Wall clock time and date at job start Mon Mar 30 2020 03:55:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47033 * 2 1
4 4 C 1.52993 * 109.47610 * 239.99490 * 2 1 3
5 5 N 1.46502 * 109.46703 * 119.99370 * 2 1 3
6 6 C 1.46769 * 124.34688 * 179.97438 * 5 2 1
7 7 C 1.54485 * 105.47030 * 197.03928 * 6 5 2
8 8 C 1.54627 * 101.76594 * 334.58477 * 7 6 5
9 9 H 1.09005 * 110.48027 * 143.47533 * 8 7 6
10 10 C 1.52999 * 110.48386 * 266.11821 * 8 7 6
11 11 C 1.50703 * 109.46623 * 185.00238 * 10 8 7
12 12 H 1.07997 * 120.00681 * 359.97438 * 11 10 8
13 13 C 1.37880 * 119.99552 * 180.02562 * 11 10 8
14 14 N 1.31512 * 120.00465 * 0.02562 * 13 11 10
15 15 Si 1.86799 * 119.99704 * 179.97438 * 13 11 10
16 16 H 1.48493 * 109.47260 * 359.97438 * 15 13 11
17 17 H 1.48498 * 109.47256 * 120.00145 * 15 13 11
18 18 H 1.48506 * 109.47157 * 239.99757 * 15 13 11
19 19 C 1.34417 * 124.35146 * 359.97438 * 5 2 1
20 20 O 1.21279 * 124.94464 * 359.59579 * 19 5 2
21 21 H 1.09002 * 109.47427 * 300.00489 * 1 2 3
22 22 H 1.09000 * 109.46831 * 60.00216 * 1 2 3
23 23 H 1.08997 * 109.47400 * 180.02562 * 1 2 3
24 24 H 1.09006 * 109.47230 * 179.97438 * 3 2 1
25 25 H 1.09000 * 109.47135 * 299.99598 * 3 2 1
26 26 H 1.08996 * 109.47671 * 59.99811 * 3 2 1
27 27 H 1.09004 * 109.47287 * 300.00814 * 4 2 1
28 28 H 1.09004 * 109.47128 * 59.99892 * 4 2 1
29 29 H 1.08994 * 109.47550 * 180.02562 * 4 2 1
30 30 H 1.08998 * 110.24703 * 78.04283 * 6 5 2
31 31 H 1.08997 * 110.24528 * 316.03524 * 6 5 2
32 32 H 1.09000 * 110.96819 * 216.46072 * 7 6 5
33 33 H 1.08997 * 110.96657 * 92.70464 * 7 6 5
34 34 H 1.08997 * 109.47192 * 304.99773 * 10 8 7
35 35 H 1.08994 * 109.46894 * 65.00430 * 10 8 7
36 36 H 0.96996 * 120.00479 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2491
5 7 2.0182 -0.6905 1.1963
6 6 3.4367 -0.8794 1.5224
7 6 3.4692 -1.9977 2.5877
8 6 2.0641 -1.8713 3.2206
9 1 1.6715 -2.8552 3.4774
10 6 2.1132 -0.9731 4.4582
11 6 0.7623 -0.9641 5.1261
12 1 -0.0501 -1.5408 4.7094
13 6 0.5632 -0.2185 6.2687
14 7 1.5520 0.4851 6.7755
15 14 -1.1114 -0.2067 7.0962
16 1 -2.0465 -1.0721 6.3336
17 1 -0.9816 -0.7196 8.4838
18 1 -1.6377 1.1816 7.1290
19 6 1.2247 -1.2324 2.1362
20 8 0.0122 -1.2128 2.1173
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9564 0.8899
27 1 1.6767 -1.7490 -1.2491
28 1 1.6768 -0.2076 -2.1392
29 1 3.1300 -0.7217 -1.2488
30 1 3.8561 0.0409 1.9289
31 1 3.9899 -1.1874 0.6352
32 1 4.2483 -1.8101 3.3266
33 1 3.6014 -2.9750 2.1233
34 1 2.8602 -1.3543 5.1544
35 1 2.3781 0.0414 4.1605
36 1 1.4119 1.0099 7.5791
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260206200.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:14
Heat of formation + Delta-G solvation = -47.555775 kcal
Electronic energy + Delta-G solvation = -16489.054097 eV
Core-core repulsion = 13972.734195 eV
Total energy + Delta-G solvation = -2516.319901 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.19129 -36.21026 -35.54950 -32.92745 -30.58522 -28.26248 -27.22163 -27.07606
-25.53456 -22.45570 -21.74182 -19.78654 -17.97278 -16.40021 -15.97768 -15.38375
-14.65250 -14.32102 -13.91254 -13.77535 -13.57712 -12.83301 -12.59784 -12.40719
-12.11155 -11.94210 -11.74082 -11.51088 -11.45226 -11.20902 -11.15050 -10.91864
-10.78620 -10.67389 -10.37525 -10.12019 -9.41422 -9.04857 -8.49874 -8.23025
-8.12470 -5.94103 -3.93796 3.38243 3.45350 3.45884 3.51133 3.54697
4.55026 4.84388 5.06282 5.08482 5.21809 5.33129 5.36603 5.44117
5.61658 5.65024 5.72124 5.82781 5.84618 5.98987 6.01797 6.11883
6.16626 6.18866 6.35273 6.50332 6.56869 6.70258 6.83291 7.22431
7.57832 7.67523 7.81354 8.06932 8.45182 9.04060 9.15112 9.70287
11.17443
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.033489 B = 0.008408 C = 0.007667
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.898162 B = 3329.333850 C = 3651.268728
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.174 3.826
3 C -0.156 4.156
4 C -0.154 4.154
5 N -0.622 5.622
6 C 0.110 3.890
7 C -0.133 4.133
8 C -0.115 4.115
9 H 0.091 0.909
10 C 0.042 3.958
11 C -0.511 4.511
12 H 0.065 0.935
13 C 0.055 3.945
14 N -0.901 5.901
15 Si 0.891 3.109
16 H -0.271 1.271
17 H -0.285 1.285
18 H -0.286 1.286
19 C 0.536 3.464
20 O -0.522 6.522
21 H 0.073 0.927
22 H 0.049 0.951
23 H 0.066 0.934
24 H 0.055 0.945
25 H 0.062 0.938
26 H 0.062 0.938
27 H 0.057 0.943
28 H 0.063 0.937
29 H 0.056 0.944
30 H 0.065 0.935
31 H 0.065 0.935
32 H 0.086 0.914
33 H 0.068 0.932
34 H 0.028 0.972
35 H 0.018 0.982
36 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.030 -1.506 -14.001 14.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.090 3.910
3 C -0.215 4.215
4 C -0.212 4.212
5 N -0.358 5.358
6 C -0.013 4.013
7 C -0.171 4.171
8 C -0.137 4.137
9 H 0.109 0.891
10 C 0.005 3.995
11 C -0.549 4.549
12 H 0.083 0.917
13 C -0.145 4.145
14 N -0.541 5.541
15 Si 0.719 3.281
16 H -0.195 1.195
17 H -0.211 1.211
18 H -0.212 1.212
19 C 0.325 3.675
20 O -0.397 6.397
21 H 0.092 0.908
22 H 0.068 0.932
23 H 0.085 0.915
24 H 0.075 0.925
25 H 0.081 0.919
26 H 0.081 0.919
27 H 0.076 0.924
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.083 0.917
31 H 0.084 0.916
32 H 0.105 0.895
33 H 0.087 0.913
34 H 0.046 0.954
35 H 0.036 0.964
36 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 4.372 -1.346 -13.936 14.668
hybrid contribution -0.699 0.221 0.530 0.904
sum 3.673 -1.126 -13.406 13.946
Atomic orbital electron populations
1.22076 0.92445 1.03401 1.01740 1.20324 0.95228 0.91364 0.84110
1.22183 1.01150 0.95735 1.02391 1.22164 1.01143 1.00880 0.97022
1.48422 1.07203 1.57698 1.22495 1.21887 0.82347 0.99102 0.97990
1.22706 0.99006 0.97585 0.97809 1.22192 0.92741 1.02005 0.96713
0.89130 1.18994 0.98038 0.93484 0.88993 1.21351 0.96652 1.27903
1.08990 0.91725 1.24977 0.96730 0.95495 0.97262 1.69967 1.31288
1.30650 1.22189 0.86530 0.84697 0.77792 0.79055 1.19537 1.21145
1.21180 1.20959 0.87456 0.77287 0.81831 1.90629 1.13116 1.59406
1.76577 0.90830 0.93220 0.91463 0.92546 0.91933 0.91868 0.92389
0.91821 0.92534 0.91681 0.91642 0.89508 0.91326 0.95365 0.96386
0.93215
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 7.00 37.16 0.26 -1.99 16
2 C 0.17 2.55 1.20 -131.82 -0.16 2.39 16
3 C -0.16 -2.05 8.54 37.16 0.32 -1.73 16
4 C -0.15 -1.78 8.49 37.15 0.32 -1.46 16
5 N -0.62 -10.69 2.76 -157.57 -0.43 -11.13 16
6 C 0.11 1.59 6.60 -3.12 -0.02 1.57 16
7 C -0.13 -2.05 6.71 -25.10 -0.17 -2.22 16
8 C -0.11 -2.39 2.88 -90.63 -0.26 -2.65 16
9 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16
10 C 0.04 1.08 4.38 -27.88 -0.12 0.96 16
11 C -0.51 -14.94 8.61 -34.44 -0.30 -15.24 16
12 H 0.06 1.95 7.36 -52.49 -0.39 1.56 16
13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
14 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16
15 Si 0.89 22.85 29.54 -169.99 -5.02 17.83 16
16 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16
17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
19 C 0.54 11.50 6.87 -10.86 -0.07 11.42 16
20 O -0.52 -12.90 13.41 5.56 0.07 -12.83 16
21 H 0.07 1.42 7.06 -51.93 -0.37 1.05 16
22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
23 H 0.07 1.18 7.08 -51.93 -0.37 0.82 16
24 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16
25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.06 0.58 7.21 -51.93 -0.37 0.21 16
30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16
32 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16
33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16
35 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16
36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 288.32 15.07 4.34 4.34
Total: -1.00 -32.70 288.32 -6.65 -39.35
By element:
Atomic # 1 Polarization: 2.53 SS G_CDS: -6.04 Total: -3.51 kcal
Atomic # 6 Polarization: -7.09 SS G_CDS: -0.31 Total: -7.39 kcal
Atomic # 7 Polarization: -38.09 SS G_CDS: 0.30 Total: -37.79 kcal
Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal
Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -32.70 -6.65 -39.35 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260206200.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.203 kcal
(2) G-P(sol) polarization free energy of solvation -32.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds