Wall clock time and date at job start Mon Mar 30 2020 03:55:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47033 * 2 1
4 4 C 1.52993 * 109.47610 * 239.99490 * 2 1 3
5 5 N 1.46502 * 109.46703 * 119.99370 * 2 1 3
6 6 C 1.46769 * 124.34688 * 179.97438 * 5 2 1
7 7 C 1.54485 * 105.47030 * 197.03928 * 6 5 2
8 8 C 1.54627 * 101.76594 * 334.58477 * 7 6 5
9 9 H 1.09005 * 110.48027 * 143.47533 * 8 7 6
10 10 C 1.52999 * 110.48386 * 266.11821 * 8 7 6
11 11 C 1.50703 * 109.46623 * 185.00238 * 10 8 7
12 12 H 1.07997 * 120.00681 * 359.97438 * 11 10 8
13 13 C 1.37880 * 119.99552 * 180.02562 * 11 10 8
14 14 N 1.31512 * 120.00465 * 0.02562 * 13 11 10
15 15 Si 1.86799 * 119.99704 * 179.97438 * 13 11 10
16 16 H 1.48493 * 109.47260 * 359.97438 * 15 13 11
17 17 H 1.48498 * 109.47256 * 120.00145 * 15 13 11
18 18 H 1.48506 * 109.47157 * 239.99757 * 15 13 11
19 19 C 1.34417 * 124.35146 * 359.97438 * 5 2 1
20 20 O 1.21279 * 124.94464 * 359.59579 * 19 5 2
21 21 H 1.09002 * 109.47427 * 300.00489 * 1 2 3
22 22 H 1.09000 * 109.46831 * 60.00216 * 1 2 3
23 23 H 1.08997 * 109.47400 * 180.02562 * 1 2 3
24 24 H 1.09006 * 109.47230 * 179.97438 * 3 2 1
25 25 H 1.09000 * 109.47135 * 299.99598 * 3 2 1
26 26 H 1.08996 * 109.47671 * 59.99811 * 3 2 1
27 27 H 1.09004 * 109.47287 * 300.00814 * 4 2 1
28 28 H 1.09004 * 109.47128 * 59.99892 * 4 2 1
29 29 H 1.08994 * 109.47550 * 180.02562 * 4 2 1
30 30 H 1.08998 * 110.24703 * 78.04283 * 6 5 2
31 31 H 1.08997 * 110.24528 * 316.03524 * 6 5 2
32 32 H 1.09000 * 110.96819 * 216.46072 * 7 6 5
33 33 H 1.08997 * 110.96657 * 92.70464 * 7 6 5
34 34 H 1.08997 * 109.47192 * 304.99773 * 10 8 7
35 35 H 1.08994 * 109.46894 * 65.00430 * 10 8 7
36 36 H 0.96996 * 120.00479 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2491
5 7 2.0182 -0.6905 1.1963
6 6 3.4367 -0.8794 1.5224
7 6 3.4692 -1.9977 2.5877
8 6 2.0641 -1.8713 3.2206
9 1 1.6715 -2.8552 3.4774
10 6 2.1132 -0.9731 4.4582
11 6 0.7623 -0.9641 5.1261
12 1 -0.0501 -1.5408 4.7094
13 6 0.5632 -0.2185 6.2687
14 7 1.5520 0.4851 6.7755
15 14 -1.1114 -0.2067 7.0962
16 1 -2.0465 -1.0721 6.3336
17 1 -0.9816 -0.7196 8.4838
18 1 -1.6377 1.1816 7.1290
19 6 1.2247 -1.2324 2.1362
20 8 0.0122 -1.2128 2.1173
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9564 0.8899
27 1 1.6767 -1.7490 -1.2491
28 1 1.6768 -0.2076 -2.1392
29 1 3.1300 -0.7217 -1.2488
30 1 3.8561 0.0409 1.9289
31 1 3.9899 -1.1874 0.6352
32 1 4.2483 -1.8101 3.3266
33 1 3.6014 -2.9750 2.1233
34 1 2.8602 -1.3543 5.1544
35 1 2.3781 0.0414 4.1605
36 1 1.4119 1.0099 7.5791
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260206200.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:13
Heat of formation + Delta-G solvation = -68.363430 kcal
Electronic energy + Delta-G solvation = -16489.956384 eV
Core-core repulsion = 13972.734195 eV
Total energy + Delta-G solvation = -2517.222189 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.65519 -37.62973 -37.10158 -35.02449 -32.31100 -29.78475 -28.40524 -28.18228
-27.28363 -24.45208 -23.01852 -21.30488 -19.43969 -18.51677 -17.37305 -17.01088
-16.34507 -16.07434 -15.26664 -15.10724 -14.74149 -14.44078 -14.36404 -13.85067
-13.55154 -13.33844 -13.28401 -12.91353 -12.86666 -12.67210 -12.62078 -12.53595
-12.29669 -12.10154 -12.00465 -11.78482 -11.39945 -11.06658 -10.62463 -10.06783
-9.48543 -8.22526 -6.29092 1.32580 1.34008 1.48600 1.84096 2.17155
2.39097 3.10784 3.58886 3.74789 3.97515 4.01366 4.12785 4.15067
4.34658 4.60711 4.69186 4.71874 4.76903 4.82064 4.87191 4.88339
4.96022 4.98324 5.10170 5.18897 5.26751 5.34909 5.43136 5.44026
5.57742 5.77444 5.93676 6.21443 6.36352 6.84005 7.38076 7.46999
8.88824
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.033489 B = 0.008408 C = 0.007667
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.898162 B = 3329.333850 C = 3651.268728
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.161 3.839
3 C -0.151 4.151
4 C -0.144 4.144
5 N -0.615 5.615
6 C 0.106 3.894
7 C -0.120 4.120
8 C -0.120 4.120
9 H 0.081 0.919
10 C 0.053 3.947
11 C -0.531 4.531
12 H 0.046 0.954
13 C 0.005 3.995
14 N -0.928 5.928
15 Si 0.952 3.048
16 H -0.276 1.276
17 H -0.268 1.268
18 H -0.279 1.279
19 C 0.521 3.479
20 O -0.570 6.570
21 H 0.029 0.971
22 H 0.082 0.918
23 H 0.045 0.955
24 H 0.075 0.925
25 H 0.090 0.910
26 H 0.029 0.971
27 H 0.049 0.951
28 H 0.087 0.913
29 H 0.077 0.923
30 H 0.064 0.936
31 H 0.112 0.888
32 H 0.094 0.906
33 H 0.101 0.899
34 H 0.017 0.983
35 H -0.007 1.007
36 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.371 -1.563 -15.905 17.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.078 3.922
3 C -0.209 4.209
4 C -0.202 4.202
5 N -0.349 5.349
6 C -0.016 4.016
7 C -0.157 4.157
8 C -0.142 4.142
9 H 0.099 0.901
10 C 0.016 3.984
11 C -0.569 4.569
12 H 0.065 0.935
13 C -0.193 4.193
14 N -0.569 5.569
15 Si 0.778 3.222
16 H -0.200 1.200
17 H -0.193 1.193
18 H -0.205 1.205
19 C 0.310 3.690
20 O -0.449 6.449
21 H 0.049 0.951
22 H 0.101 0.899
23 H 0.064 0.936
24 H 0.094 0.906
25 H 0.109 0.891
26 H 0.049 0.951
27 H 0.068 0.932
28 H 0.106 0.894
29 H 0.096 0.904
30 H 0.083 0.917
31 H 0.130 0.870
32 H 0.113 0.887
33 H 0.119 0.881
34 H 0.035 0.965
35 H 0.012 0.988
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 5.762 -1.395 -15.864 16.935
hybrid contribution -1.114 0.266 1.097 1.586
sum 4.648 -1.129 -14.766 15.522
Atomic orbital electron populations
1.21979 0.94181 1.01809 1.01140 1.20690 0.94134 0.92765 0.84580
1.22150 1.02274 0.94284 1.02182 1.22085 1.02394 1.00083 0.95598
1.48557 1.07957 1.56202 1.22204 1.22160 0.80940 0.98879 0.99610
1.22703 0.95171 0.99861 0.97994 1.22061 0.96722 1.00225 0.95200
0.90064 1.18754 0.95810 0.93090 0.90743 1.21638 0.97847 1.27855
1.09569 0.93548 1.25769 1.00382 0.95161 0.97939 1.70046 1.33005
1.31141 1.22714 0.85587 0.80208 0.77882 0.78555 1.20043 1.19326
1.20515 1.21122 0.87133 0.77835 0.82884 1.90596 1.15074 1.61391
1.77848 0.95146 0.89923 0.93592 0.90648 0.89107 0.95147 0.93194
0.89378 0.90384 0.91728 0.87013 0.88722 0.88070 0.96490 0.98843
0.92771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.33 7.00 71.98 0.50 -3.83 16
2 C 0.16 4.43 1.20 3.60 0.00 4.43 16
3 C -0.15 -3.60 8.54 71.98 0.61 -2.98 16
4 C -0.14 -2.72 8.49 71.98 0.61 -2.11 16
5 N -0.61 -20.46 2.76 -771.03 -2.13 -22.58 16
6 C 0.11 2.75 6.60 86.83 0.57 3.32 16
7 C -0.12 -3.42 6.71 31.65 0.21 -3.21 16
8 C -0.12 -5.08 2.88 -10.80 -0.03 -5.12 16
9 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16
10 C 0.05 2.84 4.38 29.85 0.13 2.97 16
11 C -0.53 -32.27 8.61 25.60 0.22 -32.05 16
12 H 0.05 2.93 7.36 -2.91 -0.02 2.91 16
13 C 0.01 0.31 5.46 84.66 0.46 0.77 16
14 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16
15 Si 0.95 47.85 29.54 68.60 2.03 49.87 16
16 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16
17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16
18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16
19 C 0.52 22.93 6.87 87.90 0.60 23.53 16
20 O -0.57 -29.69 13.41 -3.03 -0.04 -29.73 16
21 H 0.03 1.22 7.06 -2.39 -0.02 1.20 16
22 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
23 H 0.04 1.66 7.08 -2.39 -0.02 1.64 16
24 H 0.07 1.51 7.90 -2.38 -0.02 1.49 16
25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16
28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
29 H 0.08 1.17 7.21 -2.39 -0.02 1.16 16
30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
31 H 0.11 1.95 7.12 -2.39 -0.02 1.93 16
32 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16
33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16
34 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16
35 H -0.01 -0.39 8.12 -2.39 -0.02 -0.41 16
36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16
Total: -1.00 -74.96 288.32 5.08 -69.88
By element:
Atomic # 1 Polarization: 2.96 SS G_CDS: 1.03 Total: 3.99 kcal
Atomic # 6 Polarization: -18.17 SS G_CDS: 3.91 Total: -14.27 kcal
Atomic # 7 Polarization: -77.91 SS G_CDS: -1.84 Total: -79.75 kcal
Atomic # 8 Polarization: -29.69 SS G_CDS: -0.04 Total: -29.73 kcal
Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal
Total: -74.96 5.08 -69.88 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260206200.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.518 kcal
(2) G-P(sol) polarization free energy of solvation -74.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds