Wall clock time and date at job start Mon Mar 30 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.52999 * 109.47069 * 119.99678 * 2 1 3 5 5 H 1.09007 * 109.46882 * 60.24643 * 4 2 1 6 6 C 1.50707 * 109.47155 * 300.24953 * 4 2 1 7 7 H 1.07989 * 119.99757 * 275.65778 * 6 4 2 8 8 C 1.37881 * 119.99899 * 95.65979 * 6 4 2 9 9 N 1.31521 * 119.99862 * 9.03829 * 8 6 4 10 10 Si 1.86792 * 120.00004 * 189.03978 * 8 6 4 11 11 H 1.48497 * 109.47316 * 89.99651 * 10 8 6 12 12 H 1.48502 * 109.47390 * 210.00078 * 10 8 6 13 13 H 1.48507 * 109.47105 * 329.99979 * 10 8 6 14 14 C 1.52993 * 109.47464 * 180.24726 * 4 2 1 15 15 H 1.09001 * 110.43383 * 56.30143 * 14 4 2 16 16 C 1.54631 * 110.48898 * 178.98098 * 14 4 2 17 17 C 1.54472 * 101.76785 * 143.47741 * 16 14 4 18 18 N 1.46764 * 105.47428 * 334.58616 * 17 16 14 19 19 C 1.46500 * 124.35288 * 196.99566 * 18 17 16 20 20 C 1.34425 * 111.29836 * 17.01303 * 18 17 16 21 21 O 1.21285 * 124.93972 * 179.55800 * 20 18 17 22 22 H 1.09000 * 109.47615 * 307.53625 * 1 2 3 23 23 H 1.09008 * 109.47103 * 67.53567 * 1 2 3 24 24 H 1.09002 * 109.47276 * 187.53070 * 1 2 3 25 25 H 1.08999 * 109.47307 * 239.99527 * 2 1 3 26 26 H 1.09008 * 109.46941 * 185.44518 * 3 2 1 27 27 H 1.08996 * 109.46914 * 305.44078 * 3 2 1 28 28 H 1.08997 * 109.47303 * 65.45245 * 3 2 1 29 29 H 0.97000 * 119.99642 * 180.02562 * 9 8 6 30 30 H 1.09004 * 110.96850 * 261.59575 * 16 14 4 31 31 H 1.09000 * 110.96632 * 25.35555 * 16 14 4 32 32 H 1.08999 * 110.25042 * 215.58147 * 17 16 14 33 33 H 1.08999 * 110.24927 * 93.58217 * 17 16 14 34 34 H 1.09001 * 109.47588 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47107 * 299.99917 * 19 18 17 36 36 H 1.09005 * 109.46916 * 59.99349 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6801 -1.7502 1.2471 6 6 1.5325 -0.0143 2.4797 7 1 2.0651 0.8404 2.8696 8 6 0.3883 -0.4588 3.1076 9 7 -0.1605 -1.5977 2.7452 10 14 -0.3824 0.5566 4.4730 11 1 -1.3677 1.5026 3.8905 12 1 -1.0691 -0.3446 5.4329 13 1 0.6771 1.3192 5.1811 14 6 3.5698 -0.7158 1.2525 15 1 3.9470 0.3049 1.1888 16 6 4.1109 -1.4175 2.5198 17 6 5.3632 -2.1366 1.9714 18 7 5.1034 -2.3396 0.5412 19 6 5.8384 -3.2811 -0.3070 20 6 4.1046 -1.5502 0.1096 21 8 3.6927 -1.5120 -1.0305 22 1 -0.3634 0.6261 0.8149 23 1 -0.3634 0.3927 -0.9498 24 1 -0.3634 -1.0188 0.1347 25 1 1.8933 -0.5139 -0.8899 26 1 3.1256 1.4440 -0.0975 27 1 1.5992 1.9836 -0.8372 28 1 1.7585 1.9274 0.9347 29 1 -0.9657 -1.9102 3.1867 30 1 4.3826 -0.6886 3.2833 31 1 3.3875 -2.1349 2.9073 32 1 5.4961 -3.0964 2.4706 33 1 6.2468 -1.5134 2.1094 34 1 5.4476 -3.2358 -1.3236 35 1 6.8958 -3.0168 -0.3117 36 1 5.7183 -4.2918 0.0833 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:04 Heat of formation + Delta-G solvation = -66.327225 kcal Electronic energy + Delta-G solvation = -16696.027423 eV Core-core repulsion = 14178.893530 eV Total energy + Delta-G solvation = -2517.133892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41105 -37.74558 -37.23207 -33.88500 -33.38587 -29.67530 -27.98053 -27.66162 -26.77452 -24.70158 -22.03949 -20.87871 -19.75416 -18.29010 -17.40093 -17.14705 -16.45300 -15.88901 -15.50124 -14.91577 -14.55360 -14.41431 -14.27269 -13.82283 -13.59535 -13.23356 -13.13659 -12.79370 -12.73340 -12.72843 -12.55761 -12.29953 -11.78208 -11.72720 -11.64894 -11.14277 -10.99121 -10.74871 -10.35722 -10.02755 -9.54906 -7.98569 -6.01955 1.45366 1.49584 1.55607 1.74281 2.26790 2.52498 3.32516 3.72639 3.91224 4.14512 4.38989 4.49469 4.51374 4.57509 4.63916 4.67728 4.75725 4.86509 4.87100 5.01631 5.14180 5.26414 5.32706 5.33711 5.42490 5.52792 5.66326 5.76833 5.79161 5.85824 5.97041 6.04051 6.22344 6.50633 7.09363 7.36472 7.60608 9.10216 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.010134 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.268365 B = 2762.405441 C = 3229.541407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.120 4.120 4 C 0.066 3.934 5 H 0.013 0.987 6 C -0.492 4.492 7 H 0.058 0.942 8 C 0.027 3.973 9 N -0.919 5.919 10 Si 0.933 3.067 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.262 1.262 14 C -0.112 4.112 15 H 0.099 0.901 16 C -0.106 4.106 17 C 0.106 3.894 18 N -0.632 5.632 19 C 0.090 3.910 20 C 0.507 3.493 21 O -0.574 6.574 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.026 0.974 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.255 0.745 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -0.198 0.051 11.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.178 4.178 4 C 0.046 3.954 5 H 0.031 0.969 6 C -0.531 4.531 7 H 0.076 0.924 8 C -0.171 4.171 9 N -0.559 5.559 10 Si 0.760 3.240 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.186 1.186 14 C -0.134 4.134 15 H 0.117 0.883 16 C -0.144 4.144 17 C -0.016 4.016 18 N -0.366 5.366 19 C -0.051 4.051 20 C 0.297 3.703 21 O -0.455 6.455 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.118 -0.370 -0.529 11.137 hybrid contribution -0.986 0.186 0.584 1.161 sum 10.132 -0.185 0.055 10.134 Atomic orbital electron populations 1.21426 0.96808 0.99885 0.98319 1.21301 0.94825 0.96730 0.98783 1.21617 0.99305 0.96170 1.00672 1.18617 0.87819 0.95827 0.93087 0.96857 1.21082 1.08838 1.12986 1.10167 0.92370 1.25479 0.97980 0.95167 0.98503 1.70092 1.21274 1.20581 1.43919 0.85949 0.79085 0.79042 0.79933 1.21097 1.21958 1.18645 1.22134 0.99510 0.98779 0.92930 0.88347 1.22407 0.95639 0.99681 0.96671 1.22308 0.98483 1.02081 0.78685 1.48435 1.35354 1.40660 1.12133 1.21670 0.96743 0.92317 0.94392 1.21640 0.78847 0.80588 0.89230 1.90552 1.62483 1.69804 1.22634 0.94122 0.94667 0.95512 0.93573 0.93827 0.93943 0.92676 0.93580 0.88294 0.92313 0.88871 0.88782 0.92104 0.89615 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 8.24 71.98 0.59 -4.58 16 2 C -0.10 -4.61 2.54 -10.80 -0.03 -4.64 16 3 C -0.12 -4.92 8.54 71.98 0.61 -4.31 16 4 C 0.07 3.20 1.28 -11.54 -0.01 3.19 16 5 H 0.01 0.76 7.19 -2.38 -0.02 0.74 16 6 C -0.49 -24.70 5.61 25.60 0.14 -24.55 16 7 H 0.06 2.83 7.64 -2.92 -0.02 2.81 16 8 C 0.03 1.43 4.34 84.65 0.37 1.80 16 9 N -0.92 -52.00 12.23 21.45 0.26 -51.73 16 10 Si 0.93 41.98 29.55 68.60 2.03 44.01 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 14 C -0.11 -4.50 2.20 -10.80 -0.02 -4.53 16 15 H 0.10 3.77 6.42 -2.39 -0.02 3.76 16 16 C -0.11 -3.53 5.99 31.65 0.19 -3.34 16 17 C 0.11 2.67 7.35 86.83 0.64 3.30 16 18 N -0.63 -19.76 3.33 -842.90 -2.81 -22.57 16 19 C 0.09 2.16 11.14 127.77 1.42 3.58 16 20 C 0.51 20.66 7.42 87.89 0.65 21.31 16 21 O -0.57 -27.33 14.77 -3.04 -0.04 -27.38 16 22 H 0.04 2.03 6.96 -2.39 -0.02 2.01 16 23 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.03 1.39 7.86 -2.39 -0.02 1.37 16 25 H 0.05 2.33 5.70 -2.39 -0.01 2.32 16 26 H 0.04 1.67 6.66 -2.38 -0.02 1.65 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 2.28 6.91 -2.39 -0.02 2.27 16 29 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.06 2.31 7.91 -2.39 -0.02 2.29 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.69 7.53 -2.39 -0.02 1.67 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -64.02 281.94 5.03 -58.98 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.04 Total: 11.46 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.56 Total: -12.76 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.55 Total: -74.31 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.04 Total: -27.38 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -64.02 5.03 -58.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.344 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds