Wall clock time and date at job start Mon Mar 30 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.52993 * 109.47610 * 239.99490 * 2 1 3 5 5 N 1.46502 * 109.46703 * 119.99370 * 2 1 3 6 6 C 1.46769 * 124.34688 * 179.97438 * 5 2 1 7 7 C 1.54485 * 105.47030 * 197.03928 * 6 5 2 8 8 C 1.54627 * 101.76594 * 334.58477 * 7 6 5 9 9 H 1.09005 * 110.48027 * 143.47533 * 8 7 6 10 10 C 1.52999 * 110.48386 * 266.11821 * 8 7 6 11 11 C 1.50703 * 109.46623 * 185.00238 * 10 8 7 12 12 H 1.07997 * 120.00681 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99552 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00465 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99704 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47260 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47256 * 120.00145 * 15 13 11 18 18 H 1.48506 * 109.47157 * 239.99757 * 15 13 11 19 19 C 1.34417 * 124.35146 * 359.97438 * 5 2 1 20 20 O 1.21279 * 124.94464 * 359.59579 * 19 5 2 21 21 H 1.09002 * 109.47427 * 300.00489 * 1 2 3 22 22 H 1.09000 * 109.46831 * 60.00216 * 1 2 3 23 23 H 1.08997 * 109.47400 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47135 * 299.99598 * 3 2 1 26 26 H 1.08996 * 109.47671 * 59.99811 * 3 2 1 27 27 H 1.09004 * 109.47287 * 300.00814 * 4 2 1 28 28 H 1.09004 * 109.47128 * 59.99892 * 4 2 1 29 29 H 1.08994 * 109.47550 * 180.02562 * 4 2 1 30 30 H 1.08998 * 110.24703 * 78.04283 * 6 5 2 31 31 H 1.08997 * 110.24528 * 316.03524 * 6 5 2 32 32 H 1.09000 * 110.96819 * 216.46072 * 7 6 5 33 33 H 1.08997 * 110.96657 * 92.70464 * 7 6 5 34 34 H 1.08997 * 109.47192 * 304.99773 * 10 8 7 35 35 H 1.08994 * 109.46894 * 65.00430 * 10 8 7 36 36 H 0.96996 * 120.00479 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0182 -0.6905 1.1963 6 6 3.4367 -0.8794 1.5224 7 6 3.4692 -1.9977 2.5877 8 6 2.0641 -1.8713 3.2206 9 1 1.6715 -2.8552 3.4774 10 6 2.1132 -0.9731 4.4582 11 6 0.7623 -0.9641 5.1261 12 1 -0.0501 -1.5408 4.7094 13 6 0.5632 -0.2185 6.2687 14 7 1.5520 0.4851 6.7755 15 14 -1.1114 -0.2067 7.0962 16 1 -2.0465 -1.0721 6.3336 17 1 -0.9816 -0.7196 8.4838 18 1 -1.6377 1.1816 7.1290 19 6 1.2247 -1.2324 2.1362 20 8 0.0122 -1.2128 2.1173 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1300 -0.7217 -1.2488 30 1 3.8561 0.0409 1.9289 31 1 3.9899 -1.1874 0.6352 32 1 4.2483 -1.8101 3.3266 33 1 3.6014 -2.9750 2.1233 34 1 2.8602 -1.3543 5.1544 35 1 2.3781 0.0414 4.1605 36 1 1.4119 1.0099 7.5791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:13 Heat of formation + Delta-G solvation = -68.363430 kcal Electronic energy + Delta-G solvation = -16489.956384 eV Core-core repulsion = 13972.734195 eV Total energy + Delta-G solvation = -2517.222189 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65519 -37.62973 -37.10158 -35.02449 -32.31100 -29.78475 -28.40524 -28.18228 -27.28363 -24.45208 -23.01852 -21.30488 -19.43969 -18.51677 -17.37305 -17.01088 -16.34507 -16.07434 -15.26664 -15.10724 -14.74149 -14.44078 -14.36404 -13.85067 -13.55154 -13.33844 -13.28401 -12.91353 -12.86666 -12.67210 -12.62078 -12.53595 -12.29669 -12.10154 -12.00465 -11.78482 -11.39945 -11.06658 -10.62463 -10.06783 -9.48543 -8.22526 -6.29092 1.32580 1.34008 1.48600 1.84096 2.17155 2.39097 3.10784 3.58886 3.74789 3.97515 4.01366 4.12785 4.15067 4.34658 4.60711 4.69186 4.71874 4.76903 4.82064 4.87191 4.88339 4.96022 4.98324 5.10170 5.18897 5.26751 5.34909 5.43136 5.44026 5.57742 5.77444 5.93676 6.21443 6.36352 6.84005 7.38076 7.46999 8.88824 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033489 B = 0.008408 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.898162 B = 3329.333850 C = 3651.268728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 C -0.151 4.151 4 C -0.144 4.144 5 N -0.615 5.615 6 C 0.106 3.894 7 C -0.120 4.120 8 C -0.120 4.120 9 H 0.081 0.919 10 C 0.053 3.947 11 C -0.531 4.531 12 H 0.046 0.954 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.268 1.268 18 H -0.279 1.279 19 C 0.521 3.479 20 O -0.570 6.570 21 H 0.029 0.971 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.017 0.983 35 H -0.007 1.007 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -1.563 -15.905 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.078 3.922 3 C -0.209 4.209 4 C -0.202 4.202 5 N -0.349 5.349 6 C -0.016 4.016 7 C -0.157 4.157 8 C -0.142 4.142 9 H 0.099 0.901 10 C 0.016 3.984 11 C -0.569 4.569 12 H 0.065 0.935 13 C -0.193 4.193 14 N -0.569 5.569 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.193 1.193 18 H -0.205 1.205 19 C 0.310 3.690 20 O -0.449 6.449 21 H 0.049 0.951 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.035 0.965 35 H 0.012 0.988 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.762 -1.395 -15.864 16.935 hybrid contribution -1.114 0.266 1.097 1.586 sum 4.648 -1.129 -14.766 15.522 Atomic orbital electron populations 1.21979 0.94181 1.01809 1.01140 1.20690 0.94134 0.92765 0.84580 1.22150 1.02274 0.94284 1.02182 1.22085 1.02394 1.00083 0.95598 1.48557 1.07957 1.56202 1.22204 1.22160 0.80940 0.98879 0.99610 1.22703 0.95171 0.99861 0.97994 1.22061 0.96722 1.00225 0.95200 0.90064 1.18754 0.95810 0.93090 0.90743 1.21638 0.97847 1.27855 1.09569 0.93548 1.25769 1.00382 0.95161 0.97939 1.70046 1.33005 1.31141 1.22714 0.85587 0.80208 0.77882 0.78555 1.20043 1.19326 1.20515 1.21122 0.87133 0.77835 0.82884 1.90596 1.15074 1.61391 1.77848 0.95146 0.89923 0.93592 0.90648 0.89107 0.95147 0.93194 0.89378 0.90384 0.91728 0.87013 0.88722 0.88070 0.96490 0.98843 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.00 71.98 0.50 -3.83 16 2 C 0.16 4.43 1.20 3.60 0.00 4.43 16 3 C -0.15 -3.60 8.54 71.98 0.61 -2.98 16 4 C -0.14 -2.72 8.49 71.98 0.61 -2.11 16 5 N -0.61 -20.46 2.76 -771.03 -2.13 -22.58 16 6 C 0.11 2.75 6.60 86.83 0.57 3.32 16 7 C -0.12 -3.42 6.71 31.65 0.21 -3.21 16 8 C -0.12 -5.08 2.88 -10.80 -0.03 -5.12 16 9 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 10 C 0.05 2.84 4.38 29.85 0.13 2.97 16 11 C -0.53 -32.27 8.61 25.60 0.22 -32.05 16 12 H 0.05 2.93 7.36 -2.91 -0.02 2.91 16 13 C 0.01 0.31 5.46 84.66 0.46 0.77 16 14 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 15 Si 0.95 47.85 29.54 68.60 2.03 49.87 16 16 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 C 0.52 22.93 6.87 87.90 0.60 23.53 16 20 O -0.57 -29.69 13.41 -3.03 -0.04 -29.73 16 21 H 0.03 1.22 7.06 -2.39 -0.02 1.20 16 22 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 1.66 7.08 -2.39 -0.02 1.64 16 24 H 0.07 1.51 7.90 -2.38 -0.02 1.49 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.17 7.21 -2.39 -0.02 1.16 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 1.95 7.12 -2.39 -0.02 1.93 16 32 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 35 H -0.01 -0.39 8.12 -2.39 -0.02 -0.41 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.96 288.32 5.08 -69.88 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.03 Total: 3.99 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.91 Total: -14.27 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.84 Total: -79.75 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.04 Total: -29.73 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal Total: -74.96 5.08 -69.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.518 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds