405441 C = 3229.541407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.130 4.130 4 C 0.061 3.939 5 H 0.060 0.940 6 C -0.500 4.500 7 H 0.053 0.947 8 C 0.071 3.929 9 N -0.886 5.886 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.275 1.275 14 C -0.109 4.109 15 H 0.091 0.909 16 C -0.109 4.109 17 C 0.101 3.899 18 N -0.635 5.635 19 C 0.095 3.905 20 C 0.518 3.482 21 O -0.534 6.534 22 H 0.053 0.947 23 H 0.013 0.987 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 -0.943 -0.728 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.114 4.114 3 C -0.188 4.188 4 C 0.042 3.958 5 H 0.078 0.922 6 C -0.538 4.538 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.524 5.524 10 Si 0.707 3.293 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.200 1.200 14 C -0.131 4.131 15 H 0.109 0.891 16 C -0.147 4.147 17 C -0.022 4.022 18 N -0.371 5.371 19 C -0.047 4.047 20 C 0.308 3.692 21 O -0.411 6.411 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.990 -1.107 -1.337 9.156 hybrid contribution -0.375 0.467 0.856 1.045 sum 8.615 -0.640 -0.482 8.652 Atomic orbital electron populations 1.21538 0.96268 1.01846 0.97781 1.21317 0.95291 0.95137 0.99628 1.21739 0.98622 0.98135 1.00272 1.18811 0.85136 0.98685 0.93166 0.92220 1.20903 1.09209 1.13396 1.10318 0.92849 1.24871 0.97345 0.94459 0.96388 1.69943 1.20925 1.19015 1.42528 0.86808 0.79769 0.80477 0.82206 1.20753 1.21537 1.20011 1.22245 1.02017 0.97756 0.91052 0.89088 1.22478 0.94797 0.99899 0.97542 1.22148 0.99225 1.00428 0.80420 1.48312 1.36531 1.41488 1.10780 1.21425 0.95532 0.92014 0.95743 1.21626 0.77914 0.79776 0.89839 1.90583 1.60945 1.68297 1.21266 0.92799 0.96832 0.92770 0.92139 0.94867 0.95539 0.92214 0.93097 0.90083 0.89315 0.91440 0.92255 0.90393 0.92977 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.24 37.15 0.31 -2.47 16 2 C -0.09 -2.22 2.54 -90.62 -0.23 -2.45 16 3 C -0.13 -2.74 8.54 37.16 0.32 -2.43 16 4 C 0.06 1.46 1.28 -91.77 -0.12 1.34 16 5 H 0.06 1.64 7.19 -51.93 -0.37 1.27 16 6 C -0.50 -12.53 5.61 -34.44 -0.19 -12.73 16 7 H 0.05 1.33 7.64 -52.49 -0.40 0.93 16 8 C 0.07 1.86 4.34 -17.82 -0.08 1.78 16 9 N -0.89 -24.33 12.23 55.43 0.68 -23.65 16 10 Si 0.88 20.47 29.55 -169.99 -5.02 15.45 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C -0.11 -2.23 2.20 -90.64 -0.20 -2.43 16 15 H 0.09 1.82 6.42 -51.93 -0.33 1.48 16 16 C -0.11 -1.91 5.99 -25.10 -0.15 -2.06 16 17 C 0.10 1.44 7.35 -3.13 -0.02 1.42 16 18 N -0.64 -10.65 3.33 -180.29 -0.60 -11.25 16 19 C 0.10 1.27 11.14 59.85 0.67 1.94 16 20 C 0.52 10.68 7.42 -10.86 -0.08 10.60 16 21 O -0.53 -12.54 14.77 5.55 0.08 -12.46 16 22 H 0.05 1.33 6.96 -51.93 -0.36 0.97 16 23 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 24 H 0.05 1.37 7.86 -51.93 -0.41 0.96 16 25 H 0.06 1.49 5.70 -51.93 -0.30 1.20 16 26 H 0.03 0.66 6.66 -51.92 -0.35 0.31 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.28 6.91 -51.93 -0.36 0.92 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.74 7.91 -51.93 -0.41 1.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.13 7.53 -51.93 -0.39 0.73 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 281.94 15.07 4.25 4.25 Total: -1.00 -28.91 281.94 -6.17 -35.08 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.77 Total: 0.06 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 0.22 Total: -7.47 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.08 Total: -34.90 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.91 -6.17 -35.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.144 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds